RchiOBHm_Chr1g0330301

Argonaute

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001623
Physical Location & Seq
Forward (+)
20063458 .. 20069292
5835 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55951

Sequence Viewer

Length: 2760 bp
ATGGGTTCTTCAAATCCCGAAGGAGCCGAACTCCCCCCTCCTCCGCCCATTCCGCCAAACGTTGTCCCAATTGTAGCAGGAGAAAAACCTCTTGAACTAATTAACAAACCATCTCCTCCAAAACGTGTTCCCATGAAAAGGCCTGGCATTGGATCTAAAGGTCAAAGGATTTCACTTCTTACCAACCATTTCAAAGTGGGATTGAACATATCTAATGCTGAGTATTACCATTATAGTATTGCCATGCAATATGATGATGGAACCGAAGTTGACGGGAAAGGCATTGGACGTAAGGTTCTTGACAAAGTAAAAGACACATATAGTGTGGAGCTGGAAAACAAGGATTTTGCTTATGATGGAGAGAAGAGCTTGTTTACTGTTGGGCAGCTCCCTCATAAAAAACTTGATTTCACAGTAGTACTGGATGACATATCATCAAGCAGGACGAATGGGGGATCTGGAGGCAGTTATTCCCTAGCAGAGAGTCAGGGCGATAGGAAGAGAGTCAAGCAGTCATTTCAATCCAAAACAATAAAGGTACAGGTCAACTTTGCTGCTAAAATCCCAATGCAAGCAATCGCGAATGCCTTGCGAGGTCAGGACTCTGACCATTTTCAGGAAGCAGTTAGAGTTCTTGACATCATTATAAGGCAGAATGCTGCAAAGCAGGGTTGTCTCCTTGTTCGGCAGTCTTTCTTCCATAACAACCCGAGGAACTTCATAGAGTTGGGAGGAGGGGTGTTAGGCTGCAGGGGTTTCCATTCAAGCTTCCGGGCCACGCAAGGCGGCCTATCCCTGAATATGGATGCGTCCACTACAATGATTGTAAAACCTGGTCCTGTTTTGAATTTCCTCATGGAGAACCAGAATGTCAAAACTCCTTACCAGATTGATTGGAATAAGGCTAAGAGGATGCTAAAAAATCTAAAGGTTGAGACCTATGCTTCCAAGATGGAGTACAAAATCACTGGATTGAGTGATAAACCCTGCAGACAGCAGACGTTCTTTTTGAAATCAAAAGGAGGACAGGATGGAGATGGAGAAGAGATCACTGTTTATGAATACTTTGCCCAGCATAAGCACATGCAGTTACGTGACTCAGCAGATTTTCCCTGCATCAATGTTGGAAAACCAAAGAAACCTTCTTACTTTCCCCTAGAGCTTTGTAATTTGGTTTCCTTGCAACGCTATACCAAGGCTTTATCCAATCTCCAAAGGGCTTCACTAGTGGAGAAGTCTCGGCAGAAACCCCAGGAGCGAATGTCAACTTTGCGTGATGCACTGAAGAGTAGTAAATATGAGGCTGACATGATGCTTCAGTCTTCTGGAATATCGATTGGTACAGAATTTATGCAGGTTGAAGGCCGTGTTTTGTCAGCCCCAAGGTTGAAAGTGGGAAATGGAGAGGATTTTTCTCCTCGGAATGGGAGATGGAATTTCAACAATAAGAAATTAGTAGAACCTGTAAAACTAGAGCGCTGGGCTGTTGTAAATTTCTCTGCTCGCTGTGACATTCGCTTCCTGGTCAACACTATGATAAAGTGTGGAGACATGAAAGGAATTTCCATCAACCCTCCGTTTAATGTGTTTGAAGAGAGCATTCAGAATAGACGTGAGTCATCTCTGAGTAGAGTAGAAAAGATGTTTGAATACATTAAGTCCAAACTTCCGGGACCACCTCAGTTTTTGTTGTGCATTCTTCCAGAGAGGAAGAATTCTGACATATATGGTCCATGGAAAAGGAAAAACCTTTCAGACGTTGGGATTGTAACACAGTGTATTGCACCAACTAAAGTGAATGACCAATACATCACAAATGTGCTCCTGAAAATTAATACAAAGGTAAGTTACAATGACATCAATTATTTGAGTTTAATCATTTATGTAGCAATCTTGATCTTCTTTGTTTTATCTGCCCATATGCAGCTTGGTGGAATCAACTCCTTGCTAATGGTGGAGCATTCTCCTTCTCTGCCCTTGGTTTCCAAGTCCCCCACTCTGATTTTAGGGATGGATGTGTCACATGGCTCACCTGGACGTTCTGATGTGCCTTCTATTGCAGCGGTGGTCAGTTCCAGGAAATGGCCTTTGATTTCTCGTTACCGAGCTGCAGTTCGTACTCAATCACCAAAAGTAGAAATGATTGCTAATCTGTTCAAGCCTGTGTCTGATAAAGAGGACCAAGGCATAATCAAGGATGGAGTGAGTGAGTCACAGTTCAACCAAGTCTTGAATGTAGAATTGGAGCAGATTATTGAGGCCTGCAAGTTTCTTGATGAGAGCTGGTGTCCAAAGTTCATGGTTATTATTGCACAAAAGAATCATCATACAAAATTTTTTCAGGCTGGTGGTTCTCCTGACAATGTTCCACCTGGGACTATTATTGACAACAAAGTCTGTCATCCAAAGAACAATGATTTCTACTTATGTTCTCATGCTGGGATGATTGGAACAACTCGTCCTACTCATTATCATGTTCTATATGATGAACTTGGCTTCTCAGCGGATGACTTGCAAGAACTTGTTCATTCTTTATCATATGTTTACCAAAGGAGCACAACGGCCATATCTGTAGTTGCTCCGGTATGCTATGCCCATCTAGCAGCAGCACAGATGAGTCAGTTTATTAAGTTCGACGAAACATCAGAGACTGCTTCAAGCCAAGGTGGTTCTGGTGGTGTTACTGTTGCTGGAGCTGTGCCAGTGCAGGAGTTACCAAGGCTACATGAAAGTGTCGTTGACTCCATGTTCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

919

Amino Acids

102.32

Weight (kDa)

9.06

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 55 - 216 4.6e-26 N-terminal domain of argonaute
ArgoL1 PF08699 228 - 277 3.2e-17 Argonaute linker 1 domain
PAZ PF02170 282 - 409 2.3e-28 PAZ domain
ArgoL2 PF16488 419 - 464 2.4e-09 Argonaute linker 2 domain
ArgoMid PF16487 472 - 553 1.4e-06 Mid domain of argonaute
Piwi PF02171 563 - 877 2e-85 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AasI GACNNNNNNGTC 1 cut(s) 2393
Acc36I ACCTGC 1 cut(s) 1345
AccB7I CCANNNNNTGG 1 cut(s) 2082
AccII CGCG 1 cut(s) 581
AciI CCGC 5 cut(s) 44, 53, 786, 2063, 2504
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 160, 463
AcoI YGGCCR 1 cut(s) 2562
AcsI RAATTY 7 cut(s) 847, 1346, 1435, 1492, 1560, 1714, 2333
AcuI CTGAAG 2 cut(s) 1301, 1304
AfaI GTAC 5 cut(s) 420, 540, 959, 1342, 2119
AfeI AGCGCT 1 cut(s) 1478
AfiI CCNNNNNNNGG 6 cut(s) 138, 149, 616, 802, 1424, 2082
AflIII ACRYGT 1 cut(s) 124
AhlI ACTAGT 1 cut(s) 1225
AjiI CACGTC 1 cut(s) 1613
AjnI CCWGG 7 cut(s) 142, 832, 1251, 1521, 2032, 2075, 2371
AjuI GAANNNNNNNTTGG 4 cut(s) 1126, 1158, 2225, 2257
AleI CACNNNNGTG 1 cut(s) 1817
AloI GAACNNNNNNTCC 4 cut(s) 279, 311, 2443, 2475
AluBI AGCT 9 cut(s) 331, 369, 388, 768, 1162, 1927, 2108, 2283, 2696
AluI AGCT 9 cut(s) 331, 369, 388, 768, 1162, 1927, 2108, 2283, 2696
Alw21I GWGCWC 2 cut(s) 1824, 2558
Alw26I GTCTC 5 cut(s) 680, 929, 1242, 1542, 2642
AlwI GGATC 2 cut(s) 160, 463
AlwNI CAGNNNCTG 1 cut(s) 2651
Ama87I CYCGRG 1 cut(s) 709
Aor51HI AGCGCT 1 cut(s) 1478
AoxI GGCC 7 cut(s) 140, 774, 787, 1363, 2084, 2259, 2562
ApeKI GCWGC 9 cut(s) 385, 554, 659, 747, 1924, 2060, 2108, 2603, 2606
ApoI RAATTY 7 cut(s) 847, 1346, 1435, 1492, 1560, 1714, 2333
ArsI GACNNNNNNTTYG 2 cut(s) 991, 1023
AseI ATTAAT 1 cut(s) 1833
Asp700I GAANNNNTTC 1 cut(s) 2523
AspLEI GCGC 1 cut(s) 1479
AspS9I GGNCC 5 cut(s) 774, 836, 1673, 1730, 2179
AsuC2I CCSGG 2 cut(s) 773, 1671
AsuHPI GGTGA 2 cut(s) 2022, 2118
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 4 cut(s) 836, 1673, 1730, 2179
BbsI GAAGAC 1 cut(s) 1314
Bbv12I GWGCWC 2 cut(s) 1824, 2558
BbvI GCAGC 9 cut(s) 397, 541, 646, 734, 1936, 2072, 2095, 2615, 2618
BceAI ACGGC 2 cut(s) 1350, 2577
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BciT130I CCWGG 7 cut(s) 144, 834, 1253, 1523, 2034, 2077, 2373
BcnI CCSGG 2 cut(s) 773, 1671
BcoDI GTCTC 5 cut(s) 680, 929, 1242, 1542, 2642
BcuI ACTAGT 1 cut(s) 1225
BfaI CTAG 5 cut(s) 476, 1157, 1226, 1472, 2600
BfmI CTRYAG 4 cut(s) 748, 988, 2109, 2571
BfoI RGCGCY 1 cut(s) 1480
BfuAI ACCTGC 1 cut(s) 1345
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 9 cut(s) 144, 773, 834, 1253, 1523, 1671, 2034, 2077, 2373
Bme18I GGWCC 4 cut(s) 836, 1673, 1730, 2179
BmeT110I CYCGRG 1 cut(s) 709
BmgBI CACGTC 1 cut(s) 1613
BmgT120I GGNCC 5 cut(s) 774, 836, 1673, 1730, 2179
BmiI GGNNCC 3 cut(s) 25, 262, 1674
BmrFI CCNGG 9 cut(s) 144, 773, 834, 1253, 1523, 1671, 2034, 2077, 2373
BmsI GCATC 5 cut(s) 796, 903, 1125, 1267, 1302
BoxI GACNNNNGTC 1 cut(s) 1615
BpiI GAAGAC 1 cut(s) 1314
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 2 cut(s) 480, 2712
BpuMI CCSGG 2 cut(s) 773, 1671
Bsa29I ATCGAT 1 cut(s) 1334
BsaAI YACGTR 1 cut(s) 1094
BsaI GGTCTC 1 cut(s) 929
BsaWI WCCGGW 1 cut(s) 2581
BsaXI ACNNNNNCTCC 4 cut(s) 723, 753, 1247, 1277
Bsc4I CCNNNNNNNGG 6 cut(s) 138, 149, 616, 802, 1424, 2082
Bse1I ACTGG 3 cut(s) 426, 973, 2702
BseBI CCWGG 7 cut(s) 144, 834, 1253, 1523, 2034, 2077, 2373
BseCI ATCGAT 1 cut(s) 1334
BseLI CCNNNNNNNGG 6 cut(s) 138, 149, 616, 802, 1424, 2082
BseMII CTCAG 5 cut(s) 210, 1113, 1616, 1694, 2514
BseNI ACTGG 3 cut(s) 426, 973, 2702
BseRI GAGGAG 4 cut(s) 30, 105, 747, 1407
BseXI GCAGC 9 cut(s) 397, 541, 646, 734, 1936, 2072, 2095, 2615, 2618
BseYI CCCAGC 3 cut(s) 1071, 1479, 2438
BsgI GTGCAG 1 cut(s) 2726
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 7 cut(s) 142, 776, 789, 1365, 2086, 2261, 2564
BshVI ATCGAT 1 cut(s) 1334
BsiHKAI GWGCWC 2 cut(s) 1824, 2558
BsiHKCI CYCGRG 1 cut(s) 709
BsiSI CCGG 3 cut(s) 772, 1670, 2582
BslFI GGGAC 4 cut(s) 50, 1686, 1975, 2389
BslI CCNNNNNNNGG 6 cut(s) 138, 149, 616, 802, 1424, 2082
BsmAI GTCTC 5 cut(s) 680, 929, 1242, 1542, 2642
BsmFI GGGAC 4 cut(s) 50, 1686, 1975, 2389
BsmI GAATGC 5 cut(s) 589, 661, 1599, 1695, 1960
BsnI GGCC 7 cut(s) 142, 776, 789, 1365, 2086, 2261, 2564
Bso31I GGTCTC 1 cut(s) 929
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 1824, 2558
Bsp143I GATC 4 cut(s) 152, 455, 1047, 1896
Bsp19I CCATGG 1 cut(s) 1733
Bsp68I TCGCGA 1 cut(s) 581
BspACI CCGC 5 cut(s) 44, 53, 786, 2063, 2504
BspANI GGCC 7 cut(s) 142, 776, 789, 1365, 2086, 2261, 2564
BspCNI CTCAG 5 cut(s) 211, 1112, 1617, 1693, 2513
BspDI ATCGAT 1 cut(s) 1334
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 3 cut(s) 25, 262, 1674
BspMAI CTGCAG 3 cut(s) 752, 992, 2113
BspMI ACCTGC 1 cut(s) 1345
BspPI GGATC 2 cut(s) 160, 463
BspQI GCTCTTC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 929
BsrI ACTGG 3 cut(s) 426, 973, 2702
BssMI GATC 4 cut(s) 152, 455, 1047, 1896
BssT1I CCWWGG 7 cut(s) 1194, 1382, 1733, 1977, 2182, 2662, 2717
Bst2UI CCWGG 7 cut(s) 144, 834, 1253, 1523, 2034, 2077, 2373
Bst4CI ACNGT 6 cut(s) 379, 415, 1054, 1776, 2217, 2686
Bst6I CTCTTC 5 cut(s) 359, 494, 1038, 1280, 1587
BstBAI YACGTR 1 cut(s) 1094
BstC8I GCNNGC 3 cut(s) 573, 1504, 2263
BstDEI CTNAG 6 cut(s) 219, 906, 1099, 1625, 1680, 2500
BstDSI CCRYGG 1 cut(s) 1733
BstFNI CGCG 1 cut(s) 581
BstH2I RGCGCY 1 cut(s) 1480
BstHHI GCGC 1 cut(s) 1479
BstKTI GATC 4 cut(s) 155, 458, 1050, 1899
BstMAI GTCTC 5 cut(s) 680, 929, 1242, 1542, 2642
BstMBI GATC 4 cut(s) 152, 455, 1047, 1896
BstMWI GCNNNNNNNGC 2 cut(s) 52, 2600
BstNI CCWGG 7 cut(s) 144, 834, 1253, 1523, 2034, 2077, 2373
BstNSI RCATGY 1 cut(s) 1087
BstPAI GACNNNNGTC 1 cut(s) 1615
BstSCI CCNGG 9 cut(s) 142, 771, 832, 1251, 1521, 1669, 2032, 2075, 2371
BstSFI CTRYAG 4 cut(s) 748, 988, 2109, 2571
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 9 cut(s) 397, 541, 646, 734, 1936, 2072, 2095, 2615, 2618
BstV2I GAAGAC 1 cut(s) 1314
BstX2I RGATCY 2 cut(s) 152, 455
BstYI RGATCY 2 cut(s) 152, 455
Bsu15I ATCGAT 1 cut(s) 1334
BsuRI GGCC 7 cut(s) 142, 776, 789, 1365, 2086, 2261, 2564
BsuTUI ATCGAT 1 cut(s) 1334
BtgI CCRYGG 1 cut(s) 1733
BtrI CACGTC 1 cut(s) 1613
BtsIMutI CAGTG 5 cut(s) 966, 1050, 1280, 1781, 2709
BtuMI TCGCGA 1 cut(s) 581
BveI ACCTGC 1 cut(s) 1345
Cac8I GCNNGC 3 cut(s) 573, 1504, 2263
CaiI CAGNNNCTG 1 cut(s) 2651
CfoI GCGC 1 cut(s) 1479
Cfr13I GGNCC 5 cut(s) 774, 836, 1673, 1730, 2179
ClaI ATCGAT 1 cut(s) 1334
CseI GACGC 1 cut(s) 798
CsiI ACCWGGT 1 cut(s) 832
Csp6I GTAC 5 cut(s) 419, 539, 958, 1341, 2118
CviQI GTAC 5 cut(s) 419, 539, 958, 1341, 2118
DdeI CTNAG 6 cut(s) 219, 906, 1099, 1625, 1680, 2500
DpnI GATC 4 cut(s) 154, 457, 1049, 1898
DpnII GATC 4 cut(s) 152, 455, 1047, 1896
DrdI GACNNNNNNGTC 1 cut(s) 2393
DseDI GACNNNNNNGTC 1 cut(s) 2393
EaeI YGGCCR 1 cut(s) 2562
Eam1104I CTCTTC 5 cut(s) 359, 494, 1038, 1280, 1587
EarI CTCTTC 5 cut(s) 359, 494, 1038, 1280, 1587
EciI GGCGGA 2 cut(s) 33, 42
Eco130I CCWWGG 7 cut(s) 1194, 1382, 1733, 1977, 2182, 2662, 2717
Eco147I AGGCCT 2 cut(s) 142, 2261
Eco31I GGTCTC 1 cut(s) 929
Eco47I GGWCC 4 cut(s) 836, 1673, 1730, 2179
Eco47III AGCGCT 1 cut(s) 1478
Eco57I CTGAAG 2 cut(s) 1301, 1304
Eco88I CYCGRG 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 1714
EcoRII CCWGG 7 cut(s) 142, 832, 1251, 1521, 2032, 2075, 2371
EcoT14I CCWWGG 7 cut(s) 1194, 1382, 1733, 1977, 2182, 2662, 2717
ErhI CCWWGG 7 cut(s) 1194, 1382, 1733, 1977, 2182, 2662, 2717
FaqI GGGAC 4 cut(s) 50, 1686, 1975, 2389
FauNDI CATATG 2 cut(s) 1920, 2539
FspBI CTAG 5 cut(s) 476, 1157, 1226, 1472, 2600
GlaI GCGC 1 cut(s) 1478
GsaI CCCAGC 3 cut(s) 1075, 1483, 2442
GsuI CTGGAG 2 cut(s) 480, 2712
HaeII RGCGCY 1 cut(s) 1480
HaeIII GGCC 7 cut(s) 142, 776, 789, 1365, 2086, 2261, 2564
HapII CCGG 3 cut(s) 772, 1670, 2582
HgaI GACGC 1 cut(s) 798
HhaI GCGC 1 cut(s) 1479
Hin6I GCGC 1 cut(s) 1477
HinP1I GCGC 1 cut(s) 1477
HincII GTYRAC 5 cut(s) 271, 547, 1266, 1528, 2740
HindII GTYRAC 5 cut(s) 271, 547, 1266, 1528, 2740
HindIII AAGCTT 1 cut(s) 766
HpaII CCGG 3 cut(s) 772, 1670, 2582
HphI GGTGA 2 cut(s) 2022, 2118
Hpy166II GTNNAC 8 cut(s) 271, 375, 547, 813, 1266, 1528, 2545, 2740
Hpy8I GTNNAC 8 cut(s) 271, 375, 547, 813, 1266, 1528, 2545, 2740
Hpy99I CGWCG 1 cut(s) 2639
HpyAV CCTTC 5 cut(s) 14, 1152, 1355, 1977, 2061
HpyCH4III ACNGT 6 cut(s) 379, 415, 1054, 1776, 2217, 2686
HpyCH4IV ACGT 8 cut(s) 60, 124, 289, 1001, 1093, 1612, 1758, 2038
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 2600
HpyF3I CTNAG 6 cut(s) 219, 906, 1099, 1625, 1680, 2500
HpySE526I ACGT 8 cut(s) 60, 124, 289, 1001, 1093, 1612, 1758, 2038
HspAI GCGC 1 cut(s) 1477
Kzo9I GATC 4 cut(s) 152, 455, 1047, 1896
LguI GCTCTTC 1 cut(s) 359
Lsp1109I GCAGC 9 cut(s) 397, 541, 646, 734, 1936, 2072, 2095, 2615, 2618
LweI GCATC 5 cut(s) 796, 903, 1125, 1267, 1302
MabI ACCWGGT 1 cut(s) 832
MaeI CTAG 5 cut(s) 476, 1157, 1226, 1472, 2600
MaeII ACGT 8 cut(s) 60, 124, 289, 1001, 1093, 1612, 1758, 2038
MalI GATC 4 cut(s) 154, 457, 1049, 1898
MboI GATC 4 cut(s) 152, 455, 1047, 1896
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 2 cut(s) 152, 455
MhlI GDGCHC 2 cut(s) 1824, 2558
MlyI GAGTC 8 cut(s) 493, 513, 596, 1091, 1625, 2219, 2626, 2735
MmeI TCCRAC 1 cut(s) 1105
MroXI GAANNNNTTC 1 cut(s) 2523
MseI TTAA 6 cut(s) 102, 1581, 1656, 1833, 1874, 2628
MslI CAYNNNNRTG 4 cut(s) 818, 1817, 2472, 2730
MspA1I CMGCKG 2 cut(s) 2063, 2504
MspI CCGG 3 cut(s) 772, 1670, 2582
MspR9I CCNGG 9 cut(s) 144, 773, 834, 1253, 1523, 1671, 2034, 2077, 2373
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 5 cut(s) 589, 661, 1599, 1695, 1960
MvaI CCWGG 7 cut(s) 144, 834, 1253, 1523, 2034, 2077, 2373
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 52, 2600
NciI CCSGG 2 cut(s) 773, 1671
NcoI CCATGG 1 cut(s) 1733
NdeI CATATG 2 cut(s) 1920, 2539
NdeII GATC 4 cut(s) 152, 455, 1047, 1896
NlaIV GGNNCC 3 cut(s) 25, 262, 1674
NmeAIII GCCGAG 1 cut(s) 1219
NmuCI GTSAC 4 cut(s) 1094, 1508, 2019, 2211
NruI TCGCGA 1 cut(s) 581
NspI RCATGY 1 cut(s) 1087
OliI CACNNNNGTG 1 cut(s) 1817
PceI AGGCCT 2 cut(s) 142, 2261
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 5 cut(s) 589, 661, 1599, 1695, 1960
PdmI GAANNNNTTC 1 cut(s) 2523
PfeI GAWTC 2 cut(s) 1935, 2320
PflMI CCANNNNNTGG 1 cut(s) 2082
PfoI TCCNGGA 2 cut(s) 1669, 2075
PleI GAGTC 8 cut(s) 492, 512, 596, 1091, 1624, 2218, 2625, 2735
PpsI GAGTC 8 cut(s) 492, 512, 596, 1091, 1624, 2218, 2625, 2735
Ppu21I YACGTR 1 cut(s) 1094
PshAI GACNNNNGTC 1 cut(s) 1615
PshBI ATTAAT 1 cut(s) 1833
PsiI TTATAA 1 cut(s) 647
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 7 cut(s) 142, 832, 1251, 1521, 2032, 2075, 2371
PspFI CCCAGC 3 cut(s) 1071, 1479, 2438
PspGI CCWGG 7 cut(s) 142, 832, 1251, 1521, 2032, 2075, 2371
PspN4I GGNNCC 3 cut(s) 25, 262, 1674
PspPI GGNCC 5 cut(s) 774, 836, 1673, 1730, 2179
PstI CTGCAG 3 cut(s) 752, 992, 2113
PstNI CAGNNNCTG 1 cut(s) 2651
PsuI RGATCY 2 cut(s) 152, 455
RruI TCGCGA 1 cut(s) 581
RsaI GTAC 5 cut(s) 420, 540, 959, 1342, 2119
RsaNI GTAC 5 cut(s) 419, 539, 958, 1341, 2118
RseI CAYNNNNRTG 4 cut(s) 818, 1817, 2472, 2730
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 6 cut(s) 102, 1581, 1656, 1833, 1874, 2628
Sau3AI GATC 4 cut(s) 152, 455, 1047, 1896
Sau96I GGNCC 5 cut(s) 774, 836, 1673, 1730, 2179
ScaI AGTACT 1 cut(s) 420
SchI GAGTC 8 cut(s) 493, 513, 596, 1091, 1625, 2219, 2626, 2735
ScrFI CCNGG 9 cut(s) 144, 773, 834, 1253, 1523, 1671, 2034, 2077, 2373
SduI GDGCHC 2 cut(s) 1824, 2558
SexAI ACCWGGT 1 cut(s) 832
SfaNI GCATC 5 cut(s) 796, 903, 1125, 1267, 1302
SfcI CTRYAG 4 cut(s) 748, 988, 2109, 2571
SinI GGWCC 4 cut(s) 836, 1673, 1730, 2179
SmiMI CAYNNNNRTG 4 cut(s) 818, 1817, 2472, 2730
SpeI ACTAGT 1 cut(s) 1225
SseBI AGGCCT 2 cut(s) 142, 2261
SsiI CCGC 5 cut(s) 44, 53, 786, 2063, 2504
SspMI CTAG 5 cut(s) 476, 1157, 1226, 1472, 2600
StuI AGGCCT 2 cut(s) 142, 2261
StyD4I CCNGG 9 cut(s) 142, 771, 832, 1251, 1521, 1669, 2032, 2075, 2371
StyI CCWWGG 7 cut(s) 1194, 1382, 1733, 1977, 2182, 2662, 2717
TaaI ACNGT 6 cut(s) 379, 415, 1054, 1776, 2217, 2686
TaiI ACGT 8 cut(s) 63, 127, 292, 1004, 1096, 1615, 1761, 2041
TaqI TCGA 2 cut(s) 1334, 2634
TatI WGTACW 2 cut(s) 418, 957
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 2 cut(s) 1935, 2320
Tru1I TTAA 6 cut(s) 102, 1581, 1656, 1833, 1874, 2628
Tru9I TTAA 6 cut(s) 102, 1581, 1656, 1833, 1874, 2628
TscAI CASTG 5 cut(s) 973, 1057, 1287, 1781, 2709
TseFI GTSAC 4 cut(s) 1094, 1508, 2019, 2211
TseI GCWGC 9 cut(s) 385, 554, 659, 747, 1924, 2060, 2108, 2603, 2606
Tsp45I GTSAC 4 cut(s) 1094, 1508, 2019, 2211
TspDTI ATGAA 8 cut(s) 149, 709, 1074, 1568, 2287, 2502, 2516, 2742
TspGWI ACGGA 1 cut(s) 1566
TspRI CASTG 5 cut(s) 973, 1057, 1287, 1781, 2709
Van91I CCANNNNNTGG 1 cut(s) 2082
VpaK11BI GGWCC 4 cut(s) 836, 1673, 1730, 2179
VspI ATTAAT 1 cut(s) 1833
XapI RAATTY 7 cut(s) 847, 1346, 1435, 1492, 1560, 1714, 2333
XceI RCATGY 1 cut(s) 1087
XcmI CCANNNNNNNNNTGG 2 cut(s) 1925, 2669
XmnI GAANNNNTTC 1 cut(s) 2523
XspI CTAG 5 cut(s) 476, 1157, 1226, 1472, 2600
ZrmI AGTACT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.