Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Reverse (-)

41714789 .. 41715911

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACCATGCAGGAAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCTCGATTTGTTTTGAAAAAAGTGTTGAAGTTTAAGCTCCCAGCATTGGAATGTGCCAAAGATAAGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCCCCATTCAAGATGAATGACGAAGACATGCCAAATATGGGAGTGAATATCCAATTCTCGACAGTCAAACCCGAAGATGACAGTTCGAGCAATGGCATTAGCAAACCGCCGAAGATAGAGGAGATCACCATCCCATCAGTCTCCGATCTCTCAAAATCTTGTGTCAAGTTCTTGGCCGGCGGAATTAGAATTTCAGACATCTCTTTCAATACTGAAACTGGCTCATTTACCCTCCCGATTACTAGCTTAGATGGGAACACAGGGGTGATCCTGAGAAACTTGGTGGCCTATGAAGCATCAAGTGTATCGGGGCCATTGGTTTTCACTCGCTACACCGAGTTAATGAACAGGATCATAGACACCGAGGAGGATGTCAAGTTGCTTAGAGAGAAGCGTATCATCGTGAACCATTTGAAGAGTGATGAAGAAGTGGCAAATCTGTTCAATGGCATGAGCAAGTCCATTAGATTAACCAAAGTGCCCTCCTTGGATAAGGTAATCGCAGATGCCAACGGGTATTACAATGGTAGATGGAAAGTGAAGATGAGGAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

274

Amino Acids

30.76

Weight (kDa)

8.63

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	1 - 273	2e-59	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	374, 447
AclWI	GGATC	2 cut(s)	529, 626
AcoI	YGGCCR	2 cut(s)	6, 441
AcsI	RAATTY	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	211, 305
AgsI	TTSAA	7 cut(s)	78, 181, 193, 277, 475, 682, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	202, 232, 265, 513
AluI	AGCT	4 cut(s)	202, 232, 265, 513
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	529, 626
AoxI	GGCC	5 cut(s)	6, 61, 441, 552, 578
ApoI	RAATTY	1 cut(s)	456
AspLEI	GCGC	2 cut(s)	88, 121
AspS9I	GGNCC	3 cut(s)	52, 62, 578
AsuHPI	GGTGA	3 cut(s)	157, 385, 544
AvaII	GGWCC	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	750
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	5 cut(s)	76, 404, 409, 512, 792
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	52, 62, 578
BmiI	GGNNCC	1 cut(s)	579
BmsI	GCATC	5 cut(s)	4, 130, 138, 572, 763
BpiI	GAAGAC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	630, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 305
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	490
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	630, 753
BseGI	GGATG	3 cut(s)	87, 396, 643
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	211, 305
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	401, 647
BseSI	GKGCMC	1 cut(s)	750
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	5 cut(s)	8, 63, 443, 554, 580
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	211, 305
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	5 cut(s)	8, 63, 443, 554, 580
Bsp1286I	GDGCHC	2 cut(s)	267, 750
Bsp143I	GATC	4 cut(s)	390, 412, 534, 618
BspACI	CCGC	2 cut(s)	374, 447
BspANI	GGCC	5 cut(s)	8, 63, 443, 554, 580
BspCNI	CTCAG	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	529, 626
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	630, 753
BssMI	GATC	4 cut(s)	390, 412, 534, 618
BssT1I	CCWWGG	1 cut(s)	753
Bst4CI	ACNGT	2 cut(s)	331, 350
Bst6I	CTCTTC	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	4 cut(s)	134, 514, 539, 650
BstF5I	GGATG	3 cut(s)	87, 396, 643
BstHHI	GCGC	2 cut(s)	88, 121
BstKTI	GATC	4 cut(s)	393, 415, 537, 621
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	4 cut(s)	390, 412, 534, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 125, 560
BstNSI	RCATGY	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	750
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	5 cut(s)	8, 63, 443, 554, 580
BtsCI	GGATG	3 cut(s)	87, 396, 643
Cac8I	GCNNGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	88, 121
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	3 cut(s)	52, 62, 578
CviAII	CATG	5 cut(s)	101, 125, 241, 295, 718
DdeI	CTNAG	4 cut(s)	134, 514, 539, 650
DpnI	GATC	4 cut(s)	392, 414, 536, 620
DpnII	GATC	4 cut(s)	390, 412, 534, 618
EaeI	YGGCCR	2 cut(s)	6, 441
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	5 cut(s)	104, 128, 244, 298, 721
FalI	AAGNNNNNCTT	4 cut(s)	58, 90, 216, 248
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	100, 124, 240, 294, 717
FokI	GGATG	3 cut(s)	94, 383, 650
FriOI	GRGCYC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	87, 120
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	5 cut(s)	8, 63, 443, 554, 580
HapII	CCGG	1 cut(s)	444
HhaI	GCGC	2 cut(s)	88, 121
Hin1II	CATG	5 cut(s)	104, 128, 244, 298, 721
Hin6I	GCGC	2 cut(s)	86, 119
HinP1I	GCGC	2 cut(s)	86, 119
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	3 cut(s)	157, 385, 544
Hpy166II	GTNNAC	2 cut(s)	97, 673
Hpy188I	TCNGA	2 cut(s)	412, 463
Hpy188III	TCNNGA	5 cut(s)	277, 325, 502, 538, 670
Hpy8I	GTNNAC	2 cut(s)	97, 673
HpyAV	CCTTC	2 cut(s)	53, 102
HpyCH4III	ACNGT	2 cut(s)	331, 350
HpyCH4V	TGCA	3 cut(s)	104, 128, 258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 125, 560
HpyF3I	CTNAG	4 cut(s)	134, 514, 539, 650
Hsp92II	CATG	5 cut(s)	104, 128, 244, 298, 721
HspAI	GCGC	2 cut(s)	86, 119
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	390, 412, 534, 618
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	90, 219, 457, 471, 513, 551, 601
LweI	GCATC	5 cut(s)	4, 130, 138, 572, 763
MaeI	CTAG	1 cut(s)	510
MalI	GATC	4 cut(s)	392, 414, 536, 620
MboI	GATC	4 cut(s)	390, 412, 534, 618
MboII	GAAGA	7 cut(s)	66, 302, 353, 391, 694, 704, 820
MhlI	GDGCHC	2 cut(s)	267, 750
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	3 cut(s)	320, 450, 456
MluNI	TGGCCA	1 cut(s)	8
Mox20I	TGGCCA	1 cut(s)	8
MroNI	GCCGGC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	3 cut(s)	198, 608, 737
MslI	CAYNNNNRTG	3 cut(s)	214, 245, 530
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	3 cut(s)	14, 125, 560
NaeI	GCCGGC	1 cut(s)	445
NdeII	GATC	4 cut(s)	390, 412, 534, 618
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	5 cut(s)	104, 128, 244, 298, 721
NlaIV	GGNNCC	1 cut(s)	579
NspI	RCATGY	1 cut(s)	298
OliI	CACNNNNGTG	1 cut(s)	530
PdiI	GCCGGC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	3 cut(s)	52, 62, 578
RseI	CAYNNNNRTG	3 cut(s)	214, 245, 530
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	198, 608, 737
Sau3AI	GATC	4 cut(s)	390, 412, 534, 618
Sau96I	GGNCC	3 cut(s)	52, 62, 578
SduI	GDGCHC	2 cut(s)	267, 750
SetI	ASST	6 cut(s)	54, 204, 234, 267, 515, 765
SfaNI	GCATC	5 cut(s)	4, 130, 138, 572, 763
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	3 cut(s)	214, 245, 530
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	320, 450, 456
SsiI	CCGC	2 cut(s)	374, 447
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	2 cut(s)	331, 350
TaqI	TCGA	4 cut(s)	30, 169, 326, 353
TasI	AATT	3 cut(s)	320, 450, 456
Tru1I	TTAA	3 cut(s)	198, 608, 737
Tru9I	TTAA	3 cut(s)	198, 608, 737
TspDTI	ATGAA	4 cut(s)	296, 573, 626, 705
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.