RchiOBHm_Chr5g0046291

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000833
Physical Location & Seq
Forward (+)
42341782 .. 42342063
282 bp
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UTR
Exon/CDS
Intron
PRQ32430

Sequence Viewer

Length: 282 bp
ATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACCATGCAGGAAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCTCGATTTGTTTTGAAAAAAGTGTTGAAGTTTAAGCTCCCAGCATTGGAATGTGCCAAAGATAAGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCCCATTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

93

Amino Acids

10.66

Weight (kDa)

9.34

Isoelectric Point (pI)

25.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 90 3.4e-14 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 4 cut(s) 78, 181, 193, 276
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 3 cut(s) 202, 232, 265
AluI AGCT 3 cut(s) 202, 232, 265
Alw21I GWGCWC 1 cut(s) 267
AoxI GGCC 2 cut(s) 6, 61
AspLEI GCGC 2 cut(s) 88, 121
AspS9I GGNCC 2 cut(s) 52, 62
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BccI CCATC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 52, 62
BmsI GCATC 3 cut(s) 4, 130, 138
BpuEI CTTGAG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse21I CCTNAGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 8, 63
BsiHKAI GWGCWC 1 cut(s) 267
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 8, 63
Bsp1286I GDGCHC 1 cut(s) 267
BspANI GGCC 2 cut(s) 8, 63
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 87
BstHHI GCGC 2 cut(s) 88, 121
BstMWI GCNNNNNNNGC 2 cut(s) 14, 125
BstXI CCANNNNNNTGG 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 2 cut(s) 8, 63
BtsCI GGATG 1 cut(s) 87
CfoI GCGC 2 cut(s) 88, 121
Cfr13I GGNCC 2 cut(s) 52, 62
CviAII CATG 3 cut(s) 101, 125, 241
CviJI RGCY 5 cut(s) 8, 63, 202, 232, 265
CviKI_1 RGCY 5 cut(s) 8, 63, 202, 232, 265
DdeI CTNAG 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 3 cut(s) 104, 128, 244
FaiI YATR 5 cut(s) 48, 102, 126, 242, 248
FalI AAGNNNNNCTT 4 cut(s) 58, 90, 216, 248
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 100, 124, 240
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 267
GlaI GCGC 2 cut(s) 87, 120
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 8, 63
HhaI GCGC 2 cut(s) 88, 121
Hin1II CATG 3 cut(s) 104, 128, 244
Hin6I GCGC 2 cut(s) 86, 119
HinP1I GCGC 2 cut(s) 86, 119
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 230
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 53, 102
HpyCH4V TGCA 3 cut(s) 104, 128, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 125
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 3 cut(s) 104, 128, 244
HspAI GCGC 2 cut(s) 86, 119
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 2 cut(s) 90, 219
LweI GCATC 3 cut(s) 4, 130, 138
MboII GAAGA 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 267
MlsI TGGCCA 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 8
MnlI CCTC 4 cut(s) 38, 43, 47, 177
Mox20I TGGCCA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 8
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 2 cut(s) 214, 245
Msp20I TGGCCA 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 14, 125
NlaIII CATG 3 cut(s) 104, 128, 244
Psp124BI GAGCTC 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 52, 62
RseI CAYNNNNRTG 2 cut(s) 214, 245
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 198
Sau96I GGNCC 2 cut(s) 52, 62
SduI GDGCHC 1 cut(s) 267
SetI ASST 4 cut(s) 54, 204, 234, 267
SfaNI GCATC 3 cut(s) 4, 130, 138
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 214, 245
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SstI GAGCTC 1 cut(s) 267
TaqI TCGA 2 cut(s) 30, 169
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.