Rw0G021180

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00974
OG0000833
Physical Location & Seq
Forward (+)
9398 .. 11061
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021180.1

Sequence Viewer

Length: 1503 bp
ATGTCTTCTCTCCAACCAATATTCTCTTACAAATCCAGTTCCAACTTCAGTGAGGATCAATGGGTGATTCAAATCCGAAAAACTGTAGAGGAAGAGCTCGACGATGATAGTGAAATCCCTGTCTCCATTTTCAACGTCCCCAAATCCCTCTTGGCTAGTGACTCGGAATCGTACACCCCTCAACAGGTTGCGCACCATGTTGACCAATTGACGAGGTCCGAGCTGAGGATTCGTGCTTGTTACCACAAGTACTTGGAGGTTAGTGGTGAGACTTTGGGGTGGATGATGGCCATTGATGCTTCGTTTTTCCTCAAAATCCTCCAAGTCTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGATCATGCAGGAAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCTCGATTTGTTTTGAAAAAAGTGTTGAAGTTTAAGCTCCCAGCATTGGAATGTGCCAAAGATAAGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCCCCATTCAAGATGAATGACGAAGACATGCCAAATATGGGAGTGAATATCCAATTCTCGATAGCCGAGCCATCGGAAATCACAAAAGCCATGGGATATGAGGCCACACAACAACAGAAGGGAAAATCATCAGTTAATTCAAATTTCGTCAAACAATTTCTGAAGCAGGTACGGAAGCTGCTATCGAAGTTGAATAAAGGCCCAATACCTCTTCTGAGAAAAATTCCAATATCTGGACCTGTAAAAGTGATATCCGACCTGCCTTGGACTATCCTCTTTGACCTTCTTTCCACCCAAGACAAAGAAGCAGTCAAACCCGAAGATGACAGTTCGAGCAATGGCATTAGCAAACCGCCGAAGATAGAGGAGATCACCATCCCATCAGTCTCCGATCTCTCAAAATCTTGTGTCAAGTTCTTGGCCGGCGGAATTAGAATTTCAGACATCTCTTTCAATGCTGAAACTGGCTCATTTACCCTCCCGATTACTAGCTTAGATGGGAACACAGGGGTGATCCTGAGAAACTTGGTGGCCTATGAAGCATCAAGTGTATCGGGGCCATTGGTTTTCACTCGCTACACCGAGTTAATGAACGGGATCATAGACACCGAGGAGGATGTCAAGTTGCTTAGAGAGAAGCGTATCATCGTGAACCATTTGAAGAGTGATGAAGAAGTGGCAAATCTGTTCAATGGCATGAGCAAGTCCATTAGATTGACCAAAGTGCCCTCCTTGGATAAGGTAATCGCAGATGCCAACGGGTATTACAATGGTAGATGGAAAGTAAAGATGAGGAAGTTTTTGAACACTTTTGTGTATGGTTCCAGGCCGTTACTGGCTTTCCTCGCTGCCATTTTGCTCCTGCTCTTGATGACATTGCAAGCAGTCTGCTCAGTCTATAGGTGCAGTAGCATATTTCTTAGGCATATCAACACCACAGTCACCATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

500

Amino Acids

56.12

Weight (kDa)

8.77

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 64 - 473 2.1e-72 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 192
Acc36I ACCTGC 2 cut(s) 706, 816
AccB7I CCANNNNNTGG 1 cut(s) 782
AciI CCGC 2 cut(s) 902, 975
AclWI GGATC 3 cut(s) 63, 1057, 1154
AcoI YGGCCR 2 cut(s) 288, 969
AcsI RAATTY 3 cut(s) 691, 771, 984
AcuI CTGAAG 2 cut(s) 31, 731
AfaI GTAC 3 cut(s) 173, 251, 720
AfiI CCNNNNNNNGG 5 cut(s) 184, 225, 493, 587, 782
AjnI CCWGG 1 cut(s) 1373
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AleI CACNNNNGTG 2 cut(s) 1058, 1361
AluBI AGCT 7 cut(s) 97, 223, 484, 514, 547, 727, 1041
AluI AGCT 7 cut(s) 97, 223, 484, 514, 547, 727, 1041
Alw21I GWGCWC 2 cut(s) 99, 549
Alw26I GTCTC 3 cut(s) 127, 263, 940
AlwI GGATC 3 cut(s) 63, 1057, 1154
AoxI GGCC 8 cut(s) 288, 343, 651, 748, 969, 1080, 1106, 1376
ApeKI GCWGC 2 cut(s) 727, 1397
ApoI RAATTY 3 cut(s) 691, 771, 984
ArsI GACNNNNNNTTYG 2 cut(s) 843, 875
AspLEI GCGC 3 cut(s) 193, 370, 403
AspS9I GGNCC 6 cut(s) 216, 334, 344, 749, 785, 1106
AsuHPI GGTGA 6 cut(s) 76, 278, 439, 913, 1072, 1483
AvaII GGWCC 3 cut(s) 216, 334, 785
AxyI CCTNAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 1278
BalI TGGCCA 1 cut(s) 290
BanII GRGCYC 2 cut(s) 99, 549
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 2 cut(s) 99, 549
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 714, 1384
BccI CCATC 7 cut(s) 280, 358, 628, 932, 937, 1040, 1320
BceAI ACGGC 1 cut(s) 1363
BciT130I CCWGG 1 cut(s) 1375
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 127, 263, 940
BfaI CTAG 2 cut(s) 156, 1038
BfmI CTRYAG 2 cut(s) 84, 1447
BfuAI ACCTGC 2 cut(s) 706, 816
BisI GCNGC 2 cut(s) 728, 1398
BlsI GCNGC 2 cut(s) 729, 1399
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 1375
Bme18I GGWCC 3 cut(s) 216, 334, 785
BmgT120I GGNCC 6 cut(s) 216, 334, 344, 749, 785, 1106
BmiI GGNNCC 2 cut(s) 1107, 1372
BmrFI CCNGG 1 cut(s) 1375
BmsI GCATC 5 cut(s) 286, 412, 420, 1100, 1291
BpiI GAAGAC 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 455
BsaBI GATNNNNATC 2 cut(s) 71, 923
BsaJI CCNNGG 4 cut(s) 639, 812, 1158, 1281
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 225, 493, 587, 782
Bse118I RCCGGY 1 cut(s) 971
Bse1I ACTGG 3 cut(s) 36, 1018, 1389
Bse21I CCTNAGG 1 cut(s) 416
Bse3DI GCAATG 2 cut(s) 892, 1424
Bse8I GATNNNNATC 2 cut(s) 71, 923
BseBI CCWGG 1 cut(s) 1375
BseDI CCNNGG 4 cut(s) 639, 812, 1158, 1281
BseGI GGATG 4 cut(s) 288, 369, 924, 1171
BseJI GATNNNNATC 2 cut(s) 71, 923
BseLI CCNNNNNNNGG 5 cut(s) 184, 225, 493, 587, 782
BseMI GCAATG 2 cut(s) 892, 1424
BseMII CTCAG 4 cut(s) 215, 755, 1058, 1455
BseNI ACTGG 3 cut(s) 36, 1018, 1389
BseRI GAGGAG 2 cut(s) 929, 1175
BseSI GKGCMC 1 cut(s) 1278
BseXI GCAGC 2 cut(s) 714, 1384
BseYI CCCAGC 1 cut(s) 487
BsgI GTGCAG 1 cut(s) 1474
BshFI GGCC 8 cut(s) 290, 345, 653, 750, 971, 1082, 1108, 1378
BsiHKAI GWGCWC 2 cut(s) 99, 549
BsiSI CCGG 1 cut(s) 972
BslFI GGGAC 2 cut(s) 122, 434
BslI CCNNNNNNNGG 5 cut(s) 184, 225, 493, 587, 782
BsmAI GTCTC 3 cut(s) 127, 263, 940
BsmFI GGGAC 2 cut(s) 122, 434
BsnI GGCC 8 cut(s) 290, 345, 653, 750, 971, 1082, 1108, 1378
Bsp1286I GDGCHC 3 cut(s) 99, 549, 1278
Bsp143I GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 2 cut(s) 902, 975
BspANI GGCC 8 cut(s) 290, 345, 653, 750, 971, 1082, 1108, 1378
BspCNI CTCAG 4 cut(s) 216, 756, 1059, 1454
BspLI GGNNCC 2 cut(s) 1107, 1372
BspMI ACCTGC 2 cut(s) 706, 816
BspPI GGATC 3 cut(s) 63, 1057, 1154
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 2 cut(s) 892, 1424
BsrFI RCCGGY 1 cut(s) 971
BsrI ACTGG 3 cut(s) 36, 1018, 1389
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 4 cut(s) 639, 812, 1158, 1281
BssMI GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
BssT1I CCWWGG 3 cut(s) 639, 812, 1281
Bst2UI CCWGG 1 cut(s) 1375
Bst4CI ACNGT 3 cut(s) 85, 878, 1489
Bst6I CTCTTC 3 cut(s) 87, 765, 1205
BstC8I GCNNGC 2 cut(s) 973, 1431
BstDEI CTNAG 9 cut(s) 224, 416, 764, 1042, 1067, 1178, 1441, 1469, 1500
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 4 cut(s) 288, 369, 924, 1171
BstHHI GCGC 3 cut(s) 193, 370, 403
BstKTI GATC 6 cut(s) 58, 382, 921, 943, 1065, 1149
BstMAI GTCTC 3 cut(s) 127, 263, 940
BstMBI GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
BstMWI GCNNNNNNNGC 4 cut(s) 296, 407, 1088, 1394
BstNI CCWGG 1 cut(s) 1375
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 1373
BstSFI CTRYAG 2 cut(s) 84, 1447
BstSLI GKGCMC 1 cut(s) 1278
BstV1I GCAGC 2 cut(s) 714, 1384
BstV2I GAAGAC 1 cut(s) 579
BstXI CCANNNNNNTGG 1 cut(s) 529
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 8 cut(s) 290, 345, 653, 750, 971, 1082, 1108, 1378
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 4 cut(s) 288, 369, 924, 1171
BtsIMutI CAGTG 1 cut(s) 55
BveI ACCTGC 2 cut(s) 706, 816
Cac8I GCNNGC 2 cut(s) 973, 1431
CfoI GCGC 3 cut(s) 193, 370, 403
Cfr10I RCCGGY 1 cut(s) 971
Cfr13I GGNCC 6 cut(s) 216, 334, 344, 749, 785, 1106
Csp6I GTAC 3 cut(s) 172, 250, 719
CviAII CATG 7 cut(s) 197, 383, 407, 523, 577, 640, 1246
CviQI GTAC 3 cut(s) 172, 250, 719
DdeI CTNAG 9 cut(s) 224, 416, 764, 1042, 1067, 1178, 1441, 1469, 1500
DpnI GATC 6 cut(s) 57, 381, 920, 942, 1064, 1148
DpnII GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
EaeI YGGCCR 2 cut(s) 288, 969
Eam1104I CTCTTC 3 cut(s) 87, 765, 1205
EarI CTCTTC 3 cut(s) 87, 765, 1205
EciI GGCGGA 1 cut(s) 990
Ecl136II GAGCTC 2 cut(s) 97, 547
Eco130I CCWWGG 3 cut(s) 639, 812, 1281
Eco24I GRGCYC 2 cut(s) 99, 549
Eco32I GATATC 1 cut(s) 801
Eco47I GGWCC 3 cut(s) 216, 334, 785
Eco53kI GAGCTC 2 cut(s) 97, 547
Eco57I CTGAAG 2 cut(s) 31, 731
Eco81I CCTNAGG 1 cut(s) 416
EcoICRI GAGCTC 2 cut(s) 97, 547
EcoRII CCWGG 1 cut(s) 1373
EcoRV GATATC 1 cut(s) 801
EcoT14I CCWWGG 3 cut(s) 639, 812, 1281
EcoT38I GRGCYC 2 cut(s) 99, 549
ErhI CCWWGG 3 cut(s) 639, 812, 1281
FaeI CATG 7 cut(s) 200, 386, 410, 526, 580, 643, 1249
FalI AAGNNNNNCTT 4 cut(s) 340, 372, 498, 530
FaqI GGGAC 2 cut(s) 122, 434
FatI CATG 7 cut(s) 196, 382, 406, 522, 576, 639, 1245
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 728, 1398
FokI GGATG 4 cut(s) 295, 376, 911, 1178
FriOI GRGCYC 2 cut(s) 99, 549
Fsp4HI GCNGC 2 cut(s) 728, 1398
FspBI CTAG 2 cut(s) 156, 1038
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 3 cut(s) 192, 369, 402
GluI GCNGC 2 cut(s) 728, 1398
GsaI CCCAGC 1 cut(s) 491
HaeIII GGCC 8 cut(s) 290, 345, 653, 750, 971, 1082, 1108, 1378
HapII CCGG 1 cut(s) 972
HhaI GCGC 3 cut(s) 193, 370, 403
Hin1II CATG 7 cut(s) 200, 386, 410, 526, 580, 643, 1249
Hin6I GCGC 3 cut(s) 191, 368, 401
HinP1I GCGC 3 cut(s) 191, 368, 401
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 4 cut(s) 67, 161, 167, 229
HpaII CCGG 1 cut(s) 972
HphI GGTGA 6 cut(s) 76, 278, 439, 913, 1072, 1483
Hpy166II GTNNAC 3 cut(s) 174, 202, 1201
Hpy188I TCNGA 9 cut(s) 77, 166, 220, 625, 711, 765, 805, 940, 991
Hpy188III TCNNGA 7 cut(s) 559, 607, 783, 1030, 1066, 1198, 1417
Hpy8I GTNNAC 3 cut(s) 174, 202, 1201
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 335, 384, 661, 842
HpyCH4III ACNGT 3 cut(s) 85, 878, 1489
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 386, 410, 540, 1429, 1455
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 407, 1088, 1394
HpyF3I CTNAG 9 cut(s) 224, 416, 764, 1042, 1067, 1178, 1441, 1469, 1500
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 7 cut(s) 200, 386, 410, 526, 580, 643, 1249
HspAI GCGC 3 cut(s) 191, 368, 401
KroI GCCGGC 1 cut(s) 971
KroNI GCCGGC 1 cut(s) 973
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 489, 1413
Lsp1109I GCAGC 2 cut(s) 714, 1384
LweI GCATC 5 cut(s) 286, 412, 420, 1100, 1291
MaeI CTAG 2 cut(s) 156, 1038
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 4 cut(s) 158, 239, 1380, 1489
MalI GATC 6 cut(s) 57, 381, 920, 942, 1064, 1148
MboI GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
MboII GAAGA 8 cut(s) 104, 348, 584, 752, 881, 919, 1222, 1232
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 3 cut(s) 99, 549, 1278
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 8 cut(s) 206, 602, 685, 691, 704, 771, 978, 984
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 3 cut(s) 37, 66, 828
Mox20I TGGCCA 1 cut(s) 290
MroNI GCCGGC 1 cut(s) 971
MscI TGGCCA 1 cut(s) 290
MseI TTAA 3 cut(s) 480, 684, 1136
MslI CAYNNNNRTG 4 cut(s) 496, 527, 1058, 1361
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 1 cut(s) 972
MspR9I CCNGG 1 cut(s) 1375
MunI CAATTG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 1375
MwoI GCNNNNNNNGC 4 cut(s) 296, 407, 1088, 1394
NaeI GCCGGC 1 cut(s) 973
NcoI CCATGG 1 cut(s) 639
NdeII GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
NgoMIV GCCGGC 1 cut(s) 971
NlaIII CATG 7 cut(s) 200, 386, 410, 526, 580, 643, 1249
NlaIV GGNNCC 2 cut(s) 1107, 1372
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 158, 1489
NsbI TGCGCA 1 cut(s) 192
NspI RCATGY 1 cut(s) 580
OliI CACNNNNGTG 2 cut(s) 1058, 1361
PciSI GCTCTTC 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 973
PfeI GAWTC 3 cut(s) 67, 167, 229
PflFI GACNNNGTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 782
PkrI GCNGC 2 cut(s) 729, 1399
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp124BI GAGCTC 2 cut(s) 99, 549
Psp6I CCWGG 1 cut(s) 1373
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 1373
PspN4I GGNNCC 2 cut(s) 1107, 1372
PspPI GGNCC 6 cut(s) 216, 334, 344, 749, 785, 1106
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 3 cut(s) 173, 251, 720
RsaNI GTAC 3 cut(s) 172, 250, 719
RseI CAYNNNNRTG 4 cut(s) 496, 527, 1058, 1361
SacI GAGCTC 2 cut(s) 99, 549
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 3 cut(s) 480, 684, 1136
SatI GCNGC 2 cut(s) 728, 1398
Sau3AI GATC 6 cut(s) 55, 379, 918, 940, 1062, 1146
Sau96I GGNCC 6 cut(s) 216, 334, 344, 749, 785, 1106
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 1375
SduI GDGCHC 3 cut(s) 99, 549, 1278
SfaNI GCATC 5 cut(s) 286, 412, 420, 1100, 1291
SfcI CTRYAG 2 cut(s) 84, 1447
SinI GGWCC 3 cut(s) 216, 334, 785
SmiMI CAYNNNNRTG 4 cut(s) 496, 527, 1058, 1361
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 8 cut(s) 206, 602, 685, 691, 704, 771, 978, 984
SsiI CCGC 2 cut(s) 902, 975
SspI AATATT 1 cut(s) 21
SspMI CTAG 2 cut(s) 156, 1038
SstI GAGCTC 2 cut(s) 99, 549
StyD4I CCNGG 1 cut(s) 1373
StyI CCWWGG 3 cut(s) 639, 812, 1281
TaaI ACNGT 3 cut(s) 85, 878, 1489
TaiI ACGT 1 cut(s) 138
TaqI TCGA 5 cut(s) 99, 451, 608, 734, 881
TasI AATT 8 cut(s) 206, 602, 685, 691, 704, 771, 978, 984
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 3 cut(s) 67, 167, 229
Tru1I TTAA 3 cut(s) 480, 684, 1136
Tru9I TTAA 3 cut(s) 480, 684, 1136
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 158, 1489
TseI GCWGC 2 cut(s) 727, 1397
Tsp45I GTSAC 2 cut(s) 158, 1489
TspDTI ATGAA 4 cut(s) 578, 1101, 1154, 1233
TspGWI ACGGA 1 cut(s) 736
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 782
VpaK11BI GGWCC 3 cut(s) 216, 334, 785
XapI RAATTY 3 cut(s) 691, 771, 984
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 1381
XspI CTAG 2 cut(s) 156, 1038
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.