RLG00000015437

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000833
Physical Location & Seq
Reverse (-)
65980221 .. 65981892
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015437

Sequence Viewer

Length: 1401 bp
ATGTCTTCTCTCCGACCAACAATCTCTTTCAAATCCAGTTCGAACTTCAATGAGCTTCAATGGGTGATTCAAATCCAAAAAATCCTAGATGAAGAGCTCGAGGATGATCGTGATAGTGAAATCCCTATCTCCATTTTCAACGTCCCCAAATCCCTCTTGACTAGTGACCCGGAATCGTACACCCCTCAACTGGTTGCGATTGGTCCTTACCATCACTGGCGTCCGGAACTGTATGACATGGAGAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCACTACTTGTTTTGAGAGAAGTGTTGGCATTTCAGTTACCAACGTTGGAATGCGCCGACGATATGCTCCTTTCCATGTTTATGGGACTATGCAAAGTGCTCTCCCCATTCAAGATGAATGATGACGACATGCCAAAGATCCACGTGTCGAGCTGTTGTCACTTGCTAGACTTTTTGTACCACATGATCACCCCCAAATTAGAAGCTAGACCGTCTGAAATTGCAGAAGCCCAGGATGGTTCAGCCACACCACACGAGGGAAAATCTTCAGATAACTCGAATTTCATCAAACAATTTCTGGAGGAGGTATGGAAGCTGCTATCGAATTGGAACAAAGGCCTGATACGTCTTCTGAAAAAAATTCTAATATCTCGACCAGTAAAAGTGATAGGCAAAGCTTGGACTATCCTCTCCAACCATCCTGGACTCGCAATTTTGAAACAACCTCTCAAGTTATTTTCCTCGCAAGACAAAGAAGTAGTCAAACCCGAAGATGATAATTCGAGCAATAGACCACCGTTGATAGAGGAGCTCACCATCCCATCTGTTTTCGATCTCTCAAAATCAGGTGTCAAGTTCTTGCCCGCAAGGAGTATTTCAACCATCTCTTTCGATGCTAAAACTTGCTCATTTTACCTCCCAAGTACAAGCTTAGATGGGAACACAGAGGTGATCCTGAGAAACTTGGTGGCCTATGAGGCATCAACTGCATCGGGGCCATTGGTTTTTACTCGCTACACCGAGTTGATGATTGGGATCATAGACACCAAGGAGGACGCCAAGTTGCTTAGAGAGAAAGGTATCATCTTGAACCTTTTGAAGAGTGACGAAGAAGTGGCAAAACTGTTCAATGGCATGAGCATGTCCATTAGATTGACCAAAGTGCCCTTCTTGGACAAGGCAATCAAAGATGTCAACAAGTATTACAATGGTAGATGGAAGGTGAAGATAAGGAAGTCTTTGAAAACTTATGTGTTCGGTTCTTGGCAATTTCTGGCTTCGCTCGCTACCATTTTGCTCCTGCTCTTGATGACATTGGAAGCATTTTGCTCAGTCTATAGCTGCAGTCGCATGTTTCATATCAACACCACTAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

467

Amino Acids

52.95

Weight (kDa)

7.13

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 45 - 82 6.8e-10 Plant protein of unknown function
DUF247 PF03140 87 - 443 1.9e-65 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 1 cut(s) 885
AclI AACGTT 1 cut(s) 344
AclWI GGATC 3 cut(s) 433, 967, 1064
AcsI RAATTY 2 cut(s) 580, 660
AcuI CTGAAG 1 cut(s) 552
AcvI CACGTG 1 cut(s) 445
AcyI GRCGYC 2 cut(s) 220, 1077
AfaI GTAC 3 cut(s) 179, 479, 946
AfiI CCNNNNNNNGG 2 cut(s) 190, 557
AflIII ACRYGT 1 cut(s) 444
AhlI ACTAGT 1 cut(s) 161
AjnI CCWGG 2 cut(s) 531, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 1172, 1204
AleI CACNNNNGTG 1 cut(s) 968
AluBI AGCT 9 cut(s) 55, 97, 453, 506, 616, 698, 832, 951, 1362
AluI AGCT 9 cut(s) 55, 97, 453, 506, 616, 698, 832, 951, 1362
Alw21I GWGCWC 3 cut(s) 99, 402, 834
AlwI GGATC 3 cut(s) 433, 967, 1064
Ama87I CYCGRG 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 637, 990, 1016
ApeKI GCWGC 2 cut(s) 616, 1362
ApoI RAATTY 2 cut(s) 580, 660
ArsI GACNNNNNNTTYG 2 cut(s) 765, 797
Asp700I GAANNNNTTC 1 cut(s) 565
AspLEI GCGC 2 cut(s) 256, 356
AspS9I GGNCC 2 cut(s) 203, 1016
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 6 cut(s) 76, 292, 481, 826, 982, 1255
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 1188
BanII GRGCYC 2 cut(s) 99, 834
BauI CACGAG 1 cut(s) 554
BbrPI CACGTG 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 641
Bbv12I GWGCWC 3 cut(s) 99, 402, 834
BbvI GCAGC 2 cut(s) 603, 1349
BccI CCATC 8 cut(s) 219, 530, 726, 845, 850, 911, 950, 1230
BciT130I CCWGG 2 cut(s) 533, 723
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 4 cut(s) 86, 162, 467, 507
BfmI CTRYAG 2 cut(s) 1357, 1363
BglI GCCNNNNNGGC 1 cut(s) 998
BisI GCNGC 2 cut(s) 617, 1363
BlsI GCNGC 2 cut(s) 618, 1364
Bme1390I CCNGG 3 cut(s) 170, 533, 723
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 203, 1016
BmiI GGNNCC 1 cut(s) 1017
BmrFI CCNGG 3 cut(s) 170, 533, 723
BmsI GCATC 5 cut(s) 265, 273, 904, 1010, 1019
BpiI GAAGAC 1 cut(s) 641
BpmI CTGGAG 1 cut(s) 620
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 308, 734
BpuMI CCSGG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 445
BsaBI GATNNNNATC 2 cut(s) 71, 1055
BsaHI GRCGYC 2 cut(s) 220, 1077
BsaJI CCNNGG 2 cut(s) 531, 1068
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 557
Bse1I ACTGG 4 cut(s) 36, 195, 221, 677
Bse21I CCTNAGG 1 cut(s) 269
Bse8I GATNNNNATC 2 cut(s) 71, 1055
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 2 cut(s) 533, 723
BseDI CCNNGG 2 cut(s) 531, 1068
BseGI GGATG 4 cut(s) 109, 541, 718, 837
BseJI GATNNNNATC 2 cut(s) 71, 1055
BseLI CCNNNNNNNGG 2 cut(s) 190, 557
BseMII CTCAG 2 cut(s) 968, 1365
BseNI ACTGG 4 cut(s) 36, 195, 221, 677
BseRI GAGGAG 2 cut(s) 617, 842
BseSI GKGCMC 1 cut(s) 1188
BseXI GCAGC 2 cut(s) 603, 1349
BshFI GGCC 3 cut(s) 639, 992, 1018
BsiHKAI GWGCWC 3 cut(s) 99, 402, 834
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 170, 224
BslFI GGGAC 3 cut(s) 128, 287, 399
BslI CCNNNNNNNGG 2 cut(s) 190, 557
BsmFI GGGAC 3 cut(s) 128, 287, 399
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 3 cut(s) 639, 992, 1018
BsoBI CYCGRG 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 4 cut(s) 99, 402, 834, 1188
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
BspACI CCGC 1 cut(s) 885
BspANI GGCC 3 cut(s) 639, 992, 1018
BspCNI CTCAG 2 cut(s) 969, 1364
BspEI TCCGGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 1017
BspMAI CTGCAG 1 cut(s) 1367
BspPI GGATC 3 cut(s) 433, 967, 1064
BspQI GCTCTTC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 41
BsrI ACTGG 4 cut(s) 36, 195, 221, 677
BssECI CCNNGG 2 cut(s) 531, 1068
BssMI GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
BssNI GRCGYC 2 cut(s) 220, 1077
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 1068
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 2 cut(s) 533, 723
Bst4CI ACNGT 4 cut(s) 231, 513, 819, 1146
Bst6I CTCTTC 2 cut(s) 87, 1115
BstACI GRCGYC 2 cut(s) 220, 1077
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstBAI YACGTR 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 885, 1305
BstDEI CTNAG 5 cut(s) 269, 952, 977, 1088, 1351
BstF5I GGATG 4 cut(s) 109, 541, 718, 837
BstHHI GCGC 2 cut(s) 256, 356
BstKTI GATC 6 cut(s) 109, 441, 489, 856, 975, 1059
BstMBI GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
BstMWI GCNNNNNNNGC 5 cut(s) 260, 998, 1007, 1304, 1368
BstNI CCWGG 2 cut(s) 533, 723
BstNSI RCATGY 3 cut(s) 433, 1165, 1375
BstSCI CCNGG 3 cut(s) 168, 531, 721
BstSFI CTRYAG 2 cut(s) 1357, 1363
BstSLI GKGCMC 1 cut(s) 1188
BstV1I GCAGC 2 cut(s) 603, 1349
BstV2I GAAGAC 1 cut(s) 641
BstX2I RGATCY 1 cut(s) 438
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 269
BsuRI GGCC 3 cut(s) 639, 992, 1018
BtsCI GGATG 4 cut(s) 109, 541, 718, 837
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 885, 1305
CfoI GCGC 2 cut(s) 256, 356
Cfr13I GGNCC 2 cut(s) 203, 1016
CseI GACGC 2 cut(s) 209, 1085
Csp6I GTAC 3 cut(s) 178, 478, 945
CviAII CATG 8 cut(s) 238, 260, 376, 430, 484, 1156, 1162, 1372
CviQI GTAC 3 cut(s) 178, 478, 945
DdeI CTNAG 5 cut(s) 269, 952, 977, 1088, 1351
DpnI GATC 6 cut(s) 108, 440, 488, 855, 974, 1058
DpnII GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
Eam1104I CTCTTC 2 cut(s) 87, 1115
EarI CTCTTC 2 cut(s) 87, 1115
Ecl136II GAGCTC 2 cut(s) 97, 832
Eco130I CCWWGG 1 cut(s) 1068
Eco147I AGGCCT 1 cut(s) 639
Eco24I GRGCYC 2 cut(s) 99, 834
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 2 cut(s) 97, 832
Eco57I CTGAAG 1 cut(s) 552
Eco72I CACGTG 1 cut(s) 445
Eco81I CCTNAGG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 2 cut(s) 97, 832
EcoRII CCWGG 2 cut(s) 531, 721
EcoT14I CCWWGG 1 cut(s) 1068
EcoT38I GRGCYC 2 cut(s) 99, 834
ErhI CCWWGG 1 cut(s) 1068
FaeI CATG 8 cut(s) 241, 263, 379, 433, 487, 1159, 1165, 1375
FalI AAGNNNNNCTT 2 cut(s) 1243, 1275
FaqI GGGAC 3 cut(s) 128, 287, 399
FatI CATG 8 cut(s) 237, 259, 375, 429, 483, 1155, 1161, 1371
FauI CCCGC 1 cut(s) 892
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 617, 1363
FokI GGATG 4 cut(s) 116, 548, 705, 824
FriOI GRGCYC 2 cut(s) 99, 834
Fsp4HI GCNGC 2 cut(s) 617, 1363
FspBI CTAG 4 cut(s) 86, 162, 467, 507
GlaI GCGC 2 cut(s) 255, 355
GluI GCNGC 2 cut(s) 617, 1363
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 3 cut(s) 639, 992, 1018
HapII CCGG 2 cut(s) 170, 224
HgaI GACGC 2 cut(s) 209, 1085
HhaI GCGC 2 cut(s) 256, 356
Hin1I GRCGYC 2 cut(s) 220, 1077
Hin1II CATG 8 cut(s) 241, 263, 379, 433, 487, 1159, 1165, 1375
Hin6I GCGC 2 cut(s) 254, 354
HinP1I GCGC 2 cut(s) 254, 354
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HindIII AAGCTT 2 cut(s) 696, 949
HinfI GANTC 3 cut(s) 67, 173, 726
HpaII CCGG 2 cut(s) 170, 224
HphI GGTGA 6 cut(s) 76, 292, 481, 826, 982, 1255
Hpy166II GTNNAC 2 cut(s) 180, 1216
Hpy188I TCNGA 4 cut(s) 14, 517, 571, 654
Hpy188III TCNNGA 9 cut(s) 110, 157, 224, 412, 599, 672, 976, 1108, 1327
Hpy8I GTNNAC 2 cut(s) 180, 1216
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 1198, 1234
HpyCH4III ACNGT 4 cut(s) 231, 513, 819, 1146
HpyCH4IV ACGT 4 cut(s) 141, 344, 444, 646
HpyCH4V TGCA 5 cut(s) 263, 393, 524, 1010, 1365
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 998, 1007, 1304, 1368
HpyF3I CTNAG 5 cut(s) 269, 952, 977, 1088, 1351
HpySE526I ACGT 4 cut(s) 141, 344, 444, 646
Hsp92I GRCGYC 2 cut(s) 220, 1077
Hsp92II CATG 8 cut(s) 241, 263, 379, 433, 487, 1159, 1165, 1375
HspAI GCGC 2 cut(s) 254, 354
Kpn2I TCCGGA 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 372, 829, 1323
Lsp1109I GCAGC 2 cut(s) 603, 1349
LweI GCATC 5 cut(s) 265, 273, 904, 1010, 1019
MaeI CTAG 4 cut(s) 86, 162, 467, 507
MaeII ACGT 4 cut(s) 141, 344, 444, 646
MaeIII GTNAC 4 cut(s) 164, 336, 458, 1124
MalI GATC 6 cut(s) 108, 440, 488, 855, 974, 1058
MboI GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
MboII GAAGA 7 cut(s) 104, 558, 641, 803, 1132, 1142, 1258
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 4 cut(s) 99, 402, 834, 1188
MluCI AATT 9 cut(s) 497, 519, 580, 593, 625, 660, 732, 799, 1289
MlyI GAGTC 1 cut(s) 720
MmeI TCCRAC 3 cut(s) 37, 327, 738
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 565
MslI CAYNNNNRTG 3 cut(s) 380, 968, 1160
MspI CCGG 2 cut(s) 170, 224
MspR9I CCNGG 3 cut(s) 170, 533, 723
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 2 cut(s) 533, 723
MwoI GCNNNNNNNGC 5 cut(s) 260, 998, 1007, 1304, 1368
NciI CCSGG 1 cut(s) 170
NdeII GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
NlaIII CATG 8 cut(s) 241, 263, 379, 433, 487, 1159, 1165, 1375
NlaIV GGNNCC 1 cut(s) 1017
NmuCI GTSAC 3 cut(s) 164, 458, 1124
NspI RCATGY 3 cut(s) 433, 1165, 1375
NspV TTCGAA 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 968
PaeR7I CTCGAG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 67, 173
PfoI TCCNGGA 1 cut(s) 721
PkrI GCNGC 2 cut(s) 618, 1364
PleI GAGTC 1 cut(s) 720
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 1 cut(s) 720
Ppu21I YACGTR 1 cut(s) 445
Psp124BI GAGCTC 2 cut(s) 99, 834
Psp1406I AACGTT 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 531, 721
PspCI CACGTG 1 cut(s) 445
PspGI CCWGG 2 cut(s) 531, 721
PspN4I GGNNCC 1 cut(s) 1017
PspPI GGNCC 2 cut(s) 203, 1016
PspXI VCTCGAGB 1 cut(s) 98
PstI CTGCAG 1 cut(s) 1367
PsuI RGATCY 1 cut(s) 438
RsaI GTAC 3 cut(s) 179, 479, 946
RsaNI GTAC 3 cut(s) 178, 478, 945
RseI CAYNNNNRTG 3 cut(s) 380, 968, 1160
SacI GAGCTC 2 cut(s) 99, 834
SapI GCTCTTC 1 cut(s) 87
SatI GCNGC 2 cut(s) 617, 1363
Sau3AI GATC 6 cut(s) 106, 438, 486, 853, 972, 1056
Sau96I GGNCC 2 cut(s) 203, 1016
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 3 cut(s) 170, 533, 723
SduI GDGCHC 4 cut(s) 99, 402, 834, 1188
SfaNI GCATC 5 cut(s) 265, 273, 904, 1010, 1019
SfcI CTRYAG 2 cut(s) 1357, 1363
Sfr274I CTCGAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 98
SmiMI CAYNNNNRTG 3 cut(s) 380, 968, 1160
SmlI CTYRAG 3 cut(s) 98, 287, 749
SmoI CTYRAG 3 cut(s) 98, 287, 749
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 9 cut(s) 497, 519, 580, 593, 625, 660, 732, 799, 1289
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 1 cut(s) 885
SspMI CTAG 4 cut(s) 86, 162, 467, 507
SstI GAGCTC 2 cut(s) 99, 834
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 3 cut(s) 168, 531, 721
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 4 cut(s) 231, 513, 819, 1146
TaiI ACGT 4 cut(s) 144, 347, 447, 649
TaqI TCGA 9 cut(s) 41, 99, 449, 578, 623, 673, 803, 852, 912
TasI AATT 9 cut(s) 497, 519, 580, 593, 625, 660, 732, 799, 1289
TatI WGTACW 1 cut(s) 944
TfiI GAWTC 2 cut(s) 67, 173
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 3 cut(s) 164, 458, 1124
TseI GCWGC 2 cut(s) 616, 1362
Tsp45I GTSAC 3 cut(s) 164, 458, 1124
TspDTI ATGAA 4 cut(s) 105, 431, 574, 1367
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 2 cut(s) 580, 660
XceI RCATGY 3 cut(s) 433, 1165, 1375
XhoI CTCGAG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 4 cut(s) 86, 162, 467, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.