Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Forward (+)

68639631 .. 68640529

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0503500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGTTATGGGTTTAATAAGCTTCTTGGAGGACTATCTAGTGTGAAGACCCTAGCTACCAATTCTGATTCCCTTGAGGTGATTCAGACTCATGCAACAGAACTGCTTAGACAGATGCCCTTGTTGAATTACCTAACCACTTTGAAATTGGAAGCAGAGGAAGTAGTTCCCTGTAGCAAAGCACTATTGAGGATGCTTGAAAACTGTCCTTGCCTTCAAACTCTGATATTCTTTCAGGAGATTAACCTGTCCTCAGATGATGCTAACGACGATGGGGTGTTGGAGCCACTGCCTCCATGTTTCCTGACTAGTCTTAAACAGATTAAAGTTCATGCATTCTATGGAGACAAGAAAAATCTTTGTGCAATAAAGATTTTGCTAAAGAATGCCATGGTCTTGGAGAAGATGATCTTAACTTGCATGCACAATTTTGTTGGAGGATCAGAGAAGAAAAAGGATGTTAACAAACAGCTATCAGATCTCCCAAAAGGGTCAGAAAGCTGTGAAGTTGTTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

173

Amino Acids

19.18

Weight (kDa)

5.93

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	97 - 138	6.9e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	127, 145, 200, 218
AhlI	ACTAGT	1 cut(s)	308
AluBI	AGCT	4 cut(s)	22, 56, 472, 501
AluI	AGCT	4 cut(s)	22, 56, 472, 501
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	448
Asp700I	GAANNNNTTC	2 cut(s)	165, 510
AsuHPI	GGTGA	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	53
BccI	CCATC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	3 cut(s)	39, 53, 309
BfmI	CTRYAG	1 cut(s)	172
BglII	AGATCT	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	3 cut(s)	105, 183, 250
BpiI	GAAGAC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	198, 463
BseMII	CTCAG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	339
BsmI	GAATGC	2 cut(s)	335, 391
Bsp143I	GATC	3 cut(s)	408, 440, 478
Bsp19I	CCATGG	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	408, 440, 478
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	107, 253
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	198, 463
BstKTI	GATC	3 cut(s)	411, 443, 481
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	408, 440, 478
BstNSI	RCATGY	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	478
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	198, 463
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	422
CviAII	CATG	5 cut(s)	92, 297, 332, 391, 421
CviJI	RGCY	5 cut(s)	22, 56, 286, 472, 501
CviKI_1	RGCY	5 cut(s)	22, 56, 286, 472, 501
DdeI	CTNAG	2 cut(s)	107, 253
DpnI	GATC	3 cut(s)	410, 442, 480
DpnII	GATC	3 cut(s)	408, 440, 478
Eco130I	CCWWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	5 cut(s)	95, 300, 335, 394, 424
FaiI	YATR	7 cut(s)	9, 93, 298, 333, 342, 392, 422
FalI	AAGNNNNNCTT	3 cut(s)	395, 427, 498
FatI	CATG	5 cut(s)	91, 296, 331, 390, 420
FokI	GGATG	2 cut(s)	205, 470
FspBI	CTAG	3 cut(s)	39, 53, 309
Hin1II	CATG	5 cut(s)	95, 300, 335, 394, 424
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	68, 82, 88
HpaI	GTTAAC	1 cut(s)	463
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	7 cut(s)	67, 87, 225, 256, 445, 478, 496
Hpy188III	TCNNGA	2 cut(s)	236, 304
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	95, 335, 365, 420, 424
HpyF3I	CTNAG	2 cut(s)	107, 253
Hsp92II	CATG	5 cut(s)	95, 300, 335, 394, 424
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	408, 440, 478
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	184, 221, 260, 317
LweI	GCATC	3 cut(s)	105, 183, 250
MaeI	CTAG	3 cut(s)	39, 53, 309
MalI	GATC	3 cut(s)	410, 442, 480
MboI	GATC	3 cut(s)	408, 440, 478
MboII	GAAGA	3 cut(s)	58, 415, 460
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	4 cut(s)	61, 127, 146, 427
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	261, 415
MnlI	CCTC	7 cut(s)	23, 70, 151, 183, 262, 303, 431
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	2 cut(s)	165, 510
MseI	TTAA	6 cut(s)	15, 243, 315, 324, 413, 462
Mva1269I	GAATGC	2 cut(s)	335, 391
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	408, 440, 478
NlaIII	CATG	5 cut(s)	95, 300, 335, 394, 424
NlaIV	GGNNCC	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	424
PaeI	GCATGC	1 cut(s)	424
PctI	GAATGC	2 cut(s)	335, 391
PdmI	GAANNNNTTC	2 cut(s)	165, 510
PfeI	GAWTC	2 cut(s)	68, 82
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	478
SaqAI	TTAA	6 cut(s)	15, 243, 315, 324, 413, 462
Sau3AI	GATC	3 cut(s)	408, 440, 478
SchI	GAGTC	1 cut(s)	82
SetI	ASST	7 cut(s)	24, 58, 81, 135, 249, 474, 503
SfaNI	GCATC	3 cut(s)	105, 183, 250
SfcI	CTRYAG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	308
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	4 cut(s)	61, 127, 146, 427
SspMI	CTAG	3 cut(s)	39, 53, 309
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	4 cut(s)	61, 127, 146, 427
TfiI	GAWTC	2 cut(s)	68, 82
Tru1I	TTAA	6 cut(s)	15, 243, 315, 324, 413, 462
Tru9I	TTAA	6 cut(s)	15, 243, 315, 324, 413, 462
TscAI	CASTG	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	294
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmnI	GAANNNNTTC	2 cut(s)	165, 510
XspI	CTAG	3 cut(s)	39, 53, 309
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.