RLG00000034373

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000833
Physical Location & Seq
Reverse (-)
41610361 .. 41611059
699 bp
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UTR
Exon/CDS
Intron
RLM00000034373

Sequence Viewer

Length: 699 bp
ATGTTTTTCAACCTTCTTTTGAAACAACCTCTTGAATCCTTATTTTCCACCCAAGACAAGGGAGCAGCCAAACCCGAAGATGAAAGTTCGAGCCATGGCATTAGTAAACCGCCGTCGATAGAGGAGATCACCATCCCATCTGTCTCCGATCTCTCAAAATCTGGTGTCAAGTTCTGTCTCACAAGTAGCATTTCGAGCATCTCTTTCGATGCTAAAACTCGCTCATTTTCCCTCCCGAGAACTTGCTTAGATTGGAACACAGGAGTGATCCTGAGAAACTTGGTGGCCTACGAAGCATCAACTGTATCAGGGCCATTGGTTTTTACTTGCTACACCGAGTTGATGAACGGGATCATAGACACCGAGGAGGATGCCAAGTTGCTTAGAGAGAATGGTATCATCACTAACCATTTGAAGAGTGATGAAGAAGTGGCAAATCTGTTCAATGGCATGGGCAAGTCCATTAGATTGACCAAAGTGCCCTTCTTGGATAAGGCAATCGAAGATGCCAACAACCATTACAATGGTACATGGAAAGTGAAGATGAGGAAGTTTTTGAAAACTTTTGTGTATGGTTCCTGGCCATTACTGGCTTTGCTGGCTGTCATTTTGCTCCTGCTATTGATGACAGTGCAAGCATTTTGCTCAGTCTATAGCTGCAGTCGCATATTTGATAGGCATTTCAACACCAGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

233

Amino Acids

25.93

Weight (kDa)

7.63

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 26 - 208 2.8e-47 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AclWI GGATC 2 cut(s) 262, 359
AcoI YGGCCR 1 cut(s) 581
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 7 cut(s) 10, 22, 35, 415, 445, 559, 685
AjnI CCWGG 1 cut(s) 578
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 1 cut(s) 657
AluI AGCT 1 cut(s) 657
Alw26I GTCTC 2 cut(s) 148, 182
AlwI GGATC 2 cut(s) 262, 359
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 3 cut(s) 285, 311, 581
ApeKI GCWGC 2 cut(s) 65, 657
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 483
BalI TGGCCA 1 cut(s) 583
BbvI GCAGC 2 cut(s) 77, 644
BccI CCATC 2 cut(s) 140, 145
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 353, 387
BciT130I CCWGG 1 cut(s) 580
BcoDI GTCTC 2 cut(s) 148, 182
BfmI CTRYAG 2 cut(s) 652, 658
BisI GCNGC 2 cut(s) 66, 658
BlsI GCNGC 2 cut(s) 67, 659
Bme1390I CCNGG 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 1 cut(s) 580
BmsI GCATC 5 cut(s) 199, 207, 305, 361, 496
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 94, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 594
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 2 cut(s) 94, 363
BseGI GGATG 2 cut(s) 132, 376
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 263, 660
BseNI ACTGG 1 cut(s) 594
BseRI GAGGAG 2 cut(s) 137, 380
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 2 cut(s) 77, 644
BshFI GGCC 3 cut(s) 287, 313, 583
BsiHKCI CYCGRG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 148, 182
BsnI GGCC 3 cut(s) 287, 313, 583
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 4 cut(s) 126, 148, 267, 351
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 1 cut(s) 110
BspANI GGCC 3 cut(s) 287, 313, 583
BspCNI CTCAG 2 cut(s) 264, 659
BspLI GGNNCC 1 cut(s) 577
BspMAI CTGCAG 1 cut(s) 662
BspPI GGATC 2 cut(s) 262, 359
BsrI ACTGG 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 94, 363
BssMI GATC 4 cut(s) 126, 148, 267, 351
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 2 cut(s) 304, 631
Bst6I CTCTTC 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 600, 636
BstDEI CTNAG 5 cut(s) 247, 272, 383, 646, 696
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 132, 376
BstKTI GATC 4 cut(s) 129, 151, 270, 354
BstMAI GTCTC 2 cut(s) 148, 182
BstMBI GATC 4 cut(s) 126, 148, 267, 351
BstMWI GCNNNNNNNGC 4 cut(s) 195, 293, 599, 663
BstNI CCWGG 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 578
BstSFI CTRYAG 2 cut(s) 652, 658
BstSLI GKGCMC 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 77, 644
BstXI CCANNNNNNTGG 1 cut(s) 524
BsuRI GGCC 3 cut(s) 287, 313, 583
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 132, 376
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 2 cut(s) 600, 636
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 528
CviAII CATG 3 cut(s) 95, 451, 531
CviJI RGCY 8 cut(s) 68, 93, 287, 313, 583, 593, 602, 657
CviKI_1 RGCY 8 cut(s) 68, 93, 287, 313, 583, 593, 602, 657
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 5 cut(s) 247, 272, 383, 646, 696
DpnI GATC 4 cut(s) 128, 150, 269, 353
DpnII GATC 4 cut(s) 126, 148, 267, 351
EaeI YGGCCR 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 3 cut(s) 98, 454, 534
FaiI YATR 7 cut(s) 96, 356, 452, 532, 573, 654, 668
FatI CATG 3 cut(s) 94, 450, 530
Fnu4HI GCNGC 2 cut(s) 66, 658
FokI GGATG 2 cut(s) 119, 383
Fsp4HI GCNGC 2 cut(s) 66, 658
GluI GCNGC 2 cut(s) 66, 658
HaeIII GGCC 3 cut(s) 287, 313, 583
Hin1II CATG 3 cut(s) 98, 454, 534
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 32, 235, 271
Hpy8I GTNNAC 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 23, 493
HpyCH4III ACNGT 2 cut(s) 304, 631
HpyCH4V TGCA 2 cut(s) 634, 660
HpyF10VI GCNNNNNNNGC 4 cut(s) 195, 293, 599, 663
HpyF3I CTNAG 5 cut(s) 247, 272, 383, 646, 696
Hsp92II CATG 3 cut(s) 98, 454, 534
Kzo9I GATC 4 cut(s) 126, 148, 267, 351
LmnI GCTCC 2 cut(s) 62, 618
LpnPI CCDG 9 cut(s) 147, 246, 284, 294, 565, 575, 584, 592, 629
Lsp1109I GCAGC 2 cut(s) 77, 644
LweI GCATC 5 cut(s) 199, 207, 305, 361, 496
MalI GATC 4 cut(s) 128, 150, 269, 353
MboI GATC 4 cut(s) 126, 148, 267, 351
MboII GAAGA 5 cut(s) 89, 427, 437, 515, 553
MhlI GDGCHC 1 cut(s) 483
MlsI TGGCCA 1 cut(s) 583
MluNI TGGCCA 1 cut(s) 583
MnlI CCTC 6 cut(s) 39, 115, 242, 358, 361, 540
Mox20I TGGCCA 1 cut(s) 583
MscI TGGCCA 1 cut(s) 583
MslI CAYNNNNRTG 2 cut(s) 263, 522
Msp20I TGGCCA 1 cut(s) 583
MspR9I CCNGG 1 cut(s) 580
MvaI CCWGG 1 cut(s) 580
MwoI GCNNNNNNNGC 4 cut(s) 195, 293, 599, 663
NcoI CCATGG 1 cut(s) 94
NdeII GATC 4 cut(s) 126, 148, 267, 351
NlaIII CATG 3 cut(s) 98, 454, 534
NlaIV GGNNCC 1 cut(s) 577
OliI CACNNNNGTG 1 cut(s) 263
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 67, 659
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 662
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 2 cut(s) 263, 522
SatI GCNGC 2 cut(s) 66, 658
Sau3AI GATC 4 cut(s) 126, 148, 267, 351
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 1 cut(s) 483
SetI ASST 3 cut(s) 15, 31, 659
SfaNI GCATC 5 cut(s) 199, 207, 305, 361, 496
SfcI CTRYAG 2 cut(s) 652, 658
SmiMI CAYNNNNRTG 2 cut(s) 263, 522
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 304, 631
TaqI TCGA 5 cut(s) 89, 116, 194, 207, 501
TfiI GAWTC 1 cut(s) 35
TscAI CASTG 1 cut(s) 636
TseI GCWGC 2 cut(s) 65, 657
TspDTI ATGAA 3 cut(s) 96, 359, 438
TspRI CASTG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.