Rroxscaffold_1G00035530

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000833
Physical Location & Seq
Forward (+)
51622652 .. 51624258
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035530.1

Sequence Viewer

Length: 1524 bp
ATGGGTGATTCAAATCCGAAAACCGTAGAGGAAGAGCTCGACGATGATAGTGAAATCCCTATCTCCATTTTCAACGTCCCCAAATCCCTCTTGAGGTACAAAGTGGCTGCGGCTAAAAGAACCCAAAAGCAGCTCCAGCTCAAAACCCTCAAATTCCAGCACCTTGTTGACCAATTGACGAGGTCAGAGCTGAGGATTCGTGCTTGTTACCACAAGTACTTGGAGGTTAATGGTGACACTTTGGGGTGGATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGACTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACTATGCAGGAAAGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCACTAATTGTTTTAATAAAAGTATTGGAATTTCAATTCCCAGCGTTGGAATGCGAGGATATGCTTCTTTCCATGTTTATTGGATTGTACAAAGAGCTCTCACCATTCAAGATGAATGATGAAGACTTGCCAAAGATCCAAGTCTCGAGTTGTTTTCACTTGCTGGACTTCTTGTACCACATGATCACCGCCAAGTTAGAAGCCGAGCCATCGGAAATCACAGATGCCGTGGAATATGAGGCCACACCACACAAGGAAAAATCATCAGTTAACTCGAATTTCGTCAAACAATTACTGGAGGAGGTATGGAAGCTGCTATCGAAGTTGTATAAAGGCCCAATATCTCTTCTGAAAAAAATTCAAATATCTAAACCTGTAAAAGTGATATCCCAACTGCCTTGGACTACGCTTTTCAACCTTCTTTTGAAACAACCTCTTGAATCCTTATTTTCCACCCAAGACAAAGGAGCAGCCAAACCCGAAGATGAAAGTTCGAGCCATGGCATTAGTAAACCGCCGTCGATAGAGGAGATCACCATCCCATCTGTCTCCGATCTCTCAAAATCTGGTGTCAAGTTCTGTCTCGCAAGTAGTATTTCGAGCATCTCTTTCGATGCTAAAACTTGCTCATTTTCCCTCCCGAGAACTTGCTTAGATTGGAACACAGGGGTGATCCTGAGAAACTTGGTGGCCTACGAAGCATCAACTGTATCAGGGCCATTGGTTTTTACTCGCTACACCGAGTTGATGAACGGGATCATAGACACCGAGGAGGATGCCAAGTTGCTTAGAGAAAATGGTATCATCACTAACCATTTGAAGAGTGATGAAGAAGTGGCATATCTGTTCAATGGCATGAGCAGGTCCATTAGATTGACCAAAGTGCCCTTCTTGGATAAGGCAATCGAAGATGCCAACAACCATTACAATGGTACATGGAAAGTGAAGATGAGGAAGTTTTTGAAAACTTTTGTGTATGGTTCCTGGCCATTACTGGCTTTGCTGGCTGTCATTTTGCTCCTGCTCTTGACGACACTGCAAGCAATTTGCTCAGTCTATAGCTGCAGTCGCATAATAGATAGGCATTTCAATACCAGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

507

Amino Acids

57.56

Weight (kDa)

6.34

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 32 - 483 2e-80 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 1272
AciI CCGC 3 cut(s) 110, 609, 935
AclWI GGATC 3 cut(s) 550, 1087, 1184
AcoI YGGCCR 2 cut(s) 255, 1406
AcsI RAATTY 4 cut(s) 152, 449, 697, 777
AfaI GTAC 5 cut(s) 98, 218, 509, 596, 1354
AfiI CCNNNNNNNGG 2 cut(s) 93, 466
AjnI CCWGG 1 cut(s) 1403
AjuI GAANNNNNNNTTGG 4 cut(s) 313, 345, 1292, 1324
AleI CACNNNNGTG 1 cut(s) 1088
AluBI AGCT 7 cut(s) 37, 133, 139, 190, 517, 733, 1482
AluI AGCT 7 cut(s) 37, 133, 139, 190, 517, 733, 1482
Alw21I GWGCWC 2 cut(s) 39, 519
Alw26I GTCTC 3 cut(s) 568, 973, 1007
AlwI GGATC 3 cut(s) 550, 1087, 1184
Ama87I CYCGRG 2 cut(s) 565, 1060
AoxI GGCC 7 cut(s) 255, 316, 660, 754, 1110, 1136, 1406
ApeKI GCWGC 5 cut(s) 107, 130, 733, 890, 1482
ApoI RAATTY 4 cut(s) 152, 449, 697, 777
AspLEI GCGC 2 cut(s) 343, 376
AspS9I GGNCC 5 cut(s) 307, 317, 755, 1136, 1284
AsuHPI GGTGA 7 cut(s) 17, 245, 412, 513, 598, 946, 1102
AvaI CYCGRG 2 cut(s) 565, 1060
AvaII GGWCC 2 cut(s) 307, 1284
AxyI CCTNAGG 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 1308
BalI TGGCCA 2 cut(s) 257, 1408
BanII GRGCYC 2 cut(s) 39, 519
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 2 cut(s) 39, 519
BbvCI CCTCAGC 1 cut(s) 191
BbvI GCAGC 5 cut(s) 94, 142, 720, 902, 1469
BccI CCATC 5 cut(s) 247, 331, 637, 965, 970
BceAI ACGGC 2 cut(s) 632, 922
BcgI CGANNNNNNTGC 4 cut(s) 1012, 1046, 1178, 1212
BciT130I CCWGG 1 cut(s) 1405
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 3 cut(s) 568, 973, 1007
BfmI CTRYAG 2 cut(s) 1477, 1483
BfuAI ACCTGC 1 cut(s) 1272
BisI GCNGC 6 cut(s) 108, 111, 131, 734, 891, 1483
BlsI GCNGC 6 cut(s) 109, 112, 132, 735, 892, 1484
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 1405
Bme18I GGWCC 2 cut(s) 307, 1284
BmeT110I CYCGRG 2 cut(s) 565, 1060
BmgT120I GGNCC 5 cut(s) 307, 317, 755, 1136, 1284
BmiI GGNNCC 1 cut(s) 1402
BmrFI CCNGG 1 cut(s) 1405
BmsI GCATC 9 cut(s) 253, 385, 393, 634, 1024, 1032, 1130, 1186, 1321
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 2 cut(s) 119, 737
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 112, 428
BsaBI GATNNNNATC 2 cut(s) 12, 956
BsaJI CCNNGG 4 cut(s) 648, 818, 919, 1188
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 466
Bse1I ACTGG 2 cut(s) 720, 1419
Bse21I CCTNAGG 1 cut(s) 389
Bse8I GATNNNNATC 2 cut(s) 12, 956
BseBI CCWGG 1 cut(s) 1405
BseDI CCNNGG 4 cut(s) 648, 818, 919, 1188
BseGI GGATG 4 cut(s) 255, 342, 957, 1201
BseJI GATNNNNATC 2 cut(s) 12, 956
BseLI CCNNNNNNNGG 2 cut(s) 93, 466
BseMII CTCAG 3 cut(s) 182, 1088, 1485
BseNI ACTGG 2 cut(s) 720, 1419
BseRI GAGGAG 3 cut(s) 734, 962, 1205
BseSI GKGCMC 1 cut(s) 1308
BseXI GCAGC 5 cut(s) 94, 142, 720, 902, 1469
BseYI CCCAGC 1 cut(s) 460
BshFI GGCC 7 cut(s) 257, 318, 662, 756, 1112, 1138, 1408
BsiHKAI GWGCWC 2 cut(s) 39, 519
BsiHKCI CYCGRG 2 cut(s) 565, 1060
BslFI GGGAC 2 cut(s) 62, 407
BslI CCNNNNNNNGG 2 cut(s) 93, 466
BsmAI GTCTC 3 cut(s) 568, 973, 1007
BsmFI GGGAC 2 cut(s) 62, 407
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 7 cut(s) 257, 318, 662, 756, 1112, 1138, 1408
BsoBI CYCGRG 2 cut(s) 565, 1060
Bsp1286I GDGCHC 3 cut(s) 39, 519, 1308
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
Bsp19I CCATGG 1 cut(s) 919
BspACI CCGC 3 cut(s) 110, 609, 935
BspANI GGCC 7 cut(s) 257, 318, 662, 756, 1112, 1138, 1408
BspCNI CTCAG 3 cut(s) 183, 1089, 1484
BspLI GGNNCC 1 cut(s) 1402
BspMAI CTGCAG 1 cut(s) 1487
BspMI ACCTGC 1 cut(s) 1272
BspPI GGATC 3 cut(s) 550, 1087, 1184
BspQI GCTCTTC 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 2 cut(s) 720, 1419
BssECI CCNNGG 4 cut(s) 648, 818, 919, 1188
BssMI GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
BssT1I CCWWGG 2 cut(s) 818, 919
Bst2UI CCWGG 1 cut(s) 1405
Bst4CI ACNGT 2 cut(s) 25, 1129
Bst6I CTCTTC 3 cut(s) 27, 771, 1235
BstAUI TGTACA 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 1425, 1461
BstDEI CTNAG 7 cut(s) 191, 389, 1072, 1097, 1208, 1471, 1521
BstDSI CCRYGG 2 cut(s) 648, 919
BstF5I GGATG 4 cut(s) 255, 342, 957, 1201
BstHHI GCGC 2 cut(s) 343, 376
BstKTI GATC 6 cut(s) 558, 606, 954, 976, 1095, 1179
BstMAI GTCTC 3 cut(s) 568, 973, 1007
BstMBI GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
BstMWI GCNNNNNNNGC 6 cut(s) 136, 263, 380, 1118, 1424, 1488
BstNI CCWGG 1 cut(s) 1405
BstSCI CCNGG 1 cut(s) 1403
BstSFI CTRYAG 2 cut(s) 1477, 1483
BstSLI GKGCMC 1 cut(s) 1308
BstV1I GCAGC 5 cut(s) 94, 142, 720, 902, 1469
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 1349
BstYI RGATCY 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 389
BsuRI GGCC 7 cut(s) 257, 318, 662, 756, 1112, 1138, 1408
BtgI CCRYGG 2 cut(s) 648, 919
BtsCI GGATG 4 cut(s) 255, 342, 957, 1201
BtsI GCAGTG 1 cut(s) 1454
BtsIMutI CAGTG 1 cut(s) 1454
BveI ACCTGC 1 cut(s) 1272
Cac8I GCNNGC 2 cut(s) 1425, 1461
CfoI GCGC 2 cut(s) 343, 376
Cfr13I GGNCC 5 cut(s) 307, 317, 755, 1136, 1284
Csp6I GTAC 5 cut(s) 97, 217, 508, 595, 1353
CviAII CATG 6 cut(s) 380, 493, 601, 920, 1276, 1356
CviQI GTAC 5 cut(s) 97, 217, 508, 595, 1353
DdeI CTNAG 7 cut(s) 191, 389, 1072, 1097, 1208, 1471, 1521
DpnI GATC 6 cut(s) 557, 605, 953, 975, 1094, 1178
DpnII GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 2 cut(s) 255, 1406
Eam1104I CTCTTC 3 cut(s) 27, 771, 1235
EarI CTCTTC 3 cut(s) 27, 771, 1235
Ecl136II GAGCTC 2 cut(s) 37, 517
Eco130I CCWWGG 2 cut(s) 818, 919
Eco24I GRGCYC 2 cut(s) 39, 519
Eco32I GATATC 1 cut(s) 807
Eco47I GGWCC 2 cut(s) 307, 1284
Eco53kI GAGCTC 2 cut(s) 37, 517
Eco81I CCTNAGG 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 565, 1060
EcoICRI GAGCTC 2 cut(s) 37, 517
EcoRII CCWGG 1 cut(s) 1403
EcoRV GATATC 1 cut(s) 807
EcoT14I CCWWGG 2 cut(s) 818, 919
EcoT38I GRGCYC 2 cut(s) 39, 519
ErhI CCWWGG 2 cut(s) 818, 919
FaeI CATG 6 cut(s) 383, 496, 604, 923, 1279, 1359
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 2 cut(s) 62, 407
FatI CATG 6 cut(s) 379, 492, 600, 919, 1275, 1355
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 6 cut(s) 108, 111, 131, 734, 891, 1483
FokI GGATG 4 cut(s) 262, 349, 944, 1208
FriOI GRGCYC 2 cut(s) 39, 519
Fsp4HI GCNGC 6 cut(s) 108, 111, 131, 734, 891, 1483
GlaI GCGC 2 cut(s) 342, 375
GluI GCNGC 6 cut(s) 108, 111, 131, 734, 891, 1483
GsaI CCCAGC 1 cut(s) 464
GsuI CTGGAG 2 cut(s) 119, 737
HaeIII GGCC 7 cut(s) 257, 318, 662, 756, 1112, 1138, 1408
HhaI GCGC 2 cut(s) 343, 376
Hin1II CATG 6 cut(s) 383, 496, 604, 923, 1279, 1359
Hin6I GCGC 2 cut(s) 341, 374
HinP1I GCGC 2 cut(s) 341, 374
HincII GTYRAC 3 cut(s) 169, 352, 691
HindII GTYRAC 3 cut(s) 169, 352, 691
HinfI GANTC 3 cut(s) 8, 196, 860
HpaI GTTAAC 1 cut(s) 691
HphI GGTGA 7 cut(s) 17, 245, 412, 513, 598, 946, 1102
Hpy166II GTNNAC 4 cut(s) 169, 352, 691, 932
Hpy188I TCNGA 5 cut(s) 18, 187, 634, 771, 973
Hpy188III TCNNGA 7 cut(s) 91, 529, 565, 857, 1060, 1096, 1447
Hpy8I GTNNAC 4 cut(s) 169, 352, 691, 932
Hpy99I CGWCG 2 cut(s) 44, 943
HpyAV CCTTC 3 cut(s) 308, 848, 1318
HpyCH4III ACNGT 2 cut(s) 25, 1129
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 4 cut(s) 359, 383, 1459, 1485
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 263, 380, 1118, 1424, 1488
HpyF3I CTNAG 7 cut(s) 191, 389, 1072, 1097, 1208, 1471, 1521
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 6 cut(s) 383, 496, 604, 923, 1279, 1359
HspAI GCGC 2 cut(s) 341, 374
Ksp22I TGATCA 1 cut(s) 603
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 138, 887, 1443
Lsp1109I GCAGC 5 cut(s) 94, 142, 720, 902, 1469
LweI GCATC 9 cut(s) 253, 385, 393, 634, 1024, 1032, 1130, 1186, 1321
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 206, 233
MalI GATC 6 cut(s) 557, 605, 953, 975, 1094, 1178
MboI GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
MboII GAAGA 9 cut(s) 44, 321, 554, 758, 914, 1252, 1262, 1340, 1378
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 3 cut(s) 39, 519, 1308
MlsI TGGCCA 2 cut(s) 257, 1408
MluCI AATT 9 cut(s) 152, 173, 426, 449, 455, 697, 710, 777, 1464
MluNI TGGCCA 2 cut(s) 257, 1408
MmeI TCCRAC 1 cut(s) 447
Mox20I TGGCCA 2 cut(s) 257, 1408
MscI TGGCCA 2 cut(s) 257, 1408
MseI TTAA 3 cut(s) 228, 434, 690
MslI CAYNNNNRTG 2 cut(s) 1088, 1347
Msp20I TGGCCA 2 cut(s) 257, 1408
MspR9I CCNGG 1 cut(s) 1405
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 1 cut(s) 1405
MwoI GCNNNNNNNGC 6 cut(s) 136, 263, 380, 1118, 1424, 1488
NcoI CCATGG 1 cut(s) 919
NdeII GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
NlaIII CATG 6 cut(s) 383, 496, 604, 923, 1279, 1359
NlaIV GGNNCC 1 cut(s) 1402
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 1088
PaeR7I CTCGAG 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 3 cut(s) 8, 196, 860
PflFI GACNNNGTC 1 cut(s) 181
PkrI GCNGC 6 cut(s) 109, 112, 132, 735, 892, 1484
Psp124BI GAGCTC 2 cut(s) 39, 519
Psp6I CCWGG 1 cut(s) 1403
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 1 cut(s) 1403
PspN4I GGNNCC 1 cut(s) 1402
PspPI GGNCC 5 cut(s) 307, 317, 755, 1136, 1284
PstI CTGCAG 1 cut(s) 1487
PsuI RGATCY 1 cut(s) 555
PsyI GACNNNGTC 1 cut(s) 181
RsaI GTAC 5 cut(s) 98, 218, 509, 596, 1354
RsaNI GTAC 5 cut(s) 97, 217, 508, 595, 1353
RseI CAYNNNNRTG 2 cut(s) 1088, 1347
SacI GAGCTC 2 cut(s) 39, 519
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 228, 434, 690
SatI GCNGC 6 cut(s) 108, 111, 131, 734, 891, 1483
Sau3AI GATC 6 cut(s) 555, 603, 951, 973, 1092, 1176
Sau96I GGNCC 5 cut(s) 307, 317, 755, 1136, 1284
ScaI AGTACT 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 1405
SduI GDGCHC 3 cut(s) 39, 519, 1308
SfaNI GCATC 9 cut(s) 253, 385, 393, 634, 1024, 1032, 1130, 1186, 1321
SfcI CTRYAG 2 cut(s) 1477, 1483
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 2 cut(s) 307, 1284
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 2 cut(s) 1088, 1347
SmlI CTYRAG 3 cut(s) 91, 407, 565
SmoI CTYRAG 3 cut(s) 91, 407, 565
Sse9I AATT 9 cut(s) 152, 173, 426, 449, 455, 697, 710, 777, 1464
SsiI CCGC 3 cut(s) 110, 609, 935
SstI GAGCTC 2 cut(s) 39, 519
StyD4I CCNGG 1 cut(s) 1403
StyI CCWWGG 2 cut(s) 818, 919
TaaI ACNGT 2 cut(s) 25, 1129
TaiI ACGT 1 cut(s) 78
TasI AATT 9 cut(s) 152, 173, 426, 449, 455, 697, 710, 777, 1464
TatI WGTACW 2 cut(s) 216, 507
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 8, 196, 860
Tru1I TTAA 3 cut(s) 228, 434, 690
Tru9I TTAA 3 cut(s) 228, 434, 690
TscAI CASTG 1 cut(s) 1461
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 5 cut(s) 107, 130, 733, 890, 1482
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 548, 555, 921, 1184, 1263
TspRI CASTG 1 cut(s) 1461
Tth111I GACNNNGTC 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 307, 1284
XapI RAATTY 4 cut(s) 152, 449, 697, 777
XhoI CTCGAG 1 cut(s) 565
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.