RLG00000015433

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000833
Physical Location & Seq
Reverse (-)
65949692 .. 65950514
823 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015433

Sequence Viewer

Length: 672 bp
ATGCCAAAGATCCAAGTGTCGAGTTGTTGTCACTTGCTAGACTTTTTGTACTGCATGATCACCCCCAAATTAGAAACTAGACCGTCCGAAATTGCAGAAGCCGAGAATGGTCCGGCCACACCACACGAGGGAAAGTCTTCAGATAATTCGAATTTCGTCAAACAATTTCTAGAGAAGTTAATTTCCTCCCAAGACAAAGAAGGAGTCAAACCCGAAGATGATAATTCGAGCAACAGACCGCCATTGATAAAGGATATCACCATCCCATCTGTCTCCGAACTCTCAAAATCAGGTGTCAAGTTCTTGCTCGCAAGTAGTATTTCAACCATCTCTTTCGATGCTAAAACTTGCTCATTTTACCTCCCGAGTACAAGCTTAGATGGGAACACAGAGGTGATCCTGAGAAACTTGGTGGCCTACGAGGCATCAACTGCATCAGGGCCATTGGTTTTTACCCGCTACACCGAGTTGATGAACGGAATCATAGACACCGAGGATGACGCCAAGTTGCTTAGAGAGAAGGGTATCATCTTGAACCGTTTGAAGAGTGACGAAGAAGTGGCAAAGCTGTTCAATGGCATGAGCAGGTCCATTAGATTGACCAAAGTGCCCTTCTTGGATAAGGCAATCAAAGATGCAAACAAGTATCACCGTATGGTAGATGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

224

Amino Acids

24.74

Weight (kDa)

5.99

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 5 - 218 9e-45 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 576
AciI CCGC 2 cut(s) 239, 457
AclWI GGATC 2 cut(s) 4, 391
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 50, 370
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 4 cut(s) 324, 535, 544, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AleI CACNNNNGTG 1 cut(s) 392
AluBI AGCT 2 cut(s) 375, 568
AluI AGCT 2 cut(s) 375, 568
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 2 cut(s) 4, 391
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 3 cut(s) 114, 414, 440
ApoI RAATTY 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 110, 440, 588
AsuHPI GGTGA 4 cut(s) 52, 250, 406, 641
AsuII TTCGAA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 2 cut(s) 110, 588
BaeGI GKGCMC 1 cut(s) 612
BauI CACGAG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 5 cut(s) 269, 274, 335, 374, 656
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 3 cut(s) 38, 78, 170
BfuAI ACCTGC 1 cut(s) 576
BglI GCCNNNNNGGC 1 cut(s) 422
Bme18I GGWCC 2 cut(s) 110, 588
BmeT110I CYCGRG 1 cut(s) 364
BmgT120I GGNCC 3 cut(s) 110, 440, 588
BmsI GCATC 4 cut(s) 328, 434, 443, 625
BpiI GAAGAC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 261, 502
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 612
BshFI GGCC 3 cut(s) 116, 416, 442
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 3 cut(s) 116, 416, 442
BsoBI CYCGRG 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 612
Bsp143I GATC 3 cut(s) 9, 57, 396
BspACI CCGC 2 cut(s) 239, 457
BspANI GGCC 3 cut(s) 116, 416, 442
BspCNI CTCAG 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 2 cut(s) 4, 391
BspT104I TTCGAA 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 3 cut(s) 9, 57, 396
BssNI GRCGYC 1 cut(s) 501
BssSI CACGAG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 125
Bst4CI ACNGT 3 cut(s) 84, 539, 653
Bst6I CTCTTC 1 cut(s) 539
BstACI GRCGYC 1 cut(s) 501
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 376, 401, 512
BstF5I GGATG 2 cut(s) 261, 502
BstKTI GATC 3 cut(s) 12, 60, 399
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 3 cut(s) 9, 57, 396
BstMWI GCNNNNNNNGC 2 cut(s) 422, 431
BstSLI GKGCMC 1 cut(s) 612
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 3 cut(s) 116, 416, 442
BtsCI GGATG 2 cut(s) 261, 502
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 110, 440, 588
CseI GACGC 1 cut(s) 509
Csp6I GTAC 2 cut(s) 49, 369
CviAII CATG 2 cut(s) 55, 580
CviJI RGCY 6 cut(s) 101, 116, 375, 416, 442, 568
CviKI_1 RGCY 6 cut(s) 101, 116, 375, 416, 442, 568
CviQI GTAC 2 cut(s) 49, 369
DdeI CTNAG 3 cut(s) 376, 401, 512
DpnI GATC 3 cut(s) 11, 59, 398
DpnII GATC 3 cut(s) 9, 57, 396
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 110, 588
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 256
FaeI CATG 2 cut(s) 58, 583
FaiI YATR 4 cut(s) 56, 485, 581, 656
FatI CATG 2 cut(s) 54, 579
FauI CCCGC 1 cut(s) 464
FbaI TGATCA 1 cut(s) 57
FokI GGATG 2 cut(s) 248, 509
FspBI CTAG 3 cut(s) 38, 78, 170
HaeIII GGCC 3 cut(s) 116, 416, 442
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 2 cut(s) 58, 583
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 2 cut(s) 204, 480
HpaII CCGG 1 cut(s) 113
HphI GGTGA 4 cut(s) 52, 250, 406, 641
Hpy188I TCNGA 3 cut(s) 88, 142, 277
Hpy188III TCNNGA 4 cut(s) 170, 364, 400, 532
HpyAV CCTTC 4 cut(s) 194, 514, 622, 660
HpyCH4III ACNGT 3 cut(s) 84, 539, 653
HpyCH4V TGCA 4 cut(s) 54, 95, 434, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 431
HpyF3I CTNAG 3 cut(s) 376, 401, 512
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 2 cut(s) 58, 583
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 9, 57, 396
LpnPI CCDG 5 cut(s) 126, 276, 413, 423, 571
LweI GCATC 4 cut(s) 328, 434, 443, 625
MaeI CTAG 3 cut(s) 38, 78, 170
MaeIII GTNAC 2 cut(s) 29, 548
MalI GATC 3 cut(s) 11, 59, 398
MboI GATC 3 cut(s) 9, 57, 396
MboII GAAGA 4 cut(s) 129, 227, 556, 566
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 7 cut(s) 68, 90, 145, 151, 164, 180, 223
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 6 cut(s) 121, 196, 371, 385, 415, 487
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 422, 431
NdeII GATC 3 cut(s) 9, 57, 396
NlaIII CATG 2 cut(s) 58, 583
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 29, 548
NspV TTCGAA 1 cut(s) 149
OliI CACNNNNGTG 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 480
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 110, 440, 588
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 2 cut(s) 50, 370
RsaNI GTAC 2 cut(s) 49, 369
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 3 cut(s) 9, 57, 396
Sau96I GGNCC 3 cut(s) 110, 440, 588
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 612
SetI ASST 7 cut(s) 295, 363, 377, 396, 570, 590, 671
SfaNI GCATC 4 cut(s) 328, 434, 443, 625
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 2 cut(s) 110, 588
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 7 cut(s) 68, 90, 145, 151, 164, 180, 223
SsiI CCGC 2 cut(s) 239, 457
SspMI CTAG 3 cut(s) 38, 78, 170
TaaI ACNGT 3 cut(s) 84, 539, 653
TaqI TCGA 4 cut(s) 20, 149, 227, 336
TasI AATT 7 cut(s) 68, 90, 145, 151, 164, 180, 223
TatI WGTACW 2 cut(s) 48, 368
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseFI GTSAC 2 cut(s) 29, 548
Tsp45I GTSAC 2 cut(s) 29, 548
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 110, 588
XapI RAATTY 1 cut(s) 151
XbaI TCTAGA 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 3 cut(s) 38, 78, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.