Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002879.1

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Forward (+)

14289 .. 15320

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002879.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgtttatgggattgtgcaaagagctctccccattcaagatgaatgacgaagacatgccaaatatgggagtgactatccaattctcgagttgttttcacttgctggactccttgtaccgcctgatcacccccaagttagtagccgagccatcggaaatcatagaagccgtgggatatgaggccgcacaacaacagaagggaaaatcatttgttaattttaatttcgtcaaacaatttctgaagcaggtacggaagctgctatcgaagttgaataaaggcccaatacctcttctgagaaaaactccaatatctggacctgtaaaagtgatatccgacctgccttggactatcctctttgaccttctttccacccaagacaaagaagcagtcaaacccgaagatgacagttcgagcaatgacattagtaaaccgccgaagatagaggaggtcaccatcccatcagtctccgatctctcaaaatctggtgtcaagttcttggccagaggaattagaatttcagacatctctttcaatgctgaaactggctcatttaccctcccgattactagcttagatgggaacacaggggtgatcctgagaaacttggtggcttgtgaagcatcaagtgtatcggggccattggttttcactcgctacaccgagttgatgaacaggatcatagacaccgaggaggatgtcaagtttcttagagagaagcgtatcatcatgaaccatttgaagagtgatgaagaagtggcaaatctgctcaatggcatgagcatgtccattagattgaccaaagtgccctccttggataaggtaatcgcagatgccaacgagtattacaatggtagatggaaagtgaagatgaggaagtttttgaacacttttgtgtatggttcctggccgttactggctttcctcactgccattttgctcctgctcttgatgacattgcaagcagtctgctcagtctataggcgcagtagcatatttcttaggcatatcaacaccacattcaccattacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

343

Amino Acids

38.63

Weight (kDa)

9.0

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	235, 345
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	3 cut(s)	118, 183, 431
AclWI	GGATC	2 cut(s)	586, 683
AcoI	YGGCCR	2 cut(s)	498, 905
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	2 cut(s)	116, 249
AfiI	CCNNNNNNNGG	2 cut(s)	65, 311
AgsI	TTSAA	5 cut(s)	37, 271, 532, 739, 883
AjnI	CCWGG	1 cut(s)	902
AleI	CACNNNNGTG	2 cut(s)	587, 890
AluBI	AGCT	3 cut(s)	25, 256, 570
AluI	AGCT	3 cut(s)	25, 256, 570
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	2 cut(s)	586, 683
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	5 cut(s)	180, 277, 498, 635, 905
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	513
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	3 cut(s)	278, 314, 635
AsuHPI	GGTGA	4 cut(s)	118, 442, 601, 1012
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	807
BalI	TGGCCA	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	5 cut(s)	157, 461, 466, 569, 849
BceAI	ACGGC	2 cut(s)	152, 892
BciT130I	CCWGG	1 cut(s)	904
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	976
BfuAI	ACCTGC	2 cut(s)	235, 345
BisI	GCNGC	2 cut(s)	183, 257
BlsI	GCNGC	2 cut(s)	184, 258
Bme1390I	CCNGG	1 cut(s)	904
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	278, 314, 635
BmiI	GGNNCC	2 cut(s)	636, 901
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	2 cut(s)	629, 820
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BsaJI	CCNNGG	4 cut(s)	168, 341, 687, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 311
Bse1I	ACTGG	2 cut(s)	547, 918
Bse3DI	GCAATG	2 cut(s)	421, 953
BseBI	CCWGG	1 cut(s)	904
BseDI	CCNNGG	4 cut(s)	168, 341, 687, 810
BseGI	GGATG	2 cut(s)	453, 700
BseLI	CCNNNNNNNGG	2 cut(s)	65, 311
BseMI	GCAATG	2 cut(s)	421, 953
BseMII	CTCAG	3 cut(s)	284, 587, 984
BseNI	ACTGG	2 cut(s)	547, 918
BseRI	GAGGAG	2 cut(s)	458, 704
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	5 cut(s)	182, 279, 500, 637, 907
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	65, 311
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	5 cut(s)	182, 279, 500, 637, 907
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	27, 807
Bsp143I	GATC	4 cut(s)	123, 469, 591, 675
BspACI	CCGC	3 cut(s)	118, 183, 431
BspANI	GGCC	5 cut(s)	182, 279, 500, 637, 907
BspCNI	CTCAG	3 cut(s)	285, 588, 983
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	2 cut(s)	636, 901
BspMI	ACCTGC	2 cut(s)	235, 345
BspPI	GGATC	2 cut(s)	586, 683
BsrDI	GCAATG	2 cut(s)	421, 953
BsrI	ACTGG	2 cut(s)	547, 918
BssECI	CCNNGG	4 cut(s)	168, 341, 687, 810
BssMI	GATC	4 cut(s)	123, 469, 591, 675
BssT1I	CCWWGG	2 cut(s)	341, 810
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	294, 734
BstC8I	GCNNGC	1 cut(s)	960
BstDEI	CTNAG	7 cut(s)	293, 571, 596, 707, 970, 998, 1029
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	2 cut(s)	453, 700
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	4 cut(s)	126, 472, 594, 678
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	4 cut(s)	123, 469, 591, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	1 cut(s)	904
BstNSI	RCATGY	2 cut(s)	58, 784
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	1 cut(s)	976
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	182, 279, 500, 637, 907
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	453, 700
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	1 cut(s)	924
BveI	ACCTGC	2 cut(s)	235, 345
Cac8I	GCNNGC	1 cut(s)	960
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	3 cut(s)	278, 314, 635
Csp6I	GTAC	2 cut(s)	115, 248
CviAII	CATG	4 cut(s)	55, 727, 775, 781
CviQI	GTAC	2 cut(s)	115, 248
DdeI	CTNAG	7 cut(s)	293, 571, 596, 707, 970, 998, 1029
DpnI	GATC	4 cut(s)	125, 471, 593, 677
DpnII	GATC	4 cut(s)	123, 469, 591, 675
EaeI	YGGCCR	2 cut(s)	498, 905
Eam1104I	CTCTTC	2 cut(s)	294, 734
EarI	CTCTTC	2 cut(s)	294, 734
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	341, 810
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	902
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	341, 810
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	341, 810
FaeI	CATG	4 cut(s)	58, 730, 778, 784
FatI	CATG	4 cut(s)	54, 726, 774, 780
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	183, 257
FokI	GGATG	2 cut(s)	440, 707
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	183, 257
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	2 cut(s)	183, 257
HaeIII	GGCC	5 cut(s)	182, 279, 500, 637, 907
HhaI	GCGC	1 cut(s)	984
Hin1II	CATG	4 cut(s)	58, 730, 778, 784
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	4 cut(s)	118, 442, 601, 1012
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	6 cut(s)	154, 240, 294, 334, 469, 520
Hpy188III	TCNNGA	7 cut(s)	37, 85, 312, 559, 595, 727, 946
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	2 cut(s)	190, 371
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	2 cut(s)	18, 958
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	7 cut(s)	293, 571, 596, 707, 970, 998, 1029
Hsp92II	CATG	4 cut(s)	58, 730, 778, 784
HspAI	GCGC	1 cut(s)	982
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	123, 469, 591, 675
LmnI	GCTCC	1 cut(s)	942
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	2 cut(s)	629, 820
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	3 cut(s)	70, 448, 909
MalI	GATC	4 cut(s)	125, 471, 593, 677
MboI	GATC	4 cut(s)	123, 469, 591, 675
MboII	GAAGA	7 cut(s)	62, 281, 410, 448, 751, 761, 877
MhlI	GDGCHC	2 cut(s)	27, 807
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	6 cut(s)	80, 214, 220, 233, 507, 513
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	2 cut(s)	213, 219
MslI	CAYNNNNRTG	3 cut(s)	587, 779, 890
Msp20I	TGGCCA	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	904
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeII	GATC	4 cut(s)	123, 469, 591, 675
NlaIII	CATG	4 cut(s)	58, 730, 778, 784
NlaIV	GGNNCC	2 cut(s)	636, 901
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	70, 448
NspI	RCATGY	2 cut(s)	58, 784
OliI	CACNNNNGTG	2 cut(s)	587, 890
PaeR7I	CTCGAG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	726
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	184, 258
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	902
PspEI	GGTNACC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	2 cut(s)	636, 901
PspPI	GGNCC	3 cut(s)	278, 314, 635
RsaI	GTAC	2 cut(s)	116, 249
RsaNI	GTAC	2 cut(s)	115, 248
RseI	CAYNNNNRTG	3 cut(s)	587, 779, 890
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	213, 219
SatI	GCNGC	2 cut(s)	183, 257
Sau3AI	GATC	4 cut(s)	123, 469, 591, 675
Sau96I	GGNCC	3 cut(s)	278, 314, 635
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	904
SduI	GDGCHC	2 cut(s)	27, 807
SfaNI	GCATC	2 cut(s)	629, 820
SfcI	CTRYAG	1 cut(s)	976
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	3 cut(s)	587, 779, 890
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	6 cut(s)	80, 214, 220, 233, 507, 513
SsiI	CCGC	3 cut(s)	118, 183, 431
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	902
StyI	CCWWGG	2 cut(s)	341, 810
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	3 cut(s)	86, 263, 410
TasI	AATT	6 cut(s)	80, 214, 220, 233, 507, 513
TauI	GCSGC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	213, 219
Tru9I	TTAA	2 cut(s)	213, 219
TscAI	CASTG	1 cut(s)	931
TseFI	GTSAC	2 cut(s)	70, 448
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	70, 448
TspDTI	ATGAA	4 cut(s)	56, 683, 743, 762
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	931
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	2 cut(s)	58, 784
XhoI	CTCGAG	1 cut(s)	85
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.