Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Forward (+)

44382033 .. 44383311

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG308800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGATGGCCATTGATGCTTCGTTTTTCCTCAAAATCCTCCAAGTCTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAACGATGGCGCATTTGGTTGATCATGCGGGAAGGAAGTCAGTGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCTCGATTTGTTTTGAAAAAAGTGTTGAAGTTTAAGCTCCCAGCATTGGAATGTGCCAAAGATAAGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCCCCATTCAAGATGAATGACGAAGACATGCCAAATATGGGAGTACGGAAGCTGCTATCGAAGTTGAATAAAGGCCCAATACCTCTTCTGAGAAAAATTCCAATATCTGGACCTGTAAAAGTGATATCTGACCTGCCTTGGACTATCCTCTTTGACCTTCTTTCCACCCAAGACAAAGAAGCAGTCAAACCCGAAGATGACAGTTCGAGCAATGACATTAGCAAACCGCCGAAGATAGAGGAGATCACCATCACATCAGTCTCCGATCTCTCAAAATCTTGTGTCAAGTTCTTGGCCGGCGGAATTAAAATTTCAGACATCTCTTTCAATGCTGAAACTGGCTCATTTACCCTCCCGATTACTAGCTTAGATGGGAACACAGGAGTGATCCTGAGAAACTTGGTGGCCTATGAAGCATCAAGTGTATCGGGGCCATTGGTTTTCACTCGCTACACCGAGTTAATGAACGGGATCATAGACACCGAGGAGGATGTCAAGTTGCTTAGAGAGAAGCGTATCATCGTGAACCATTTGAAGAGTGATGAAGAAGTGGCAAATCTGTTCAATGGCATGAGCAAGTCCATTAGATTGACCAAAGTGCCCTCCTTGGATAAGGCCGTTACTGGCTTTCCTCGCTACCATTTTGCTCCTGCTCTTGATGACATTGCAAGCAGTCTGCTCAGTGCCTCAGTCTATAGGTACAGTAGCATATTTCTAAGGCTTATCAACACCACAGTAACCATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

338

Amino Acids

37.52

Weight (kDa)

8.57

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	1 - 302	2.5e-54	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	374
AciI	CCGC	3 cut(s)	104, 494, 567
AclWI	GGATC	2 cut(s)	649, 746
AcoI	YGGCCR	2 cut(s)	6, 561
AcsI	RAATTY	2 cut(s)	363, 576
AfaI	GTAC	2 cut(s)	312, 968
AfiI	CCNNNNNNNGG	3 cut(s)	211, 305, 374
AgsI	TTSAA	8 cut(s)	78, 181, 193, 277, 334, 595, 802, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AleI	CACNNNNGTG	1 cut(s)	650
AluBI	AGCT	5 cut(s)	202, 232, 265, 319, 633
AluI	AGCT	5 cut(s)	202, 232, 265, 319, 633
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	649, 746
AoxI	GGCC	7 cut(s)	6, 61, 340, 561, 672, 698, 882
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	2 cut(s)	363, 576
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	5 cut(s)	52, 62, 341, 377, 698
AsuHPI	GGTGA	2 cut(s)	157, 505
AvaII	GGWCC	2 cut(s)	52, 377
AxyI	CCTNAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	870
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	3 cut(s)	76, 524, 632
BceAI	ACGGC	1 cut(s)	869
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	961
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme18I	GGWCC	2 cut(s)	52, 377
BmgT120I	GGNCC	5 cut(s)	52, 62, 341, 377, 698
BmiI	GGNNCC	1 cut(s)	699
BmsI	GCATC	4 cut(s)	4, 130, 138, 692
BpiI	GAAGAC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	404, 750, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 305, 374
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	610, 895
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	484, 930
Bse8I	GATNNNNATC	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	404, 750, 873
BseGI	GGATG	1 cut(s)	763
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	211, 305, 374
BseMI	GCAATG	2 cut(s)	484, 930
BseMII	CTCAG	4 cut(s)	347, 650, 961, 969
BseNI	ACTGG	2 cut(s)	610, 895
BseRI	GAGGAG	2 cut(s)	521, 767
BseSI	GKGCMC	1 cut(s)	870
BseXI	GCAGC	1 cut(s)	306
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	7 cut(s)	8, 63, 342, 563, 674, 700, 884
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	211, 305, 374
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	7 cut(s)	8, 63, 342, 563, 674, 700, 884
Bsp1286I	GDGCHC	2 cut(s)	267, 870
Bsp143I	GATC	5 cut(s)	97, 510, 532, 654, 738
BspACI	CCGC	3 cut(s)	104, 494, 567
BspANI	GGCC	7 cut(s)	8, 63, 342, 563, 674, 700, 884
BspCNI	CTCAG	4 cut(s)	348, 651, 960, 968
BspLI	GGNNCC	1 cut(s)	699
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	649, 746
BsrDI	GCAATG	2 cut(s)	484, 930
BsrFI	RCCGGY	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	610, 895
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	404, 750, 873
BssMI	GATC	5 cut(s)	97, 510, 532, 654, 738
BssT1I	CCWWGG	2 cut(s)	404, 873
Bst4CI	ACNGT	3 cut(s)	470, 971, 1003
Bst6I	CTCTTC	2 cut(s)	357, 797
BstC8I	GCNNGC	2 cut(s)	565, 937
BstDEI	CTNAG	9 cut(s)	134, 356, 634, 659, 770, 947, 955, 983, 1014
BstF5I	GGATG	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	5 cut(s)	100, 513, 535, 657, 741
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	5 cut(s)	97, 510, 532, 654, 738
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 680, 900
BstNSI	RCATGY	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	961
BstSLI	GKGCMC	1 cut(s)	870
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	7 cut(s)	8, 63, 342, 563, 674, 700, 884
BtsCI	GGATG	1 cut(s)	763
BtsIMutI	CAGTG	2 cut(s)	123, 955
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	565, 937
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	5 cut(s)	52, 62, 341, 377, 698
Csp6I	GTAC	2 cut(s)	311, 967
CviAII	CATG	5 cut(s)	101, 125, 241, 295, 838
CviQI	GTAC	2 cut(s)	311, 967
DdeI	CTNAG	9 cut(s)	134, 356, 634, 659, 770, 947, 955, 983, 1014
DpnI	GATC	5 cut(s)	99, 512, 534, 656, 740
DpnII	GATC	5 cut(s)	97, 510, 532, 654, 738
EaeI	YGGCCR	2 cut(s)	6, 561
Eam1104I	CTCTTC	2 cut(s)	357, 797
EarI	CTCTTC	2 cut(s)	357, 797
EciI	GGCGGA	1 cut(s)	582
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	404, 873
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	52, 377
Eco53kI	GAGCTC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	404, 873
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	404, 873
FaeI	CATG	5 cut(s)	104, 128, 244, 298, 841
FalI	AAGNNNNNCTT	4 cut(s)	58, 90, 216, 248
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	100, 124, 240, 294, 837
FauI	CCCGC	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	1 cut(s)	770
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	320
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	7 cut(s)	8, 63, 342, 563, 674, 700, 884
HapII	CCGG	1 cut(s)	564
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	104, 128, 244, 298, 841
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	2 cut(s)	157, 505
Hpy166II	GTNNAC	1 cut(s)	793
Hpy188I	TCNGA	4 cut(s)	357, 397, 532, 583
Hpy188III	TCNNGA	6 cut(s)	277, 375, 622, 658, 790, 923
Hpy8I	GTNNAC	1 cut(s)	793
HpyAV	CCTTC	3 cut(s)	53, 102, 434
HpyCH4III	ACNGT	3 cut(s)	470, 971, 1003
HpyCH4V	TGCA	4 cut(s)	121, 128, 258, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 680, 900
HpyF3I	CTNAG	9 cut(s)	134, 356, 634, 659, 770, 947, 955, 983, 1014
Hsp92II	CATG	5 cut(s)	104, 128, 244, 298, 841
HspAI	GCGC	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	97, 510, 532, 654, 738
LmnI	GCTCC	2 cut(s)	207, 919
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	4 cut(s)	4, 130, 138, 692
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	886, 1003
MalI	GATC	5 cut(s)	99, 512, 534, 656, 740
MboI	GATC	5 cut(s)	97, 510, 532, 654, 738
MboII	GAAGA	7 cut(s)	66, 302, 344, 473, 511, 814, 824
MhlI	GDGCHC	2 cut(s)	267, 870
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	3 cut(s)	363, 570, 576
MluNI	TGGCCA	1 cut(s)	8
Mox20I	TGGCCA	1 cut(s)	8
MroNI	GCCGGC	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	3 cut(s)	198, 573, 728
MslI	CAYNNNNRTG	3 cut(s)	214, 245, 650
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	14, 680, 900
NaeI	GCCGGC	1 cut(s)	565
NdeII	GATC	5 cut(s)	97, 510, 532, 654, 738
NgoMIV	GCCGGC	1 cut(s)	563
NlaIII	CATG	5 cut(s)	104, 128, 244, 298, 841
NlaIV	GGNNCC	1 cut(s)	699
NspI	RCATGY	1 cut(s)	298
OliI	CACNNNNGTG	1 cut(s)	650
PdiI	GCCGGC	1 cut(s)	565
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	5 cut(s)	52, 62, 341, 377, 698
RsaI	GTAC	2 cut(s)	312, 968
RsaNI	GTAC	2 cut(s)	311, 967
RseI	CAYNNNNRTG	3 cut(s)	214, 245, 650
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	198, 573, 728
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	5 cut(s)	97, 510, 532, 654, 738
Sau96I	GGNCC	5 cut(s)	52, 62, 341, 377, 698
SduI	GDGCHC	2 cut(s)	267, 870
SfaNI	GCATC	4 cut(s)	4, 130, 138, 692
SfcI	CTRYAG	1 cut(s)	961
SinI	GGWCC	2 cut(s)	52, 377
SmiMI	CAYNNNNRTG	3 cut(s)	214, 245, 650
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	363, 570, 576
SsiI	CCGC	3 cut(s)	104, 494, 567
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	404, 873
TaaI	ACNGT	3 cut(s)	470, 971, 1003
TaqI	TCGA	3 cut(s)	169, 326, 473
TasI	AATT	3 cut(s)	363, 570, 576
Tru1I	TTAA	3 cut(s)	198, 573, 728
Tru9I	TTAA	3 cut(s)	198, 573, 728
TscAI	CASTG	2 cut(s)	123, 955
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	296, 693, 746, 825
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	2 cut(s)	123, 955
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	52, 377
XapI	RAATTY	2 cut(s)	363, 576
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.