Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

10027355 .. 10029126

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCCACCGAGAACTTGTTTGTTAGCAATGTGTTTCAAAGAAGAGATGTATCCCTTGACTTCCCAAGCAACAAGCGTGTGATCAGAATAGTGAATACCAAGATGACTGGAACCTGCTGGGATAGTTCTTCTACAGACGTTACATATCATGATATATTAACTCTAGCGGACCATGAAGTTATTGTCTCAGTCCCTGACTTCCTGCTTGTATCCAAAAGGCAAGAGCATACAACGAAGATGGCTGAAATTCTTACCAAATTGAGGGTCCCAGAATTTGAGCAACCACCTATCATTGATAAAATATTTATGGCGGTTGAACTGGCTGACAACCCCCACTGGCCTATTGCTTGCCTCATAATGGATATCACCTTATTTCATCAAAAGATCAGCATGACCTATCAGTTAGATTGTTTTGAGAAAGTGAGAATTGATAGTTTGGAAGGTACTGTTAGACACAAACAGTGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAGGGTGTAGAGGAAGGAATTGATCGTGGTCAGCTGATTCGCTTGCCCTGTTCACATATTTTTCATCAAGATTGCATTTTCCAATGGCTGACGATGAGTCAATTGTGTCCCTTGTGCCGATACTCGGTGCCAGTTGTGGAACAGGCGAGGCCGGTTGTGGAACAGGTAATGCCGGTTGTGGAACAGACAACTGAGCCATCAAAACCATCATGGCGGCAGCTGCATTGGCCTATGCTGGTCACAGCGACTGCAGGTGGTATATTAACTGCTATGTTGGTATGTAAATTATTGAAGCAAAGCCGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

267

Amino Acids

30.68

Weight (kDa)

6.06

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	154 - 205	3.2e-11	Ring finger domain
zf-rbx1	PF12678	154 - 205	6.7e-09	RING-H2 zinc finger domain
zf-RING_UBOX	PF13445	155 - 202	6e-06	RING-type zinc-finger
zf-C3HC4_2	PF13923	180 - 204	2.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	2 cut(s)	122, 737
AccB1I	GGYRCC	1 cut(s)	622
AciI	CCGC	3 cut(s)	167, 311, 709
AcsI	RAATTY	2 cut(s)	246, 272
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	261, 358, 619
AgsI	TTSAA	3 cut(s)	38, 317, 787
AhdI	GACNNNNNGTC	1 cut(s)	591
AluBI	AGCT	2 cut(s)	529, 715
AluI	AGCT	2 cut(s)	529, 715
Alw26I	GTCTC	1 cut(s)	190
AlwNI	CAGNNNCTG	2 cut(s)	194, 743
AoxI	GGCC	3 cut(s)	338, 644, 722
ApeKI	GCWGC	2 cut(s)	712, 715
ApoI	RAATTY	2 cut(s)	246, 272
ArsI	GACNNNNNNTTYG	4 cut(s)	249, 281, 450, 482
AspS9I	GGNCC	2 cut(s)	169, 265
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	169, 265
BanI	GGYRCC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	702, 724
BccI	CCATC	3 cut(s)	232, 700, 709
BciVI	GTATCC	2 cut(s)	61, 220
BclI	TGATCA	2 cut(s)	81, 487
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	132, 744
BfuAI	ACCTGC	2 cut(s)	122, 737
BfuI	GTATCC	2 cut(s)	61, 220
BisI	GCNGC	3 cut(s)	710, 713, 716
BlsI	GCNGC	3 cut(s)	711, 714, 717
Bme18I	GGWCC	2 cut(s)	169, 265
BmeRI	GACNNNNNGTC	1 cut(s)	591
BmgT120I	GGNCC	2 cut(s)	169, 265
BmiI	GGNNCC	4 cut(s)	112, 266, 267, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 358, 619
Bse118I	RCCGGY	2 cut(s)	646, 667
Bse1I	ACTGG	4 cut(s)	112, 324, 341, 626
Bse3DI	GCAATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	3 cut(s)	261, 358, 619
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	201, 678
BseNI	ACTGG	4 cut(s)	112, 324, 341, 626
BseXI	GCAGC	2 cut(s)	702, 724
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	3 cut(s)	340, 646, 724
BshNI	GGYRCC	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	647, 668
BslFI	GGGAC	3 cut(s)	176, 251, 588
BslI	CCNNNNNNNGG	3 cut(s)	261, 358, 619
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	3 cut(s)	176, 251, 588
BsnI	GGCC	3 cut(s)	340, 646, 724
Bsp143I	GATC	4 cut(s)	81, 384, 487, 517
BspACI	CCGC	3 cut(s)	167, 311, 709
BspANI	GGCC	3 cut(s)	340, 646, 724
BspCNI	CTCAG	2 cut(s)	200, 679
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	4 cut(s)	112, 266, 267, 624
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	2 cut(s)	122, 737
BspT107I	GGYRCC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	2 cut(s)	646, 667
BsrI	ACTGG	4 cut(s)	112, 324, 341, 626
BssAI	RCCGGY	2 cut(s)	646, 667
BssMI	GATC	4 cut(s)	81, 384, 487, 517
Bst4CI	ACNGT	2 cut(s)	448, 462
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	349, 539
BstDEI	CTNAG	2 cut(s)	187, 687
BstKTI	GATC	4 cut(s)	84, 387, 490, 520
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	81, 384, 487, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	715, 721
BstSFI	CTRYAG	2 cut(s)	132, 744
BstV1I	GCAGC	2 cut(s)	702, 724
BsuI	GTATCC	2 cut(s)	61, 220
BsuRI	GGCC	3 cut(s)	340, 646, 724
BtsIMutI	CAGTG	2 cut(s)	334, 467
BveI	ACCTGC	2 cut(s)	122, 737
Cac8I	GCNNGC	2 cut(s)	349, 539
CaiI	CAGNNNCTG	2 cut(s)	194, 743
CciI	TCATGA	1 cut(s)	148
Cfr10I	RCCGGY	2 cut(s)	646, 667
Cfr13I	GGNCC	2 cut(s)	169, 265
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	4 cut(s)	149, 173, 391, 705
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	2 cut(s)	187, 687
DpnI	GATC	4 cut(s)	83, 386, 489, 519
DpnII	GATC	4 cut(s)	81, 384, 487, 517
DriI	GACNNNNNGTC	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	169, 265
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	364
FaeI	CATG	4 cut(s)	152, 176, 394, 708
FaqI	GGGAC	3 cut(s)	176, 251, 588
FatI	CATG	4 cut(s)	148, 172, 390, 704
FbaI	TGATCA	2 cut(s)	81, 487
Fnu4HI	GCNGC	3 cut(s)	710, 713, 716
Fsp4HI	GCNGC	3 cut(s)	710, 713, 716
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	3 cut(s)	710, 713, 716
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	340, 646, 724
HapII	CCGG	2 cut(s)	647, 668
Hin1II	CATG	4 cut(s)	152, 176, 394, 708
HinfI	GANTC	2 cut(s)	532, 592
HpaII	CCGG	2 cut(s)	647, 668
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	6, 548
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	149, 563
Hpy8I	GTNNAC	2 cut(s)	6, 548
HpyAV	CCTTC	2 cut(s)	434, 503
HpyCH4III	ACNGT	2 cut(s)	448, 462
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	570, 718, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	715, 721
HpyF3I	CTNAG	2 cut(s)	187, 687
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	152, 176, 394, 708
KflI	GGGWCCC	1 cut(s)	265
Ksp22I	TGATCA	2 cut(s)	81, 487
Kzo9I	GATC	4 cut(s)	81, 384, 487, 517
Lsp1109I	GCAGC	2 cut(s)	702, 724
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	139, 733
MalI	GATC	4 cut(s)	83, 386, 489, 519
MboI	GATC	4 cut(s)	81, 384, 487, 517
MboII	GAAGA	3 cut(s)	54, 120, 247
MfeI	CAATTG	1 cut(s)	596
MluCI	AATT	7 cut(s)	246, 257, 272, 426, 513, 596, 779
MlyI	GAGTC	1 cut(s)	601
MnlI	CCTC	5 cut(s)	255, 362, 490, 499, 636
MseI	TTAA	2 cut(s)	158, 758
MspA1I	CMGCKG	2 cut(s)	529, 715
MspI	CCGG	2 cut(s)	647, 668
MunI	CAATTG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	715, 721
NdeII	GATC	4 cut(s)	81, 384, 487, 517
NlaIII	CATG	4 cut(s)	152, 176, 394, 708
NlaIV	GGNNCC	4 cut(s)	112, 266, 267, 624
NmuCI	GTSAC	1 cut(s)	733
PagI	TCATGA	1 cut(s)	148
PaqCI	CACCTGC	1 cut(s)	737
PfeI	GAWTC	1 cut(s)	532
PkrI	GCNGC	3 cut(s)	711, 714, 717
PleI	GAGTC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	600
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	4 cut(s)	112, 266, 267, 624
PspPI	GGNCC	2 cut(s)	169, 265
PspPPI	RGGWCCY	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	2 cut(s)	194, 743
PvuII	CAGCTG	2 cut(s)	529, 715
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	158, 758
SatI	GCNGC	3 cut(s)	710, 713, 716
Sau3AI	GATC	4 cut(s)	81, 384, 487, 517
Sau96I	GGNCC	2 cut(s)	169, 265
SchI	GAGTC	1 cut(s)	601
SfcI	CTRYAG	2 cut(s)	132, 744
SinI	GGWCC	2 cut(s)	169, 265
Sse9I	AATT	7 cut(s)	246, 257, 272, 426, 513, 596, 779
SsiI	CCGC	3 cut(s)	167, 311, 709
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	448, 462
TaiI	ACGT	1 cut(s)	141
TasI	AATT	7 cut(s)	246, 257, 272, 426, 513, 596, 779
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	2 cut(s)	158, 758
Tru9I	TTAA	2 cut(s)	158, 758
TscAI	CASTG	2 cut(s)	341, 467
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	2 cut(s)	712, 715
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	3 cut(s)	189, 365, 548
TspRI	CASTG	2 cut(s)	341, 467
VpaK11BI	GGWCC	2 cut(s)	169, 265
XapI	RAATTY	2 cut(s)	246, 272
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.