Rh5BG313900

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000833
Physical Location & Seq
Reverse (-)
41592655 .. 41593020
366 bp
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UTR
Exon/CDS
Intron
Rh5BG313900.1

Sequence Viewer

Length: 366 bp
ATGAACAGGATCATAGACACCGAGGAGGATGTCAAGTTGCTTAGAGAGAAGCGTATCATCGTGAACCATTTGAAGAGTGATGAAGAAGTGGCAAATCTGTTCAATGGCATGAGCAAGTCCATTAGATTAACCAAAGTGCCCTCCTTGGATAAGGTAATCGCAGATGCCAACGGGTATTACAATGGTAGATGGAAAGTGAAGATGAGGAAGTTTTTGAACACTTTTGTGTATGGTTCCAAGCCGTTACTGGCTTTCCTCGCTGCCATTTTGCTCCTGCTCTTGATGACATTGCAAGCAGTCTGCTCAGTCTATAGGTGCAGTAGCATATTTCTTAGGCATATCAACACCACAGTCACCATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

121

Amino Acids

13.86

Weight (kDa)

9.78

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 94 8.9e-25 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 17
AgsI TTSAA 3 cut(s) 73, 103, 217
AleI CACNNNNGTG 1 cut(s) 224
AlwI GGATC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 310
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 21, 144
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 21, 144
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 287
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 21, 144
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 4 cut(s) 41, 304, 332, 363
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 294
CviAII CATG 1 cut(s) 109
CviJI RGCY 2 cut(s) 241, 251
CviKI_1 RGCY 2 cut(s) 241, 251
DdeI CTNAG 4 cut(s) 41, 304, 332, 363
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 14, 110, 231, 312, 326, 339
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 112
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 61, 280
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 292, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 4 cut(s) 41, 304, 332, 363
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 2 cut(s) 233, 287
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 243, 352
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 85, 95, 211
MhlI GDGCHC 1 cut(s) 141
MnlI CCTC 5 cut(s) 16, 19, 151, 198, 266
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 224
PkrI GCNGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 141
SetI ASST 2 cut(s) 156, 317
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 352
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 17, 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.