Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Forward (+)

29462795 .. 29464809

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTTTCTCAAAAAAAGTCCCCCTTCTTCGTCCGGCGGCGTGCCCTAAGGGCTCTGTTGTCGGACGGGCTGTGTTGTTCCGCCTACGTTGGTGGAGGTAGTGGTGTCCTCACTTGCAGGGGGTTCGACCTGGGCCGCCGCGAATTGAGGAAGGTGGAGGAGGAGATCATGGTCACTGTTAGGCGAGATCTAGTTCTAGTCGGAGTGATCCGGATGGAGGATGGCTGGGCTGGTGGTGACCGGGTTGACAGATGGTGGCAGGTGGCGACTTTGCAGGTGGTGGTGCGACAGGTTCTACGGGATGGAGGGATCTCGGCGCAAAGAAGGGGCTGCCGGTGGTGGGACAACACGGGACTTGCAAGCGGGCTGGCGGTGGTGGACTTGCAGCAGGCCGGGCCTGTGGTTTTGGGACCAATTTGGACCCAATCTGGGCAACAGTGTTTTGGTGTTTTTTTCTTTCATTGTTTTAGATGCACCTCTAGCTGGGACCTTATTAGAGGTTTTAACAATAACACCAAGATGCGAAGAACATACTGTGACACTGCCTTTAAGGAGAGACTGCTGGACAAAATTGAAATTGGATTTTGCTTTTCTGCTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.72

Weight (kDa)

9.52

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	250, 265
Acc36I	ACCTGC	2 cut(s)	250, 265
AccII	CGCG	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	6 cut(s)	37, 81, 136, 139, 363, 371
AclWI	GGATC	2 cut(s)	202, 317
AfiI	CCNNNNNNNGG	4 cut(s)	217, 340, 429, 483
AgsI	TTSAA	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	483
AluI	AGCT	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	2 cut(s)	202, 317
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	3 cut(s)	133, 390, 395
ApeKI	GCWGC	2 cut(s)	330, 385
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	5 cut(s)	133, 395, 410, 420, 487
AsuC2I	CCSGG	2 cut(s)	242, 394
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	3 cut(s)	410, 420, 487
AxyI	CCTNAGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	317, 397
BccI	CCATC	4 cut(s)	208, 215, 246, 296
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	2 cut(s)	242, 394
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	3 cut(s)	191, 197, 480
BfuAI	ACCTGC	2 cut(s)	250, 265
BglI	GCCNNNNNGGC	1 cut(s)	50
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	5 cut(s)	38, 136, 139, 331, 386
BlsI	GCNGC	5 cut(s)	39, 137, 140, 332, 387
Bme1390I	CCNGG	3 cut(s)	131, 242, 394
Bme18I	GGWCC	3 cut(s)	410, 420, 487
BmgT120I	GGNCC	5 cut(s)	133, 395, 410, 420, 487
BmiI	GGNNCC	3 cut(s)	411, 422, 488
BmrFI	CCNGG	3 cut(s)	131, 242, 394
BmsI	GCATC	2 cut(s)	461, 510
BpuMI	CCSGG	2 cut(s)	242, 394
BsaJI	CCNNGG	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 340, 429, 483
Bse118I	RCCGGY	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	219, 226, 307
BseLI	CCNNNNNNNGG	4 cut(s)	217, 340, 429, 483
BseRI	GAGGAG	2 cut(s)	173, 176
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	317, 397
BseYI	CCCAGC	2 cut(s)	225, 483
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	135, 392, 397
BsiSI	CCGG	5 cut(s)	34, 211, 241, 334, 393
BslFI	GGGAC	5 cut(s)	4, 356, 366, 423, 500
BslI	CCNNNNNNNGG	4 cut(s)	217, 340, 429, 483
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	5 cut(s)	4, 356, 366, 423, 500
BsnI	GGCC	3 cut(s)	135, 392, 397
Bsp1286I	GDGCHC	2 cut(s)	46, 55
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	165, 187, 207, 309
BspACI	CCGC	6 cut(s)	37, 81, 136, 139, 363, 371
BspANI	GGCC	3 cut(s)	135, 392, 397
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	411, 422, 488
BspMI	ACCTGC	2 cut(s)	250, 265
BspPI	GGATC	2 cut(s)	202, 317
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	4 cut(s)	165, 187, 207, 309
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	178, 438, 536
BstC8I	GCNNGC	5 cut(s)	42, 361, 365, 369, 390
BstDEI	CTNAG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	236
BstF5I	GGATG	3 cut(s)	219, 226, 307
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	4 cut(s)	168, 190, 210, 312
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	4 cut(s)	165, 187, 207, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 394, 480
BstNI	CCWGG	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	236
BstSCI	CCNGG	3 cut(s)	129, 240, 392
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	317, 397
BstX2I	RGATCY	2 cut(s)	187, 309
BstYI	RGATCY	2 cut(s)	187, 309
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	135, 392, 397
BtsCI	GGATG	3 cut(s)	219, 226, 307
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	3 cut(s)	174, 443, 540
BveI	ACCTGC	2 cut(s)	250, 265
Cac8I	GCNNGC	5 cut(s)	42, 361, 365, 369, 390
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	5 cut(s)	133, 395, 410, 420, 487
CviAII	CATG	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	167, 189, 209, 311
DpnII	GATC	4 cut(s)	165, 187, 207, 309
EciI	GGCGGA	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	3 cut(s)	410, 420, 487
Eco81I	CCTNAGG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 532
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	5 cut(s)	4, 356, 366, 423, 500
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	5 cut(s)	38, 136, 139, 331, 386
FokI	GGATG	3 cut(s)	226, 233, 314
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	5 cut(s)	38, 136, 139, 331, 386
FspBI	CTAG	3 cut(s)	191, 197, 480
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	5 cut(s)	38, 136, 139, 331, 386
GsaI	CCCAGC	2 cut(s)	229, 487
HaeIII	GGCC	3 cut(s)	135, 392, 397
HapII	CCGG	5 cut(s)	34, 211, 241, 334, 393
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HpaII	CCGG	5 cut(s)	34, 211, 241, 334, 393
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	247, 379
Hpy188I	TCNGA	2 cut(s)	64, 203
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	247, 379
HpyAV	CCTTC	3 cut(s)	34, 145, 318
HpyCH4III	ACNGT	3 cut(s)	178, 438, 536
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	117, 274, 359, 385, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 394, 480
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	165, 187, 207, 309
Lsp1109I	GCAGC	2 cut(s)	317, 397
LweI	GCATC	2 cut(s)	461, 510
MaeI	CTAG	3 cut(s)	191, 197, 480
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	172, 236, 536
MalI	GATC	4 cut(s)	167, 189, 209, 311
MboI	GATC	4 cut(s)	165, 187, 207, 309
MboII	GAAGA	2 cut(s)	19, 537
MflI	RGATCY	2 cut(s)	187, 309
MhlI	GDGCHC	2 cut(s)	46, 55
MluCI	AATT	4 cut(s)	143, 414, 570, 576
MmeI	TCCRAC	2 cut(s)	42, 181
MnlI	CCTC	9 cut(s)	89, 119, 141, 151, 154, 211, 299, 487, 491
MroI	TCCGGA	1 cut(s)	210
MseI	TTAA	2 cut(s)	504, 549
MslI	CAYNNNNRTG	1 cut(s)	518
MspI	CCGG	5 cut(s)	34, 211, 241, 334, 393
MspR9I	CCNGG	3 cut(s)	131, 242, 394
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	50, 394, 480
NciI	CCSGG	2 cut(s)	242, 394
NdeII	GATC	4 cut(s)	165, 187, 207, 309
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	3 cut(s)	411, 422, 488
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	3 cut(s)	172, 236, 536
PaqCI	CACCTGC	2 cut(s)	250, 265
PkrI	GCNGC	5 cut(s)	39, 137, 140, 332, 387
PpuMI	RGGWCCY	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	236
PspFI	CCCAGC	2 cut(s)	225, 483
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	411, 422, 488
PspPI	GGNCC	5 cut(s)	133, 395, 410, 420, 487
PspPPI	RGGWCCY	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	187, 309
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	2 cut(s)	504, 549
SatI	GCNGC	5 cut(s)	38, 136, 139, 331, 386
Sau3AI	GATC	4 cut(s)	165, 187, 207, 309
Sau96I	GGNCC	5 cut(s)	133, 395, 410, 420, 487
ScrFI	CCNGG	3 cut(s)	131, 242, 394
SduI	GDGCHC	2 cut(s)	46, 55
SfaNI	GCATC	2 cut(s)	461, 510
SinI	GGWCC	3 cut(s)	410, 420, 487
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	4 cut(s)	143, 414, 570, 576
SsiI	CCGC	6 cut(s)	37, 81, 136, 139, 363, 371
SspMI	CTAG	3 cut(s)	191, 197, 480
StyD4I	CCNGG	3 cut(s)	129, 240, 392
TaaI	ACNGT	3 cut(s)	178, 438, 536
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	126
TasI	AATT	4 cut(s)	143, 414, 570, 576
TauI	GCSGC	3 cut(s)	40, 138, 141
Tru1I	TTAA	2 cut(s)	504, 549
Tru9I	TTAA	2 cut(s)	504, 549
TscAI	CASTG	3 cut(s)	181, 443, 547
TseFI	GTSAC	3 cut(s)	172, 236, 536
TseI	GCWGC	2 cut(s)	330, 385
Tsp45I	GTSAC	3 cut(s)	172, 236, 536
TspDTI	ATGAA	1 cut(s)	449
TspRI	CASTG	3 cut(s)	181, 443, 547
VpaK11BI	GGWCC	3 cut(s)	410, 420, 487
XspI	CTAG	3 cut(s)	191, 197, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.