Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Reverse (-)

68643532 .. 68644783

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0503700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGAAGCTTGTTCCAAACTGGTACAGTGCTGCTCAACCCTTGCCTGAGACATACATATTCCCACCTGATGCAAGACCAGGGAAGTTTAGCGTTGCTCCTTCAATATCCAACGACATTCCAGTGATTGATCTAGGATCACAGAGTCATGATCGAGCTCTTGTGATCCAGCAAATACTTGAGGCTAGCCAAGAATTCGGTTTCTTTCAGGTAATCAACCATGGCATACCAGAAGCTTTAATGAATGACACAATGGATGTGTTCAAGGAGTTCTTTGAGTTGCCTCTAGAGGAAAAGAGGGCAAGCATCTACTCTGATGACCCCAACAAAGTCTGCAAGCTCGTACATAGCAGTGTTAATTATGATTGGGAGGAAGTTCATCTTTGGCGCGATTTCCTCCGACACCCTTGTGAACCTTTAGAAAAATTCATGCCAATTTGGCCTCGGAAACCGATTAAATATCGAGAGCATGTTAGCAAATGTTTCACCCAAGTGAAGAAAGTGGCTTTGGACATTTTGGAGTTGATCGGTGAAGGACTTGGGATAGGATCAGAGTATTTCAATGATGAACTTAGCAAAGAGACTGACATCTTTGTTAATCACTATCCACCTTGTCCTGACCCAAGTTTGACACTAGGAATAACTAAACACTCTGACCCACAGCTCATCACAATTTTACTTCAAGGGGATGTAAGTGGCCTTCAAGTTCTCAAGGATGGGGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGCTGAACATCGAGTGGTGACGAATTCAAGTACTGTTCGGACGACGATTGGATTTTTCATTACACCCTCCCCTGACTGCTATATAGAACCTGCAGCAGCTCTTATTAATGCAAGCAATCCCCGACTCTATAAAGGCTTCCGATATGAAGAGTTTCGTGCCAACTACTTTAGGAAACAGGGGAAAACCGAAGTTGTGCTTGAACCCTTTAAAATTGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

343

Amino Acids

39.01

Weight (kDa)

5.37

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 148	2.5e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 292	7.6e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	907
AccII	CGCG	1 cut(s)	390
AclWI	GGATC	4 cut(s)	145, 160, 556, 791
AcsI	RAATTY	3 cut(s)	194, 425, 832
AfaI	GTAC	3 cut(s)	26, 345, 841
AgsI	TTSAA	9 cut(s)	105, 265, 562, 683, 704, 747, 837, 1010, 1025
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AleI	CACNNNNGTG	2 cut(s)	408, 491
AluBI	AGCT	7 cut(s)	10, 158, 236, 340, 664, 802, 908
AluI	AGCT	7 cut(s)	10, 158, 236, 340, 664, 802, 908
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	44, 575
AlwI	GGATC	4 cut(s)	145, 160, 556, 791
AoxI	GGCC	2 cut(s)	440, 697
ApeKI	GCWGC	3 cut(s)	32, 902, 905
ApoI	RAATTY	3 cut(s)	194, 425, 832
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	1 cut(s)	960
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	478, 542, 838
AsuNHI	GCTAGC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	684, 716
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	19, 914, 917
BccI	CCATC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	44, 575
BfaI	CTAG	4 cut(s)	134, 186, 287, 635
BfmI	CTRYAG	1 cut(s)	900
BfuAI	ACCTGC	1 cut(s)	907
BglI	GCCNNNNNGGC	1 cut(s)	439
BisI	GCNGC	3 cut(s)	33, 903, 906
BlsI	GCNGC	3 cut(s)	34, 904, 907
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	61, 315
BmtI	GCTAGC	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	200, 695, 788
BsaJI	CCNNGG	3 cut(s)	80, 220, 443
Bse1I	ACTGG	3 cut(s)	26, 122, 759
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	80, 220, 443
BseGI	GGATG	3 cut(s)	262, 694, 721
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	26, 122, 759
BseXI	GCAGC	3 cut(s)	19, 914, 917
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	442, 699
BsiHKAI	GWGCWC	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	44, 575
BsnI	GGCC	2 cut(s)	442, 699
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
Bsp19I	CCATGG	1 cut(s)	220
BspANI	GGCC	2 cut(s)	442, 699
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	738
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	907
BspOI	GCTAGC	1 cut(s)	189
BspPI	GGATC	4 cut(s)	145, 160, 556, 791
BsrI	ACTGG	3 cut(s)	26, 122, 759
BssECI	CCNNGG	3 cut(s)	80, 220, 443
BssMI	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	29, 844
Bst6I	CTCTTC	1 cut(s)	951
BstC8I	GCNNGC	4 cut(s)	187, 304, 338, 922
BstDEI	CTNAG	3 cut(s)	48, 572, 1029
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	262, 694, 721
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	7 cut(s)	133, 140, 154, 168, 528, 551, 786
BstMAI	GTCTC	2 cut(s)	44, 575
BstMBI	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	900
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	19, 914, 917
BsuRI	GGCC	2 cut(s)	442, 699
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	262, 694, 721
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	3 cut(s)	34, 129, 358
BveI	ACCTGC	1 cut(s)	907
Cac8I	GCNNGC	4 cut(s)	187, 304, 338, 922
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	390
Csp6I	GTAC	3 cut(s)	25, 344, 840
CviAII	CATG	4 cut(s)	149, 221, 430, 470
CviQI	GTAC	3 cut(s)	25, 344, 840
DdeI	CTNAG	3 cut(s)	48, 572, 1029
DpnI	GATC	7 cut(s)	132, 139, 153, 167, 527, 550, 785
DpnII	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
DraI	TTTAAA	1 cut(s)	1018
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
Ecl136II	GAGCTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	158
EcoRI	GAATTC	2 cut(s)	194, 832
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	4 cut(s)	152, 224, 433, 473
FalI	AAGNNNNNCTT	6 cut(s)	257, 289, 366, 398, 990, 1022
FatI	CATG	4 cut(s)	148, 220, 429, 469
Fnu4HI	GCNGC	3 cut(s)	33, 903, 906
FokI	GGATG	3 cut(s)	269, 701, 728
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	33, 903, 906
FspBI	CTAG	4 cut(s)	134, 186, 287, 635
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	3 cut(s)	33, 903, 906
HaeIII	GGCC	2 cut(s)	442, 699
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	152, 224, 433, 473
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	2 cut(s)	8, 234
HinfI	GANTC	3 cut(s)	145, 933, 1025
HpaI	GTTAAC	1 cut(s)	763
HphI	GGTGA	3 cut(s)	478, 542, 838
Hpy166II	GTNNAC	2 cut(s)	413, 763
Hpy188I	TCNGA	7 cut(s)	316, 401, 447, 553, 655, 849, 950
Hpy188III	TCNNGA	4 cut(s)	149, 287, 464, 617
Hpy8I	GTNNAC	2 cut(s)	413, 763
Hpy99I	CGWCG	1 cut(s)	856
HpyAV	CCTTC	3 cut(s)	111, 527, 710
HpyCH4III	ACNGT	2 cut(s)	29, 844
HpyCH4V	TGCA	4 cut(s)	74, 336, 902, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	3 cut(s)	48, 572, 1029
Hsp92II	CATG	4 cut(s)	152, 224, 433, 473
HspAI	GCGC	1 cut(s)	388
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	3 cut(s)	19, 914, 917
LweI	GCATC	2 cut(s)	61, 315
MaeI	CTAG	4 cut(s)	134, 186, 287, 635
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	7 cut(s)	132, 139, 153, 167, 527, 550, 785
MboI	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
MboII	GAAGA	2 cut(s)	508, 968
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	8 cut(s)	194, 358, 425, 435, 672, 776, 832, 1020
MlyI	GAGTC	2 cut(s)	154, 927
MmeI	TCCRAC	2 cut(s)	135, 424
MnlI	CCTC	8 cut(s)	175, 283, 291, 294, 364, 407, 453, 886
MroXI	GAANNNNTTC	1 cut(s)	960
MseI	TTAA	7 cut(s)	239, 357, 456, 597, 762, 915, 1017
MslI	CAYNNNNRTG	4 cut(s)	122, 351, 408, 491
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	4 cut(s)	152, 224, 433, 473
NlaIV	GGNNCC	1 cut(s)	738
NmuCI	GTSAC	1 cut(s)	826
NspI	RCATGY	1 cut(s)	473
OliI	CACNNNNGTG	2 cut(s)	408, 491
PagI	TCATGA	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	960
PfeI	GAWTC	1 cut(s)	1025
PkrI	GCNGC	3 cut(s)	34, 904, 907
PleI	GAGTC	2 cut(s)	153, 927
PpsI	GAGTC	2 cut(s)	153, 927
PshBI	ATTAAT	1 cut(s)	915
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	738
PstI	CTGCAG	1 cut(s)	904
RsaI	GTAC	3 cut(s)	26, 345, 841
RsaNI	GTAC	3 cut(s)	25, 344, 840
RseI	CAYNNNNRTG	4 cut(s)	122, 351, 408, 491
SacI	GAGCTC	1 cut(s)	160
SaqAI	TTAA	7 cut(s)	239, 357, 456, 597, 762, 915, 1017
SatI	GCNGC	3 cut(s)	33, 903, 906
Sau3AI	GATC	7 cut(s)	130, 137, 151, 165, 525, 548, 783
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	2 cut(s)	154, 927
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	2 cut(s)	61, 315
SfcI	CTRYAG	1 cut(s)	900
SmiMI	CAYNNNNRTG	4 cut(s)	122, 351, 408, 491
SmlI	CTYRAG	3 cut(s)	179, 710, 803
SmoI	CTYRAG	3 cut(s)	179, 710, 803
Sse9I	AATT	8 cut(s)	194, 358, 425, 435, 672, 776, 832, 1020
SspMI	CTAG	4 cut(s)	134, 186, 287, 635
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	29, 844
TaqI	TCGA	3 cut(s)	154, 463, 820
TasI	AATT	8 cut(s)	194, 358, 425, 435, 672, 776, 832, 1020
TatI	WGTACW	1 cut(s)	839
TfiI	GAWTC	1 cut(s)	1025
Tru1I	TTAA	7 cut(s)	239, 357, 456, 597, 762, 915, 1017
Tru9I	TTAA	7 cut(s)	239, 357, 456, 597, 762, 915, 1017
TscAI	CASTG	3 cut(s)	34, 129, 358
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	32, 902, 905
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	6 cut(s)	257, 368, 418, 582, 856, 969
TspGWI	ACGGA	1 cut(s)	796
TspRI	CASTG	3 cut(s)	34, 129, 358
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	3 cut(s)	194, 425, 832
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	960
XspI	CTAG	4 cut(s)	134, 186, 287, 635
ZrmI	AGTACT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.