RchiOBHm_Chr6g0251751

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000833
Physical Location & Seq
Forward (+)
7024355 .. 7025277
923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22568

Sequence Viewer

Length: 873 bp
ATGATCACCCCCAAATTAGAAACTAGACCGTCCGAAATTGTAGAAACCGAGGATGGTCCGGCCACACCACACGAGGGAAAGTCTTCAGATAACTCGAATTTTGTCAAACAATTTCTGGAGAAGGTAGGGAAGCTGCTATCGAAGTTGAACAAGGGCCCGATACGTCTTCTGGAAAAAAAAAATCTAATTTCTCGACCTATAAAAGTGTTACGCAAACTGCCTTGGACTATCCTTTCCAACCATGCTGGACCCGCAATTTGGAAACAACCTCTCAAGTTACTTTCCTCCCAAGACAAAGAAGCAGTCAAACCCGGAGATGATAAATCAAGCAATAGACCGCCGTTGATAGAGGAGATCACCATCCCATCAATCTCCAAACTCTCAAAATCAGGTACTTGCTCATTTTACCTCCCGAGTACAAGCTTAGATGGGAATATAGAGGTGATCCTGAGAAACTTGGTGGCCGACGAGGCATCAACTGCATCAGGGCCATTGGTTTTTACTCGCTACACCGAGTTGATGAACGGAATCATAGACACCGAGGAGGACGCTAAGTTGCTTAGAGAGAAGGGTATCATCTTGAACCATTTGAAGAGTGATGAAGAAGTGGCAAAGCTGTTCAGTGGCATGAGCAGGTCCATTAGATTGACCAAAGTGCCCTTCTTGGATAAGGCAATCAAAGATGCAAACAAGTACTACCATGGTAGATGGAAGGTGAAGATGAGGAAGTCTTTGAAAACTTATGTGTTAGGTTCTTGGCAATTTCTGGCTTCGCTCGCTACCATTTTTCTCCTGCTCTTGATGACATTGGAAGCATTTTGCTCAGTCTATAGCTGCAGTCGCATGTTTCATATCAAGACCACTAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

290

Amino Acids

32.59

Weight (kDa)

9.59

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 134 - 267 1.5e-36 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 624
AciI CCGC 2 cut(s) 252, 338
AclWI GGATC 1 cut(s) 439
AcoI YGGCCR 2 cut(s) 60, 462
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 3 cut(s) 394, 418, 695
AfiI CCNNNNNNNGG 2 cut(s) 74, 258
AgsI TTSAA 4 cut(s) 148, 583, 592, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 4 cut(s) 133, 423, 616, 834
AluI AGCT 4 cut(s) 133, 423, 616, 834
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 4 cut(s) 60, 154, 462, 488
ApaI GGGCCC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 133, 834
ApoI RAATTY 1 cut(s) 97
ArsI GACNNNNNNTTYG 4 cut(s) 240, 272, 288, 320
Asp700I GAANNNNTTC 1 cut(s) 82
AspS9I GGNCC 6 cut(s) 56, 154, 155, 248, 488, 636
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 3 cut(s) 349, 454, 727
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 3 cut(s) 56, 248, 636
BaeGI GKGCMC 2 cut(s) 158, 660
BanII GRGCYC 1 cut(s) 158
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 2 cut(s) 75, 158
BbvI GCAGC 2 cut(s) 120, 821
BccI CCATC 5 cut(s) 47, 368, 373, 422, 702
BceAI ACGGC 1 cut(s) 325
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 312
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 829, 835
BfuAI ACCTGC 1 cut(s) 624
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 2 cut(s) 134, 835
BlsI GCNGC 2 cut(s) 135, 836
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 3 cut(s) 56, 248, 636
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 6 cut(s) 56, 154, 155, 248, 488, 636
BmiI GGNNCC 2 cut(s) 156, 250
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 3 cut(s) 482, 491, 673
BpiI GAAGAC 2 cut(s) 75, 158
BpmI CTGGAG 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 4 cut(s) 48, 221, 540, 700
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 258
Bse8I GATNNNNATC 1 cut(s) 359
BseDI CCNNGG 4 cut(s) 48, 221, 540, 700
BseGI GGATG 2 cut(s) 58, 360
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 74, 258
BseMII CTCAG 2 cut(s) 440, 837
BseRI GAGGAG 2 cut(s) 365, 557
BseSI GKGCMC 2 cut(s) 158, 660
BseXI GCAGC 2 cut(s) 120, 821
BshFI GGCC 4 cut(s) 62, 156, 464, 490
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 59, 312
BslI CCNNNNNNNGG 2 cut(s) 74, 258
BsnI GGCC 4 cut(s) 62, 156, 464, 490
BsoBI CYCGRG 1 cut(s) 412
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 158, 660
Bsp143I GATC 3 cut(s) 3, 354, 444
Bsp19I CCATGG 1 cut(s) 700
BspACI CCGC 2 cut(s) 252, 338
BspANI GGCC 4 cut(s) 62, 156, 464, 490
BspCNI CTCAG 2 cut(s) 441, 836
BspLI GGNNCC 2 cut(s) 156, 250
BspMAI CTGCAG 1 cut(s) 839
BspMI ACCTGC 1 cut(s) 624
BspPI GGATC 1 cut(s) 439
BssECI CCNNGG 4 cut(s) 48, 221, 540, 700
BssMI GATC 3 cut(s) 3, 354, 444
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 2 cut(s) 221, 700
Bst2BI CACGAG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 5 cut(s) 424, 449, 552, 560, 823
BstDSI CCRYGG 1 cut(s) 700
BstF5I GGATG 2 cut(s) 58, 360
BstKTI GATC 3 cut(s) 6, 357, 447
BstMBI GATC 3 cut(s) 3, 354, 444
BstMWI GCNNNNNNNGC 5 cut(s) 251, 470, 479, 776, 840
BstNSI RCATGY 1 cut(s) 847
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 829, 835
BstSLI GKGCMC 2 cut(s) 158, 660
BstV1I GCAGC 2 cut(s) 120, 821
BstV2I GAAGAC 2 cut(s) 75, 158
BsuRI GGCC 4 cut(s) 62, 156, 464, 490
BtgI CCRYGG 1 cut(s) 700
BtsCI GGATG 2 cut(s) 58, 360
BtsIMutI CAGTG 1 cut(s) 628
BveI ACCTGC 1 cut(s) 624
Cac8I GCNNGC 1 cut(s) 777
Cfr13I GGNCC 6 cut(s) 56, 154, 155, 248, 488, 636
CseI GACGC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 393, 417, 694
CviAII CATG 4 cut(s) 242, 628, 701, 844
CviJI RGCY 9 cut(s) 62, 133, 156, 423, 464, 490, 616, 770, 834
CviKI_1 RGCY 9 cut(s) 62, 133, 156, 423, 464, 490, 616, 770, 834
CviQI GTAC 3 cut(s) 393, 417, 694
DdeI CTNAG 5 cut(s) 424, 449, 552, 560, 823
DpnI GATC 3 cut(s) 5, 356, 446
DpnII GATC 3 cut(s) 3, 354, 444
EaeI YGGCCR 2 cut(s) 60, 462
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco130I CCWWGG 2 cut(s) 221, 700
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 3 cut(s) 56, 248, 636
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 221, 700
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 2 cut(s) 221, 700
FaeI CATG 4 cut(s) 245, 631, 704, 847
FatI CATG 4 cut(s) 241, 627, 700, 843
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 134, 835
FokI GGATG 2 cut(s) 65, 347
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 134, 835
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 134, 835
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 4 cut(s) 62, 156, 464, 490
HapII CCGG 2 cut(s) 59, 312
HgaI GACGC 1 cut(s) 557
Hin1II CATG 4 cut(s) 245, 631, 704, 847
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 1 cut(s) 528
HpaII CCGG 2 cut(s) 59, 312
HphI GGTGA 3 cut(s) 349, 454, 727
Hpy188I TCNGA 2 cut(s) 34, 88
Hpy188III TCNNGA 8 cut(s) 116, 170, 192, 412, 448, 580, 799, 856
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 4 cut(s) 115, 562, 670, 706
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 482, 686, 837
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 470, 479, 776, 840
HpyF3I CTNAG 5 cut(s) 424, 449, 552, 560, 823
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 4 cut(s) 245, 631, 704, 847
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 354, 444
Lsp1109I GCAGC 2 cut(s) 120, 821
LweI GCATC 3 cut(s) 482, 491, 673
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 207, 276
MalI GATC 3 cut(s) 5, 356, 446
MboI GATC 3 cut(s) 3, 354, 444
MboII GAAGA 5 cut(s) 75, 158, 604, 614, 730
MhlI GDGCHC 2 cut(s) 158, 660
MluCI AATT 7 cut(s) 14, 36, 97, 110, 186, 255, 761
MmeI TCCRAC 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 82
MspI CCGG 2 cut(s) 59, 312
MspR9I CCNGG 1 cut(s) 312
MwoI GCNNNNNNNGC 5 cut(s) 251, 470, 479, 776, 840
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 1 cut(s) 700
NdeII GATC 3 cut(s) 3, 354, 444
NlaIII CATG 4 cut(s) 245, 631, 704, 847
NlaIV GGNNCC 2 cut(s) 156, 250
NspI RCATGY 1 cut(s) 847
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 528
PkrI GCNGC 2 cut(s) 135, 836
PspN4I GGNNCC 2 cut(s) 156, 250
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 6 cut(s) 56, 154, 155, 248, 488, 636
PstI CTGCAG 1 cut(s) 839
RsaI GTAC 3 cut(s) 394, 418, 695
RsaNI GTAC 3 cut(s) 393, 417, 694
SatI GCNGC 2 cut(s) 134, 835
Sau3AI GATC 3 cut(s) 3, 354, 444
Sau96I GGNCC 6 cut(s) 56, 154, 155, 248, 488, 636
ScaI AGTACT 1 cut(s) 695
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 2 cut(s) 158, 660
SfaNI GCATC 3 cut(s) 482, 491, 673
SfcI CTRYAG 2 cut(s) 829, 835
SinI GGWCC 3 cut(s) 56, 248, 636
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 7 cut(s) 14, 36, 97, 110, 186, 255, 761
SsiI CCGC 2 cut(s) 252, 338
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 221, 700
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 95, 140, 193
TasI AATT 7 cut(s) 14, 36, 97, 110, 186, 255, 761
TatI WGTACW 2 cut(s) 416, 693
TfiI GAWTC 1 cut(s) 528
TscAI CASTG 1 cut(s) 628
TseI GCWGC 2 cut(s) 133, 834
TspDTI ATGAA 3 cut(s) 536, 615, 839
TspGWI ACGGA 1 cut(s) 540
TspRI CASTG 1 cut(s) 628
VpaK11BI GGWCC 3 cut(s) 56, 248, 636
XapI RAATTY 1 cut(s) 97
XceI RCATGY 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.