Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001035.1

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Reverse (-)

88129 .. 88920

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001035.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtttatgggattgtgcaaagagctctccccattcaagatgaatgacgaagacatgccaaatatgggagtgactatccaattctcgagttgttttcacttgctggactccttgtaccgcctgatcacccccaagttagtagccgagccatcggaaatcatagaagccgtgggatatgaggccgcacaacaacagaagggaaaatcatcagttaattcgaatttcgtcaaacaatttctgaaacaggtacggaagctgctatcgaagttgaataaaggcccaatacctcttctaagaaaaattccaatatctggacctgtaaaagtgatatccgacctgccttggactatcctctttgaccttctttccacccaagacaaagaagcagtcaaacccaaagatgacagttcgagcaatggcattagtaaaccgccgaagatagaggagatcaccatcccatcagtctccgatctctcaaaatctggtgtcaagttcttggccggcggaaatagaatttcagacatctctttcaatgttgaaactggctcatttaccctcccgattactagcttagatgggaacacaggggtgatcctgagaaacttggtggcttatgaagcatcaagtgtatcggggccattggttttcactcgctacaccgagttgatgaacgggatcatagacaccgaggaggatgtcaagttgcttagagagaagcgtatcatcatgaaccatttgaagagtgatgaagaagtggcaaatctgctcaatggcatgagcaggtccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

263

Amino Acids

29.04

Weight (kDa)

6.76

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	345, 771
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	4 cut(s)	118, 183, 431, 504
AclWI	GGATC	2 cut(s)	586, 683
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	3 cut(s)	220, 300, 513
AfaI	GTAC	2 cut(s)	116, 249
AfiI	CCNNNNNNNGG	2 cut(s)	65, 311
AgsI	TTSAA	5 cut(s)	37, 271, 532, 539, 739
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	3 cut(s)	25, 256, 570
AluI	AGCT	3 cut(s)	25, 256, 570
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	2 cut(s)	586, 683
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	4 cut(s)	180, 277, 498, 635
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	3 cut(s)	220, 300, 513
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspS9I	GGNCC	4 cut(s)	278, 314, 635, 783
AsuHPI	GGTGA	3 cut(s)	118, 442, 601
AsuII	TTCGAA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	314, 783
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	4 cut(s)	157, 461, 466, 569
BceAI	ACGGC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	567
BfuAI	ACCTGC	2 cut(s)	345, 771
BisI	GCNGC	2 cut(s)	183, 257
BlsI	GCNGC	2 cut(s)	184, 258
Bme18I	GGWCC	2 cut(s)	314, 783
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	4 cut(s)	278, 314, 635, 783
BmiI	GGNNCC	1 cut(s)	636
BmsI	GCATC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	168, 341, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 311
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	168, 341, 687
BseGI	GGATG	2 cut(s)	453, 700
BseJI	GATNNNNATC	1 cut(s)	452
BseLI	CCNNNNNNNGG	2 cut(s)	65, 311
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	2 cut(s)	458, 704
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	4 cut(s)	182, 279, 500, 637
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	65, 311
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	4 cut(s)	182, 279, 500, 637
BsoBI	CYCGRG	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	123, 447, 469, 591, 675
BspACI	CCGC	4 cut(s)	118, 183, 431, 504
BspANI	GGCC	4 cut(s)	182, 279, 500, 637
BspCNI	CTCAG	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	636
BspMI	ACCTGC	2 cut(s)	345, 771
BspPI	GGATC	2 cut(s)	586, 683
BspT104I	TTCGAA	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	547
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	168, 341, 687
BssMI	GATC	5 cut(s)	123, 447, 469, 591, 675
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	294, 734
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	4 cut(s)	293, 571, 596, 707
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	453, 700
BstKTI	GATC	5 cut(s)	126, 450, 472, 594, 678
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	5 cut(s)	123, 447, 469, 591, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	182, 279, 500, 637
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	453, 700
BveI	ACCTGC	2 cut(s)	345, 771
Cac8I	GCNNGC	1 cut(s)	502
CciI	TCATGA	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	4 cut(s)	278, 314, 635, 783
Csp6I	GTAC	2 cut(s)	115, 248
CviAII	CATG	3 cut(s)	55, 727, 775
CviQI	GTAC	2 cut(s)	115, 248
DdeI	CTNAG	4 cut(s)	293, 571, 596, 707
DpnI	GATC	5 cut(s)	125, 449, 471, 593, 677
DpnII	GATC	5 cut(s)	123, 447, 469, 591, 675
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	294, 734
EarI	CTCTTC	2 cut(s)	294, 734
EciI	GGCGGA	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	314, 783
Eco53kI	GAGCTC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	58, 730, 778
FaiI	YATR	9 cut(s)	8, 56, 65, 161, 177, 615, 680, 728, 776
FatI	CATG	3 cut(s)	54, 726, 774
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	183, 257
FokI	GGATG	2 cut(s)	440, 707
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	183, 257
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	2 cut(s)	183, 257
HaeIII	GGCC	4 cut(s)	182, 279, 500, 637
HapII	CCGG	1 cut(s)	501
Hin1II	CATG	3 cut(s)	58, 730, 778
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	3 cut(s)	118, 442, 601
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	5 cut(s)	154, 240, 334, 469, 520
Hpy188III	TCNNGA	6 cut(s)	37, 85, 312, 559, 595, 727
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	2 cut(s)	190, 371
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	4 cut(s)	293, 571, 596, 707
Hsp92II	CATG	3 cut(s)	58, 730, 778
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	5 cut(s)	123, 447, 469, 591, 675
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	125, 449, 471, 593, 677
MboI	GATC	5 cut(s)	123, 447, 469, 591, 675
MboII	GAAGA	5 cut(s)	62, 281, 448, 751, 761
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	6 cut(s)	80, 214, 220, 233, 300, 513
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	172, 297, 362, 436, 566, 682, 685
MroNI	GCCGGC	1 cut(s)	500
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	587
MspI	CCGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	617
NaeI	GCCGGC	1 cut(s)	502
NdeII	GATC	5 cut(s)	123, 447, 469, 591, 675
NgoMIV	GCCGGC	1 cut(s)	500
NlaIII	CATG	3 cut(s)	58, 730, 778
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	218
OliI	CACNNNNGTG	1 cut(s)	587
PaeR7I	CTCGAG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	726
PdiI	GCCGGC	1 cut(s)	502
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	184, 258
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	4 cut(s)	278, 314, 635, 783
RsaI	GTAC	2 cut(s)	116, 249
RsaNI	GTAC	2 cut(s)	115, 248
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	183, 257
Sau3AI	GATC	5 cut(s)	123, 447, 469, 591, 675
Sau96I	GGNCC	4 cut(s)	278, 314, 635, 783
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	27, 249, 258, 289, 319, 339, 363, 572, 785
SfaNI	GCATC	1 cut(s)	629
Sfr274I	CTCGAG	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	2 cut(s)	314, 783
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	6 cut(s)	80, 214, 220, 233, 300, 513
SsiI	CCGC	4 cut(s)	118, 183, 431, 504
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	4 cut(s)	86, 218, 263, 410
TasI	AATT	6 cut(s)	80, 214, 220, 233, 300, 513
TauI	GCSGC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	56, 630, 683, 743, 762
TspGWI	ACGGA	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	314, 783
XapI	RAATTY	3 cut(s)	220, 300, 513
XceI	RCATGY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	85
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.