Argonaute
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G21030 AT5G21030 AT5G21150 |
| fragaria_vesca | FvH4_4g13080 FvH4_7g04840 FvH4_7g04840 |
| malus_domestica | MD07G1052200.v1.1 MD07G1052400.v1.1 |
| prunus_persica | Prupe.2G056600_v2.0.a1 Prupe.2G056700_v2.0.a1 |
| pyrus_communis | pycom07g04070 pycom07g04080 |
| rosa_chinensis | RchiOBHm_Chr1g0322921 RchiOBHm_Chr1g0330301 RchiOBHm_Chr4g0412801 RchiOBHm_Chr7g0206231 |
| rosa_laevigata | RLG00000008257 RLG00000029812 |
| rosa_multiflora | Rmu_sc0002224.1_g000009 Rmu_sc0011701.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00319970 Rroxscaffold_5G00347500 Rroxscaffold_5G00357050 Rroxscaffold_7G00201260 Rroxscaffold_7G00201270 |
| rosa_rugosa | Rorug01G0088700 Rorug01G0088800 Rorug02G0651800 Rorug04G0117000 Rorug06G0108000 Rorug07G0164100 |
| rosa_samantha | Rh1AG106600 Rh1BG084900 Rh1BG159000 Rh1CG102600 Rh1DG110500 Rh1DG112200 Rh1DG189800 Rh3CG350500 Rh4AG175600 Rh4BG175500 Rh4CG186800 Rh4DG172500 Rh7DG234200 |
| rosa_wichuraiana | Rw0G011280 Rw1G008420 Rw1G008560 Rw4G014740 Rw7G030700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 404 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1191 |
| AccII | CGCG | 1 cut(s) | 852 |
| AciI | CCGC | 2 cut(s) | 543, 1041 |
| AclWI | GGATC | 1 cut(s) | 220 |
| AcsI | RAATTY | 1 cut(s) | 604 |
| AfaI | GTAC | 4 cut(s) | 177, 297, 716, 1228 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 373, 559, 1191 |
| AgsI | TTSAA | 4 cut(s) | 278, 522, 604, 769 |
| AhlI | ACTAGT | 1 cut(s) | 982 |
| AjnI | CCWGG | 3 cut(s) | 589, 1008, 1184 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 883, 915 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 36, 68 |
| AluBI | AGCT | 6 cut(s) | 88, 126, 145, 525, 919, 1217 |
| AluI | AGCT | 6 cut(s) | 88, 126, 145, 525, 919, 1217 |
| Alw26I | GTCTC | 3 cut(s) | 437, 686, 999 |
| AlwI | GGATC | 1 cut(s) | 220 |
| Ama87I | CYCGRG | 1 cut(s) | 466 |
| AoxI | GGCC | 3 cut(s) | 531, 544, 1193 |
| ApeKI | GCWGC | 4 cut(s) | 142, 311, 416, 1217 |
| ApoI | RAATTY | 1 cut(s) | 604 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 748, 780 |
| AspS9I | GGNCC | 2 cut(s) | 531, 593 |
| AvaI | CYCGRG | 1 cut(s) | 466 |
| AvaII | GGWCC | 1 cut(s) | 593 |
| BbvI | GCAGC | 4 cut(s) | 154, 298, 428, 1204 |
| BccI | CCATC | 4 cut(s) | 107, 782, 788, 1114 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 328, 362 |
| BciT130I | CCWGG | 3 cut(s) | 591, 1010, 1186 |
| BciVI | GTATCC | 1 cut(s) | 1102 |
| BcoDI | GTCTC | 3 cut(s) | 437, 686, 999 |
| BcuI | ACTAGT | 1 cut(s) | 982 |
| BfaI | CTAG | 3 cut(s) | 233, 914, 983 |
| BfmI | CTRYAG | 1 cut(s) | 505 |
| BfuI | GTATCC | 1 cut(s) | 1102 |
| BisI | GCNGC | 5 cut(s) | 143, 312, 417, 544, 1218 |
| BlsI | GCNGC | 5 cut(s) | 144, 313, 418, 545, 1219 |
| BmcAI | AGTACT | 1 cut(s) | 177 |
| Bme1390I | CCNGG | 3 cut(s) | 591, 1010, 1186 |
| Bme18I | GGWCC | 1 cut(s) | 593 |
| BmeT110I | CYCGRG | 1 cut(s) | 466 |
| BmgT120I | GGNCC | 2 cut(s) | 531, 593 |
| BmiI | GGNNCC | 2 cut(s) | 19, 54 |
| BmrFI | CCNGG | 3 cut(s) | 591, 1010, 1186 |
| BmsI | GCATC | 4 cut(s) | 660, 841, 882, 1078 |
| BsaI | GGTCTC | 1 cut(s) | 686 |
| BsaJI | CCNNGG | 4 cut(s) | 467, 951, 1008, 1086 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 480, 510, 1004, 1034 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 373, 559, 1191 |
| Bse1I | ACTGG | 2 cut(s) | 183, 730 |
| BseBI | CCWGG | 3 cut(s) | 591, 1010, 1186 |
| BseDI | CCNNGG | 4 cut(s) | 467, 951, 1008, 1086 |
| BseGI | GGATG | 6 cut(s) | 187, 568, 675, 1069, 1125, 1129 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 373, 559, 1191 |
| BseNI | ACTGG | 2 cut(s) | 183, 730 |
| BseRI | GAGGAG | 1 cut(s) | 504 |
| BseXI | GCAGC | 4 cut(s) | 154, 298, 428, 1204 |
| BseYI | CCCAGC | 1 cut(s) | 828 |
| Bsh1236I | CGCG | 1 cut(s) | 852 |
| BshFI | GGCC | 3 cut(s) | 533, 546, 1195 |
| BsiHKCI | CYCGRG | 1 cut(s) | 466 |
| BslFI | GGGAC | 1 cut(s) | 1084 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 373, 559, 1191 |
| BsmAI | GTCTC | 3 cut(s) | 437, 686, 999 |
| BsmFI | GGGAC | 1 cut(s) | 1084 |
| BsmI | GAATGC | 2 cut(s) | 346, 418 |
| BsnI | GGCC | 3 cut(s) | 533, 546, 1195 |
| Bso31I | GGTCTC | 1 cut(s) | 686 |
| BsoBI | CYCGRG | 1 cut(s) | 466 |
| Bsp143I | GATC | 3 cut(s) | 212, 804, 1033 |
| BspACI | CCGC | 2 cut(s) | 543, 1041 |
| BspANI | GGCC | 3 cut(s) | 533, 546, 1195 |
| BspFNI | CGCG | 1 cut(s) | 852 |
| BspLI | GGNNCC | 2 cut(s) | 19, 54 |
| BspPI | GGATC | 1 cut(s) | 220 |
| BspQI | GCTCTTC | 1 cut(s) | 116 |
| BspTNI | GGTCTC | 1 cut(s) | 686 |
| BsrI | ACTGG | 2 cut(s) | 183, 730 |
| BssECI | CCNNGG | 4 cut(s) | 467, 951, 1008, 1086 |
| BssMI | GATC | 3 cut(s) | 212, 804, 1033 |
| BssT1I | CCWWGG | 2 cut(s) | 951, 1086 |
| Bst2UI | CCWGG | 3 cut(s) | 591, 1010, 1186 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 172, 811 |
| Bst6I | CTCTTC | 4 cut(s) | 116, 231, 251, 795 |
| BstC8I | GCNNGC | 1 cut(s) | 330 |
| BstDEI | CTNAG | 1 cut(s) | 663 |
| BstF5I | GGATG | 6 cut(s) | 187, 568, 675, 1069, 1125, 1129 |
| BstFNI | CGCG | 1 cut(s) | 852 |
| BstKTI | GATC | 3 cut(s) | 215, 807, 1036 |
| BstMAI | GTCTC | 3 cut(s) | 437, 686, 999 |
| BstMBI | GATC | 3 cut(s) | 212, 804, 1033 |
| BstNI | CCWGG | 3 cut(s) | 591, 1010, 1186 |
| BstNSI | RCATGY | 1 cut(s) | 844 |
| BstSCI | CCNGG | 3 cut(s) | 589, 1008, 1184 |
| BstSFI | CTRYAG | 1 cut(s) | 505 |
| BstUI | CGCG | 1 cut(s) | 852 |
| BstV1I | GCAGC | 4 cut(s) | 154, 298, 428, 1204 |
| BstX2I | RGATCY | 1 cut(s) | 212 |
| BstYI | RGATCY | 1 cut(s) | 212 |
| BsuI | GTATCC | 1 cut(s) | 1102 |
| BsuRI | GGCC | 3 cut(s) | 533, 546, 1195 |
| BtsCI | GGATG | 6 cut(s) | 187, 568, 675, 1069, 1125, 1129 |
| BtsI | GCAGTG | 1 cut(s) | 1176 |
| BtsIMutI | CAGTG | 3 cut(s) | 723, 807, 1176 |
| Cac8I | GCNNGC | 1 cut(s) | 330 |
| Cfr13I | GGNCC | 2 cut(s) | 531, 593 |
| CsiI | ACCWGGT | 1 cut(s) | 589 |
| Csp6I | GTAC | 4 cut(s) | 176, 296, 715, 1227 |
| CviAII | CATG | 3 cut(s) | 613, 841, 1133 |
| CviQI | GTAC | 4 cut(s) | 176, 296, 715, 1227 |
| DdeI | CTNAG | 1 cut(s) | 663 |
| DpnI | GATC | 3 cut(s) | 214, 806, 1035 |
| DpnII | GATC | 3 cut(s) | 212, 804, 1033 |
| Eam1104I | CTCTTC | 4 cut(s) | 116, 231, 251, 795 |
| EarI | CTCTTC | 4 cut(s) | 116, 231, 251, 795 |
| EciI | GGCGGA | 1 cut(s) | 1056 |
| Eco130I | CCWWGG | 2 cut(s) | 951, 1086 |
| Eco31I | GGTCTC | 1 cut(s) | 686 |
| Eco47I | GGWCC | 1 cut(s) | 593 |
| Eco88I | CYCGRG | 1 cut(s) | 466 |
| EcoRII | CCWGG | 3 cut(s) | 589, 1008, 1184 |
| EcoT14I | CCWWGG | 2 cut(s) | 951, 1086 |
| ErhI | CCWWGG | 2 cut(s) | 951, 1086 |
| FaeI | CATG | 3 cut(s) | 616, 844, 1136 |
| FaqI | GGGAC | 1 cut(s) | 1084 |
| FatI | CATG | 3 cut(s) | 612, 840, 1132 |
| Fnu4HI | GCNGC | 5 cut(s) | 143, 312, 417, 544, 1218 |
| FokI | GGATG | 6 cut(s) | 194, 575, 682, 1056, 1132, 1136 |
| Fsp4HI | GCNGC | 5 cut(s) | 143, 312, 417, 544, 1218 |
| FspBI | CTAG | 3 cut(s) | 233, 914, 983 |
| GluI | GCNGC | 5 cut(s) | 143, 312, 417, 544, 1218 |
| GsaI | CCCAGC | 1 cut(s) | 832 |
| HaeIII | GGCC | 3 cut(s) | 533, 546, 1195 |
| Hin1II | CATG | 3 cut(s) | 616, 844, 1136 |
| HincII | GTYRAC | 3 cut(s) | 28, 304, 1023 |
| HindII | GTYRAC | 3 cut(s) | 28, 304, 1023 |
| HindIII | AAGCTT | 1 cut(s) | 523 |
| HinfI | GANTC | 5 cut(s) | 241, 261, 359, 854, 1044 |
| Hpy166II | GTNNAC | 5 cut(s) | 28, 67, 304, 570, 1023 |
| Hpy188I | TCNGA | 3 cut(s) | 364, 1110, 1153 |
| Hpy188III | TCNNGA | 4 cut(s) | 56, 337, 356, 392 |
| Hpy8I | GTNNAC | 5 cut(s) | 28, 67, 304, 570, 1023 |
| HpyAV | CCTTC | 4 cut(s) | 8, 909, 1086, 1170 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 172, 811 |
| HpyCH4IV | ACGT | 2 cut(s) | 46, 758 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 328, 416, 747, 844, 873, 940, 1169, 1220 |
| HpyF3I | CTNAG | 1 cut(s) | 663 |
| HpySE526I | ACGT | 2 cut(s) | 46, 758 |
| Hsp92II | CATG | 3 cut(s) | 616, 844, 1136 |
| Kzo9I | GATC | 3 cut(s) | 212, 804, 1033 |
| LguI | GCTCTTC | 1 cut(s) | 116 |
| LmnI | GCTCC | 4 cut(s) | 85, 150, 1012, 1066 |
| Lsp1109I | GCAGC | 4 cut(s) | 154, 298, 428, 1204 |
| LweI | GCATC | 4 cut(s) | 660, 841, 882, 1078 |
| MabI | ACCWGGT | 1 cut(s) | 589 |
| MaeI | CTAG | 3 cut(s) | 233, 914, 983 |
| MaeII | ACGT | 2 cut(s) | 46, 758 |
| MaeIII | GTNAC | 4 cut(s) | 224, 846, 1128, 1208 |
| MalI | GATC | 3 cut(s) | 214, 806, 1035 |
| MboI | GATC | 3 cut(s) | 212, 804, 1033 |
| MboII | GAAGA | 5 cut(s) | 133, 248, 268, 445, 812 |
| MflI | RGATCY | 1 cut(s) | 212 |
| MluCI | AATT | 4 cut(s) | 482, 604, 925, 1221 |
| MlyI | GAGTC | 3 cut(s) | 250, 270, 353 |
| MmeI | TCCRAC | 1 cut(s) | 862 |
| MnlI | CCTC | 9 cut(s) | 159, 344, 462, 482, 485, 620, 660, 773, 1083 |
| MseI | TTAA | 4 cut(s) | 372, 657, 731, 1231 |
| MslI | CAYNNNNRTG | 1 cut(s) | 575 |
| MspR9I | CCNGG | 3 cut(s) | 591, 1010, 1186 |
| Mva1269I | GAATGC | 2 cut(s) | 346, 418 |
| MvaI | CCWGG | 3 cut(s) | 591, 1010, 1186 |
| MvnI | CGCG | 1 cut(s) | 852 |
| NdeII | GATC | 3 cut(s) | 212, 804, 1033 |
| NlaIII | CATG | 3 cut(s) | 616, 844, 1136 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 54 |
| NmeAIII | GCCGAG | 1 cut(s) | 976 |
| NmuCI | GTSAC | 1 cut(s) | 1128 |
| NspI | RCATGY | 1 cut(s) | 844 |
| PciSI | GCTCTTC | 1 cut(s) | 116 |
| PctI | GAATGC | 2 cut(s) | 346, 418 |
| PfeI | GAWTC | 2 cut(s) | 854, 1044 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1191 |
| PfoI | TCCNGGA | 1 cut(s) | 1184 |
| PkrI | GCNGC | 5 cut(s) | 144, 313, 418, 545, 1219 |
| PleI | GAGTC | 3 cut(s) | 249, 269, 353 |
| PpsI | GAGTC | 3 cut(s) | 249, 269, 353 |
| PsiI | TTATAA | 1 cut(s) | 404 |
| Psp6I | CCWGG | 3 cut(s) | 589, 1008, 1184 |
| PspFI | CCCAGC | 1 cut(s) | 828 |
| PspGI | CCWGG | 3 cut(s) | 589, 1008, 1184 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 54 |
| PspPI | GGNCC | 2 cut(s) | 531, 593 |
| PsuI | RGATCY | 1 cut(s) | 212 |
| RsaI | GTAC | 4 cut(s) | 177, 297, 716, 1228 |
| RsaNI | GTAC | 4 cut(s) | 176, 296, 715, 1227 |
| RseI | CAYNNNNRTG | 1 cut(s) | 575 |
| SapI | GCTCTTC | 1 cut(s) | 116 |
| SaqAI | TTAA | 4 cut(s) | 372, 657, 731, 1231 |
| SatI | GCNGC | 5 cut(s) | 143, 312, 417, 544, 1218 |
| Sau3AI | GATC | 3 cut(s) | 212, 804, 1033 |
| Sau96I | GGNCC | 2 cut(s) | 531, 593 |
| ScaI | AGTACT | 1 cut(s) | 177 |
| SchI | GAGTC | 3 cut(s) | 250, 270, 353 |
| ScrFI | CCNGG | 3 cut(s) | 591, 1010, 1186 |
| SexAI | ACCWGGT | 1 cut(s) | 589 |
| SfaNI | GCATC | 4 cut(s) | 660, 841, 882, 1078 |
| SfcI | CTRYAG | 1 cut(s) | 505 |
| SinI | GGWCC | 1 cut(s) | 593 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 575 |
| SpeI | ACTAGT | 1 cut(s) | 982 |
| Sse9I | AATT | 4 cut(s) | 482, 604, 925, 1221 |
| SsiI | CCGC | 2 cut(s) | 543, 1041 |
| SspMI | CTAG | 3 cut(s) | 233, 914, 983 |
| StyD4I | CCNGG | 3 cut(s) | 589, 1008, 1184 |
| StyI | CCWWGG | 2 cut(s) | 951, 1086 |
| TaaI | ACNGT | 3 cut(s) | 136, 172, 811 |
| TaiI | ACGT | 2 cut(s) | 49, 761 |
| TasI | AATT | 4 cut(s) | 482, 604, 925, 1221 |
| TatI | WGTACW | 2 cut(s) | 175, 714 |
| TauI | GCSGC | 1 cut(s) | 546 |
| TfiI | GAWTC | 2 cut(s) | 854, 1044 |
| Tru1I | TTAA | 4 cut(s) | 372, 657, 731, 1231 |
| Tru9I | TTAA | 4 cut(s) | 372, 657, 731, 1231 |
| TscAI | CASTG | 3 cut(s) | 730, 814, 1176 |
| TseFI | GTSAC | 1 cut(s) | 1128 |
| TseI | GCWGC | 4 cut(s) | 142, 311, 416, 1217 |
| Tsp45I | GTSAC | 1 cut(s) | 1128 |
| TspDTI | ATGAA | 4 cut(s) | 27, 466, 506, 831 |
| TspGWI | ACGGA | 1 cut(s) | 725 |
| TspRI | CASTG | 3 cut(s) | 730, 814, 1176 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1191 |
| VpaK11BI | GGWCC | 1 cut(s) | 593 |
| XapI | RAATTY | 1 cut(s) | 604 |
| XceI | RCATGY | 1 cut(s) | 844 |
| XspI | CTAG | 3 cut(s) | 233, 914, 983 |
| ZrmI | AGTACT | 1 cut(s) | 177 |