Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Forward (+)

424326 .. 425033

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000108.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ctgccttggactatcctttccaaccatgctagacccgcaatttggaaacaacctctcgagttactttcctcccaagacaaagaagcaatcaaacccggagatgataaatcaagcaatagatcgtcgttgatagaggagatcaccatcccatcagtctccaaactctcaaaatcaggtgtcaagttcttgcccgcaagtagtatttcaaccatctctttcgatgctaaaacttgctcattttacctcccgagtacaagcttagatgggaacatagaggtgatcctgagaaacttggtggcctacgaggcatcaactgcatcggggccattggtttttactcactacaccgagttgatgaatggaatcatagacaccgatgaggacgccaagttgcttagagagaagggtatcatcttgaaccgtttgaagagtgatgaagaagtggcaaagctgttcaatggcatgagcaggtccattagattgaccaaagtgcccttcttggataaggcaatcaaagatgccaacaagtattaccatggtagatggcaggtgaagatgagggagtcttcgaaaacttatgtgttaggttcttggcaatttctggcttcgctcgctaccatttttctcctgcaattgatgacattggaagcattttgctcagtctatagctgcagtcgcatgtttcatatcaacaccactaataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

235

Amino Acids

26.39

Weight (kDa)

9.02

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	2 cut(s)	459, 538
AciI	CCGC	2 cut(s)	36, 192
AclWI	GGATC	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	207, 418, 427, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	3 cut(s)	258, 451, 669
AluI	AGCT	3 cut(s)	258, 451, 669
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	274
Ama87I	CYCGRG	2 cut(s)	56, 247
AoxI	GGCC	2 cut(s)	297, 323
ApeKI	GCWGC	1 cut(s)	669
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AspS9I	GGNCC	2 cut(s)	323, 471
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	3 cut(s)	133, 289, 562
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	2 cut(s)	56, 247
AvaII	GGWCC	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	5 cut(s)	152, 157, 218, 257, 537
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	2 cut(s)	664, 670
BfuAI	ACCTGC	2 cut(s)	459, 538
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	671
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	471
BmeT110I	CYCGRG	2 cut(s)	56, 247
BmgT120I	GGNCC	2 cut(s)	323, 471
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	4 cut(s)	211, 317, 326, 508
BpiI	GAAGAC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	5, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	5, 535
BseGI	GGATG	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	275, 672
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	656
BshFI	GGCC	2 cut(s)	299, 325
BsiHKCI	CYCGRG	2 cut(s)	56, 247
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	299, 325
BsoBI	CYCGRG	2 cut(s)	56, 247
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	119, 138, 279
Bsp19I	CCATGG	1 cut(s)	535
BspACI	CCGC	2 cut(s)	36, 192
BspANI	GGCC	2 cut(s)	299, 325
BspCNI	CTCAG	2 cut(s)	276, 671
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	674
BspMI	ACCTGC	2 cut(s)	459, 538
BspPI	GGATC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	5, 535
BssMI	GATC	3 cut(s)	119, 138, 279
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	5, 535
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	192, 612
BstDEI	CTNAG	4 cut(s)	259, 284, 395, 658
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	122, 141, 282
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	119, 138, 279
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 305, 314, 611, 675
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	2 cut(s)	664, 670
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	656
BstV2I	GAAGAC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	299, 325
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	1 cut(s)	144
BveI	ACCTGC	2 cut(s)	459, 538
Cac8I	GCNNGC	2 cut(s)	192, 612
Cfr13I	GGNCC	2 cut(s)	323, 471
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	4 cut(s)	26, 463, 536, 679
CviJI	RGCY	6 cut(s)	258, 299, 325, 451, 605, 669
CviKI_1	RGCY	6 cut(s)	258, 299, 325, 451, 605, 669
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	4 cut(s)	259, 284, 395, 658
DpnI	GATC	3 cut(s)	121, 140, 281
DpnII	GATC	3 cut(s)	119, 138, 279
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	5, 535
Eco47I	GGWCC	1 cut(s)	471
Eco88I	CYCGRG	2 cut(s)	56, 247
EcoT14I	CCWWGG	2 cut(s)	5, 535
ErhI	CCWWGG	2 cut(s)	5, 535
FaeI	CATG	4 cut(s)	29, 466, 539, 682
FaiI	YATR	9 cut(s)	27, 272, 368, 464, 537, 579, 666, 680, 687
FatI	CATG	4 cut(s)	25, 462, 535, 678
FauI	CCCGC	2 cut(s)	43, 199
Fnu4HI	GCNGC	1 cut(s)	670
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	670
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	1 cut(s)	670
HaeIII	GGCC	2 cut(s)	299, 325
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	29, 466, 539, 682
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	363, 563
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	3 cut(s)	133, 289, 562
Hpy188III	TCNNGA	4 cut(s)	56, 247, 283, 415
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	397, 505
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	3 cut(s)	317, 631, 672
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 305, 314, 611, 675
HpyF3I	CTNAG	4 cut(s)	259, 284, 395, 658
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	4 cut(s)	29, 466, 539, 682
Kzo9I	GATC	3 cut(s)	119, 138, 279
LpnPI	CCDG	7 cut(s)	109, 159, 296, 454, 533, 587, 641
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	4 cut(s)	211, 317, 326, 508
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	3 cut(s)	121, 140, 281
MboI	GATC	3 cut(s)	119, 138, 279
MboII	GAAGA	4 cut(s)	439, 449, 558, 565
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	3 cut(s)	39, 596, 632
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	8 cut(s)	63, 79, 127, 254, 268, 298, 373, 552
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	632
MwoI	GCNNNNNNNGC	5 cut(s)	35, 305, 314, 611, 675
NciI	CCSGG	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	3 cut(s)	119, 138, 279
NlaIII	CATG	4 cut(s)	29, 466, 539, 682
NlaIV	GGNNCC	1 cut(s)	324
NspI	RCATGY	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	56
PaqCI	CACCTGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	671
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	323, 471
PstI	CTGCAG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	1 cut(s)	670
Sau3AI	GATC	3 cut(s)	119, 138, 279
Sau96I	GGNCC	2 cut(s)	323, 471
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	4 cut(s)	211, 317, 326, 508
SfcI	CTRYAG	2 cut(s)	664, 670
Sfr274I	CTCGAG	1 cut(s)	56
SfuI	TTCGAA	1 cut(s)	569
SinI	GGWCC	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	39, 596, 632
SsiI	CCGC	2 cut(s)	36, 192
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	2 cut(s)	5, 535
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	3 cut(s)	57, 219, 569
TasI	AATT	3 cut(s)	39, 596, 632
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	669
TspDTI	ATGAA	3 cut(s)	371, 450, 674
VpaK11BI	GGWCC	1 cut(s)	471
XceI	RCATGY	1 cut(s)	682
XhoI	CTCGAG	1 cut(s)	56
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.