Rw6G001430

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000833
Physical Location & Seq
Forward (+)
2250737 .. 2252376
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001430.1

Sequence Viewer

Length: 1611 bp
ATGTCTTCTCTCCAACCAACATTCTCTTCCAATTCCAGTTCAAACTTCAATGAGCTTCAATGGGTGATTCAAATCCAAAAATTCCTAGAGGAAGAGTTCGAGCATGATATCGAAATCCCTATCTCCATTTTCAACGTCCCCAAATCCCTCATGGCTAGTGACCCAGAATCGTACACCCCTCAAGTGGTTGCGATTGGTCCTTACCATCATTGGCGTCCGGAGCTGTATGAGATGGTGAGGTACAAAGTGGCTGCAGCTCAAAGAACCCAAAAGCAGCTCCAAACCCTCAAATTCCAGGACCTTGTTGACCAATTGACAAGGTTCGAGCTGAGGATTCGGGCTTGTTACCACAAGTACCTGGAGTTTAATGGCGAGACATTGGGGTGGATGATGGCTATTGATGCTTCGTTTTTCTTCGAAATCCTCCAAGTCTATGCAGTCCAAGAAGGGAACACTTCGACGAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACTATGCAGGAAGGAAGTCAGCGCATCATGCCATCCTTAGGGACTTGCTGATGCTTGAGAACCAAATGCCACTATTTGTTTTAAGAGAAGTGTTGGCATTTCAGTTACCAACGTTGGAATGCACCGACAATATGCTTTTTTCCATGTTTATGGGACTGTGCAAAGAGCTCTCCCCATTCAAGATGAATGATGAAGCTATGCCAAAGTTCCAAGTGTCGAGTTGTTGTCACTTGCTAGACTTTTTATACCGCATGATCACCCCCAAATTAGAAACTAGACCGTCCGAAATTGCAGAAACCGAGGATGGTACGGCCACACCACACGAGGGAAAGTCTTCAGATAACTCGAATTTCCTCAAACAATTTCTGGAGAAGGTAGGGAAGCTGCTATTGAAGTTGAACAAGGGCCCGATACGTCTTTTGAAAAAAATTCTAAATTCTCGACCTGTAAAAGTGTTACGCAAACTGCCCGCAATTTGGAAACAACCTCTCGATCAAACCCGGCCCGGAGATGATAAATCAAGCAATAGACCACCGTTGATAGAGGAGATCACCATCCCATCAGTCTCCAAACTCTCAAAATCAGGTGTCAAGTTCTTGCCCGCAAGTAGTATTTCAACCATCTCTTTCGATGCTAGAACTTGCTCATTTTACCTCCCGATTACAAGCTTAGATGGGAACACAGAGGTAATCCTGAGAAACTTGGTGGCCTACGAGGCATCAACTGCATCGGGGCCATTGGTTTTTACTCGCTACACCGAGTTGATGAACGGAATCATAGACACCAAGGAGGACGCCAAGTTGCTTAGAGAGAAGGGTATCATCTTGAACCGTTTGAAGAGTGATGAAGAAGTGGCAAATCTGTTTAATGGCATGAGCAGGTCCATTAGATTGACCAAAGTGCCCTTCTTGGATAAGGCAATCAAAGATGCCAACAAGTATTACCATGGTAGATGGAAGGTGAAGATAAGGAAGTCTTTGAAAACTTATGTGTTAGGTTCTTGGCAATTTCTGGCTTCGCTCGCTACCATTTTTCTCCTGCTCTTGATGACATTGGAAGCATTTTGCTCAGTCTATAGCTGCAGTCGCATGTTTCATATCAACACCACTAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

536

Amino Acids

61.4

Weight (kDa)

9.0

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 43 - 513 4.1e-103 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1362
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 3 cut(s) 742, 963, 1095
AclI AACGTT 1 cut(s) 605
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 5 cut(s) 80, 290, 841, 921, 928
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 2 cut(s) 214, 1287
AfaI GTAC 4 cut(s) 173, 242, 356, 802
AfiI CCNNNNNNNGG 4 cut(s) 184, 531, 818, 969
AjnI CCWGG 2 cut(s) 294, 357
AjuI GAANNNNNNNTTGG 4 cut(s) 10, 42, 1382, 1414
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 2 cut(s) 368, 1063
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 5 cut(s) 804, 898, 995, 1200, 1226
ApaI GGGCCC 1 cut(s) 902
ApeKI GCWGC 5 cut(s) 251, 254, 274, 877, 1572
ApoI RAATTY 5 cut(s) 80, 290, 841, 921, 928
Asp700I GAANNNNTTC 1 cut(s) 826
AspLEI GCGC 2 cut(s) 484, 517
AspS9I GGNCC 7 cut(s) 197, 298, 898, 899, 996, 1226, 1374
AsuC2I CCSGG 2 cut(s) 994, 999
AsuHPI GGTGA 5 cut(s) 76, 247, 742, 1036, 1465
AsuII TTCGAA 1 cut(s) 417
AvaII GGWCC 3 cut(s) 197, 298, 1374
AxyI CCTNAGG 1 cut(s) 530
BaeGI GKGCMC 2 cut(s) 902, 1398
BanII GRGCYC 2 cut(s) 663, 902
BauI CACGAG 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 663
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 5 cut(s) 238, 266, 286, 864, 1559
BceAI ACGGC 1 cut(s) 819
BciT130I CCWGG 2 cut(s) 296, 359
BclI TGATCA 1 cut(s) 747
BcnI CCSGG 2 cut(s) 994, 999
BcoDI GTCTC 2 cut(s) 368, 1063
BfaI CTAG 5 cut(s) 86, 156, 728, 768, 1128
BfmI CTRYAG 3 cut(s) 252, 1567, 1573
BfuAI ACCTGC 1 cut(s) 1362
BglI GCCNNNNNGGC 1 cut(s) 1208
BisI GCNGC 5 cut(s) 252, 255, 275, 878, 1573
BlsI GCNGC 5 cut(s) 253, 256, 276, 879, 1574
Bme1390I CCNGG 4 cut(s) 296, 359, 994, 999
Bme18I GGWCC 3 cut(s) 197, 298, 1374
BmgT120I GGNCC 7 cut(s) 197, 298, 898, 899, 996, 1226, 1374
BmiI GGNNCC 2 cut(s) 900, 1227
BmrFI CCNGG 4 cut(s) 296, 359, 994, 999
BmsI GCATC 7 cut(s) 391, 526, 534, 1114, 1220, 1229, 1411
BpiI GAAGAC 1 cut(s) 819
BpmI CTGGAG 2 cut(s) 380, 881
Bpu10I CCTNAGC 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 165, 569
BpuMI CCSGG 2 cut(s) 994, 999
BsaBI GATNNNNATC 2 cut(s) 71, 1046
BsaHI GRCGYC 2 cut(s) 214, 1287
BsaJI CCNNGG 3 cut(s) 792, 1278, 1438
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 531, 818, 969
Bse1I ACTGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 530
Bse8I GATNNNNATC 2 cut(s) 71, 1046
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 2 cut(s) 296, 359
BseDI CCNNGG 3 cut(s) 792, 1278, 1438
BseGI GGATG 5 cut(s) 393, 483, 525, 802, 1047
BseJI GATNNNNATC 2 cut(s) 71, 1046
BseLI CCNNNNNNNGG 4 cut(s) 184, 531, 818, 969
BseMII CTCAG 3 cut(s) 320, 1178, 1575
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 1052
BseSI GKGCMC 2 cut(s) 902, 1398
BseXI GCAGC 5 cut(s) 238, 266, 286, 864, 1559
BshFI GGCC 5 cut(s) 806, 900, 997, 1202, 1228
BsiHKAI GWGCWC 1 cut(s) 663
BsiSI CCGG 3 cut(s) 218, 994, 999
BslFI GGGAC 3 cut(s) 122, 548, 660
BslI CCNNNNNNNGG 4 cut(s) 184, 531, 818, 969
BsmAI GTCTC 2 cut(s) 368, 1063
BsmFI GGGAC 3 cut(s) 122, 548, 660
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 5 cut(s) 806, 900, 997, 1202, 1228
Bsp119I TTCGAA 1 cut(s) 417
Bsp120I GGGCCC 1 cut(s) 898
Bsp1286I GDGCHC 3 cut(s) 663, 902, 1398
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 747, 985, 1041
Bsp19I CCATGG 1 cut(s) 1438
BspACI CCGC 3 cut(s) 742, 963, 1095
BspANI GGCC 5 cut(s) 806, 900, 997, 1202, 1228
BspCNI CTCAG 3 cut(s) 321, 1179, 1574
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 900, 1227
BspMAI CTGCAG 2 cut(s) 256, 1577
BspMI ACCTGC 1 cut(s) 1362
BspT104I TTCGAA 1 cut(s) 417
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 3 cut(s) 792, 1278, 1438
BssMI GATC 3 cut(s) 747, 985, 1041
BssNI GRCGYC 2 cut(s) 214, 1287
BssSI CACGAG 1 cut(s) 815
BssT1I CCWWGG 2 cut(s) 1278, 1438
Bst2BI CACGAG 1 cut(s) 815
Bst2UI CCWGG 2 cut(s) 296, 359
Bst4CI ACNGT 4 cut(s) 651, 774, 1029, 1325
Bst6I CTCTTC 3 cut(s) 31, 87, 1325
BstACI GRCGYC 2 cut(s) 214, 1287
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 963, 1095, 1515
BstDEI CTNAG 6 cut(s) 329, 530, 1162, 1187, 1298, 1561
BstDSI CCRYGG 1 cut(s) 1438
BstF5I GGATG 5 cut(s) 393, 483, 525, 802, 1047
BstHHI GCGC 2 cut(s) 484, 517
BstKTI GATC 3 cut(s) 750, 988, 1044
BstMAI GTCTC 2 cut(s) 368, 1063
BstMBI GATC 3 cut(s) 747, 985, 1041
BstMWI GCNNNNNNNGC 7 cut(s) 220, 401, 521, 1208, 1217, 1514, 1578
BstNI CCWGG 2 cut(s) 296, 359
BstNSI RCATGY 1 cut(s) 1585
BstSCI CCNGG 4 cut(s) 294, 357, 992, 997
BstSFI CTRYAG 3 cut(s) 252, 1567, 1573
BstSLI GKGCMC 2 cut(s) 902, 1398
BstV1I GCAGC 5 cut(s) 238, 266, 286, 864, 1559
BstV2I GAAGAC 1 cut(s) 819
BstXI CCANNNNNNTGG 1 cut(s) 643
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 5 cut(s) 806, 900, 997, 1202, 1228
BtgI CCRYGG 1 cut(s) 1438
BtsCI GGATG 5 cut(s) 393, 483, 525, 802, 1047
BveI ACCTGC 1 cut(s) 1362
Cac8I GCNNGC 3 cut(s) 963, 1095, 1515
CfoI GCGC 2 cut(s) 484, 517
Cfr13I GGNCC 7 cut(s) 197, 298, 898, 899, 996, 1226, 1374
CseI GACGC 2 cut(s) 203, 1295
Csp6I GTAC 4 cut(s) 172, 241, 355, 801
CviAII CATG 8 cut(s) 104, 151, 521, 637, 745, 1366, 1439, 1582
CviQI GTAC 4 cut(s) 172, 241, 355, 801
DdeI CTNAG 6 cut(s) 329, 530, 1162, 1187, 1298, 1561
DpnI GATC 3 cut(s) 749, 987, 1043
DpnII GATC 3 cut(s) 747, 985, 1041
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 3 cut(s) 31, 87, 1325
EarI CTCTTC 3 cut(s) 31, 87, 1325
Ecl136II GAGCTC 1 cut(s) 661
Eco130I CCWWGG 2 cut(s) 1278, 1438
Eco24I GRGCYC 2 cut(s) 663, 902
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 197, 298, 1374
Eco53kI GAGCTC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 813
Eco81I CCTNAGG 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 661
EcoO109I RGGNCCY 2 cut(s) 298, 898
EcoRII CCWGG 2 cut(s) 294, 357
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 1278, 1438
EcoT38I GRGCYC 2 cut(s) 663, 902
ErhI CCWWGG 2 cut(s) 1278, 1438
FaeI CATG 8 cut(s) 107, 154, 524, 640, 748, 1369, 1442, 1585
FalI AAGNNNNNCTT 2 cut(s) 1453, 1485
FaqI GGGAC 3 cut(s) 122, 548, 660
FatI CATG 8 cut(s) 103, 150, 520, 636, 744, 1365, 1438, 1581
FauI CCCGC 2 cut(s) 970, 1102
FbaI TGATCA 1 cut(s) 747
Fnu4HI GCNGC 5 cut(s) 252, 255, 275, 878, 1573
FokI GGATG 5 cut(s) 400, 490, 512, 809, 1034
FriOI GRGCYC 2 cut(s) 663, 902
Fsp4HI GCNGC 5 cut(s) 252, 255, 275, 878, 1573
FspBI CTAG 5 cut(s) 86, 156, 728, 768, 1128
GlaI GCGC 2 cut(s) 483, 516
GluI GCNGC 5 cut(s) 252, 255, 275, 878, 1573
GsuI CTGGAG 2 cut(s) 380, 881
HaeIII GGCC 5 cut(s) 806, 900, 997, 1202, 1228
HapII CCGG 3 cut(s) 218, 994, 999
HgaI GACGC 2 cut(s) 203, 1295
HhaI GCGC 2 cut(s) 484, 517
Hin1I GRCGYC 2 cut(s) 214, 1287
Hin1II CATG 8 cut(s) 107, 154, 524, 640, 748, 1369, 1442, 1585
Hin6I GCGC 2 cut(s) 482, 515
HinP1I GCGC 2 cut(s) 482, 515
HincII GTYRAC 2 cut(s) 307, 493
HindII GTYRAC 2 cut(s) 307, 493
HindIII AAGCTT 1 cut(s) 1159
HinfI GANTC 4 cut(s) 67, 167, 334, 1266
HpaII CCGG 3 cut(s) 218, 994, 999
HphI GGTGA 5 cut(s) 76, 247, 742, 1036, 1465
Hpy166II GTNNAC 3 cut(s) 174, 307, 493
Hpy188I TCNGA 2 cut(s) 778, 832
Hpy188III TCNNGA 9 cut(s) 218, 673, 860, 933, 983, 1150, 1186, 1318, 1537
Hpy8I GTNNAC 3 cut(s) 174, 307, 493
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 6 cut(s) 440, 498, 859, 1300, 1408, 1444
HpyCH4III ACNGT 4 cut(s) 651, 774, 1029, 1325
HpyCH4IV ACGT 3 cut(s) 135, 605, 907
HpyCH4V TGCA 8 cut(s) 254, 437, 500, 615, 654, 785, 1220, 1575
HpyF10VI GCNNNNNNNGC 7 cut(s) 220, 401, 521, 1208, 1217, 1514, 1578
HpyF3I CTNAG 6 cut(s) 329, 530, 1162, 1187, 1298, 1561
HpySE526I ACGT 3 cut(s) 135, 605, 907
Hsp92I GRCGYC 2 cut(s) 214, 1287
Hsp92II CATG 8 cut(s) 107, 154, 524, 640, 748, 1369, 1442, 1585
HspAI GCGC 2 cut(s) 482, 515
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 3 cut(s) 747, 985, 1041
LmnI GCTCC 2 cut(s) 220, 282
Lsp1109I GCAGC 5 cut(s) 238, 266, 286, 864, 1559
LweI GCATC 7 cut(s) 391, 526, 534, 1114, 1220, 1229, 1411
MaeI CTAG 5 cut(s) 86, 156, 728, 768, 1128
MaeII ACGT 3 cut(s) 135, 605, 907
MaeIII GTNAC 5 cut(s) 158, 344, 597, 719, 948
MalI GATC 3 cut(s) 749, 987, 1043
MboI GATC 3 cut(s) 747, 985, 1041
MboII GAAGA 8 cut(s) 18, 104, 406, 462, 819, 1342, 1352, 1468
MfeI CAATTG 1 cut(s) 311
MhlI GDGCHC 3 cut(s) 663, 902, 1398
MmeI TCCRAC 2 cut(s) 37, 588
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 826
MseI TTAA 3 cut(s) 366, 575, 1359
MslI CAYNNNNRTG 2 cut(s) 382, 641
MspI CCGG 3 cut(s) 218, 994, 999
MspR9I CCNGG 4 cut(s) 296, 359, 994, 999
MunI CAATTG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 2 cut(s) 296, 359
MwoI GCNNNNNNNGC 7 cut(s) 220, 401, 521, 1208, 1217, 1514, 1578
NciI CCSGG 2 cut(s) 994, 999
NcoI CCATGG 1 cut(s) 1438
NdeII GATC 3 cut(s) 747, 985, 1041
NlaIII CATG 8 cut(s) 107, 154, 524, 640, 748, 1369, 1442, 1585
NlaIV GGNNCC 2 cut(s) 900, 1227
NmuCI GTSAC 2 cut(s) 158, 719
NspI RCATGY 1 cut(s) 1585
NspV TTCGAA 1 cut(s) 417
PctI GAATGC 1 cut(s) 617
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 4 cut(s) 67, 167, 334, 1266
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 5 cut(s) 253, 256, 276, 879, 1574
PpuMI RGGWCCY 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 663
Psp1406I AACGTT 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 294, 357
PspGI CCWGG 2 cut(s) 294, 357
PspN4I GGNNCC 2 cut(s) 900, 1227
PspOMI GGGCCC 1 cut(s) 898
PspPI GGNCC 7 cut(s) 197, 298, 898, 899, 996, 1226, 1374
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 2 cut(s) 256, 1577
RsaI GTAC 4 cut(s) 173, 242, 356, 802
RsaNI GTAC 4 cut(s) 172, 241, 355, 801
RseI CAYNNNNRTG 2 cut(s) 382, 641
SacI GAGCTC 1 cut(s) 663
SaqAI TTAA 3 cut(s) 366, 575, 1359
SatI GCNGC 5 cut(s) 252, 255, 275, 878, 1573
Sau3AI GATC 3 cut(s) 747, 985, 1041
Sau96I GGNCC 7 cut(s) 197, 298, 898, 899, 996, 1226, 1374
ScrFI CCNGG 4 cut(s) 296, 359, 994, 999
SduI GDGCHC 3 cut(s) 663, 902, 1398
SfaNI GCATC 7 cut(s) 391, 526, 534, 1114, 1220, 1229, 1411
SfcI CTRYAG 3 cut(s) 252, 1567, 1573
SfuI TTCGAA 1 cut(s) 417
SinI GGWCC 3 cut(s) 197, 298, 1374
SmiMI CAYNNNNRTG 2 cut(s) 382, 641
SmlI CTYRAG 2 cut(s) 180, 548
SmoI CTYRAG 2 cut(s) 180, 548
SsiI CCGC 3 cut(s) 742, 963, 1095
SspMI CTAG 5 cut(s) 86, 156, 728, 768, 1128
SstI GAGCTC 1 cut(s) 663
StyD4I CCNGG 4 cut(s) 294, 357, 992, 997
StyI CCWWGG 2 cut(s) 1278, 1438
TaaI ACNGT 4 cut(s) 651, 774, 1029, 1325
TaiI ACGT 3 cut(s) 138, 608, 910
TfiI GAWTC 4 cut(s) 67, 167, 334, 1266
Tru1I TTAA 3 cut(s) 366, 575, 1359
Tru9I TTAA 3 cut(s) 366, 575, 1359
TseFI GTSAC 2 cut(s) 158, 719
TseI GCWGC 5 cut(s) 251, 254, 274, 877, 1572
Tsp45I GTSAC 2 cut(s) 158, 719
TspDTI ATGAA 5 cut(s) 692, 699, 1274, 1353, 1577
TspGWI ACGGA 1 cut(s) 1278
VpaK11BI GGWCC 3 cut(s) 197, 298, 1374
XapI RAATTY 5 cut(s) 80, 290, 841, 921, 928
XceI RCATGY 1 cut(s) 1585
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 5 cut(s) 86, 156, 728, 768, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.