RchiOBHm_Chr4g0412801

gene silencing by RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001623
Physical Location & Seq
Reverse (-)
36766892 .. 36769570
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38343

Sequence Viewer

Length: 2679 bp
ATGTCGATGAAGGCGTTAATTGTAGCAGGAGAAAAACCTCTTGAACAAATTAACAACGCATCTACTCCTATACGTGTTCCCATGAAGAGGTTTGGCATTGGATCTAGAGGTAAAAGGATTCCACTTCTTACTAACCATTTCAAGGTGGGAGTGAACAAATATACAGATGACTTTTACCACTATAGTATTGCAATGCAATATGATGACGGAACTCCAGTTGAAGGAAAAGGCATTGGATGCAAAGTTCTTGATCAAATTAAAGAGATATACGGCATGGAGCTGGCAAACAAAGAATTTGCTTATGATGGAGAGAAGAGCTTGTTCACTGTTGGTCAACTCCCTCATAAAAGACTTGATTTCATGATCGTATTGGATGACATGTCATTGAGCAGGTCTGGGGGATCCAGACGCGGTTACTTTTTAGAAGAGAGGGAGGGTGATAGGAAGAGAGTAAAGCAGTCATTTGGTTCCAAAACAATAAAGGTGCAGTTCAACTTTGCTGCTATAATCCCAATGCAAGCAATTGCGAATGCCTTACGAGGTCAGGACTCTGACCATTTTCAGGAAGCAGTTAGAGTTCTTGACATCATTCTTAGGCAGAATGCAGCAAAGCAGGGTTGTCTCCTTGTTCGGCAGTCATTCTTCCATAACAAGCCGAGGAGCTTTATAGAGCTGGGAGGAGGGGTGTTAGGCTGTAGGGGTTTACATTCAAGCTTCCTGGCCACCCAAGGTGGCCTATGTCTGAATATGGATGTATCCACTACAATGATTCTAAAACCTGGTCCTGTTGTGAATTTCCTCATCGAGAACCAAAATGTCAAAACTCCTTACCAGATTGATTGGACTAAGGCTAAGAGGATGCTTAAAAATCTGAAGATTGTGACCTATGCCTCCAAGAAGGAGTACAAAATCACTGGATTGAGTGATAAACCCTGCAGACAGCAGACCTTCTTTTTGAAATCAAAAAAAGGACAGAATGGAGATGGAGTAGAGATCACAGTGTGTGAATACTTTGCTCAGTATAAGCAGATGCAGTTACGCGATTCAGCAGATTTTCCATGCATTAATGTTGGAAAGCCAAAGAAACCATCCTACTTTCCTCTTGAGCTTTGTGACTTGGTTTCTTTGCAACGCTATACCAAGTCATTGTCCAATATCCAAAGGGCTTCACTAGTGGAGAAGTCTAGGCAGAAGCCCCAGGAGCGAATGTCAACTTTGCGTGATGCACTGAGGAGTAGCAAGTATGAGGCTGACGTGATGCTTCGTTCCGCTGGAATATCTATTGGTATAGAACTCATGCAGGTTGAAGGTCGTGTGTTGTCAGCCCCAAATTTGAAAGTGGGAAATGGAGATGTCATTTTTCCTAGGAATGGGAGATGGAATTTCAACAATAAAAAACTAGTAGATCCTGTAAAACTAGAACGCTGGGCTGTTGTGAATTTCTCTGCTCGCTGTGACATTCGGTACCTGGTTGACACTATGATAAAGTGTGGAGATATGAAAGGAATTTCCATCAAGCCTCCATTTGGTGTGTTTGAAGAGAGTATTCAGAACAGACGTCAGTCAGCTCCGGTTAGAGTAGAAAAGATGTTTGAATACATTAAGCCCAAACTTCCAGGACCACCACAGTTTTTGTTGTGCATTCTCCCAGAGAGGAAGAATTCTGAGATATATGGTCCATGGAAAAGGAAAAACCTTTCAGACATTGGGATTGCAACGCAGTGCATTGCACCTACGAAGGTGAACGATCAATACATCACTAACGTGCTCCTGAAAATTAATGCAAAGCTAGGTGGAATGAACTCCTTGCTAACTATGGAGCATTCTCCTTCTCTACCCTTGGTTTCCAAGTCCCCTACTCTGATATTAGGGATGGATGTGTCACATGGCTCACCTGGCCAGTCAAATATGCCTTCTATTGCAGCAGTGGTCAGTTCTAGGCACTGGCCTTGGATTTCTCGTTACCGAGCTGCAGTTCGTACTCAGTCACCAAAAGTAGAAATGATTGCCAATCTGTTCAAGCCTGTGTCTGATGAAGAGGACCAAGGCATAGTCAAGGAACTTTTGCTAGACTTTTATAATACTTCAAACTACAGGAAGCCGGAACAGATTATTATCTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAAGTCTTGAATCTGGAATTGGATCAGATTATTAAGGCCTGCAAGTTCATTGACGAGAGCTGGTCGCCAAAGTTCATGGTTATTATTGCACAAAAGAGACATCACACAAAATTCTTTCAGGCTGGTGGTTCTTCTGACAATGTACCACCTGGGACTATCGTTGACAATAAAGTCTGTGATCCAAGAAACAATGATTTCTACTTGTGTTCTCATGCTGGGATGATTGGAACAAGTCGGCCTACTCATTATCATGTTCTATATGATGAACTTGGCTTTTCAGTAGATGACTTGCAAGAACTAGTTCATTCTTTGTCGTATGTTTATCAAAGGAGCACGACGGCCGTATCTCTAGTTGCTCCAATATGCTATGCCCATCTAGCAGCAGCACAGATGAGTCAGTTCATTAGGTTTGATGAAATGTCAGAGACTGCCTCAAGCCAAGGTAGTGTTACTGTTGCTGGAGATGTGCCAGTGCAGGAATTACCCAGGCTACATAAAAATGTCGTCAACTCCATGTTCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

892

Amino Acids

100.44

Weight (kDa)

9.32

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 38 - 198 2.1e-23 N-terminal domain of argonaute
ArgoL1 PF08699 210 - 258 2.8e-14 Argonaute linker 1 domain
PAZ PF02170 265 - 391 7.2e-26 PAZ domain
ArgoL2 PF16488 401 - 446 5.2e-08 Argonaute linker 2 domain
Piwi PF02171 545 - 852 1.4e-105 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2079
AasI GACNNNNNNGTC 1 cut(s) 2321
AatII GACGTC 1 cut(s) 1561
Acc36I ACCTGC 2 cut(s) 381, 1291
Acc65I GGTACC 1 cut(s) 1464
AccB1I GGYRCC 1 cut(s) 1464
AccII CGCG 2 cut(s) 411, 1041
AciI CCGC 2 cut(s) 411, 1269
AclWI GGATC 6 cut(s) 109, 396, 409, 1400, 2181, 2324
AcoI YGGCCR 3 cut(s) 720, 1897, 2490
AcsI RAATTY 8 cut(s) 293, 793, 1330, 1381, 1438, 1506, 1660, 2261
AcuI CTGAAG 2 cut(s) 893, 2104
AcyI GRCGYC 1 cut(s) 1558
AdeI CACNNNGTG 1 cut(s) 1002
AfaI GTAC 4 cut(s) 905, 1466, 1981, 2295
AfiI CCNNNNNNNGG 6 cut(s) 87, 142, 221, 562, 1370, 1526
AflIII ACRYGT 2 cut(s) 73, 378
AhlI ACTAGT 3 cut(s) 1171, 1399, 2449
AjiI CACGTC 1 cut(s) 1255
AjnI CCWGG 8 cut(s) 717, 778, 1197, 1467, 1615, 1894, 2299, 2636
AjuI GAANNNNNNNTTGG 2 cut(s) 2153, 2185
AleI CACNNNNGTG 1 cut(s) 1763
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
Alw21I GWGCWC 2 cut(s) 1770, 2486
Alw26I GTCTC 3 cut(s) 626, 2242, 2570
AlwI GGATC 6 cut(s) 109, 396, 409, 1400, 2181, 2324
AlwNI CAGNNNCTG 1 cut(s) 2579
AoxI GGCC 7 cut(s) 720, 733, 1897, 1946, 2187, 2387, 2490
ApeKI GCWGC 6 cut(s) 500, 605, 1922, 1970, 2531, 2534
ApoI RAATTY 8 cut(s) 293, 793, 1330, 1381, 1438, 1506, 1660, 2261
ArsI GACNNNNNNTTYG 2 cut(s) 937, 969
AseI ATTAAT 2 cut(s) 1065, 1779
Asp700I GAANNNNTTC 1 cut(s) 2451
Asp718I GGTACC 1 cut(s) 1464
AspA2I CCTAGG 1 cut(s) 1364
AspS9I GGNCC 4 cut(s) 782, 1619, 1676, 2041
AsuHPI GGTGA 4 cut(s) 449, 1753, 1884, 1980
AvaII GGWCC 4 cut(s) 782, 1619, 1676, 2041
AvrII CCTAGG 1 cut(s) 1364
BaeI ACNNNNGTAYC 2 cut(s) 2478, 2511
BalI TGGCCA 2 cut(s) 722, 1899
BamHI GGATCC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 1464
Bbv12I GWGCWC 2 cut(s) 1770, 2486
BbvI GCAGC 6 cut(s) 487, 617, 1934, 1957, 2543, 2546
BccI CCATC 8 cut(s) 299, 977, 1096, 1371, 1520, 1867, 2120, 2532
BceAI ACGGC 3 cut(s) 286, 2477, 2505
BciT130I CCWGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 3 cut(s) 626, 2242, 2570
BcuI ACTAGT 3 cut(s) 1171, 1399, 2449
BfmI CTRYAG 5 cut(s) 181, 694, 934, 1971, 2092
BfuAI ACCTGC 2 cut(s) 381, 1291
BfuI GTATCC 1 cut(s) 766
BisI GCNGC 6 cut(s) 501, 606, 1923, 1971, 2532, 2535
BlnI CCTAGG 1 cut(s) 1364
BlsI GCNGC 6 cut(s) 502, 607, 1924, 1972, 2533, 2536
Bme1390I CCNGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
Bme18I GGWCC 4 cut(s) 782, 1619, 1676, 2041
BmgBI CACGTC 1 cut(s) 1255
BmgT120I GGNCC 4 cut(s) 782, 1619, 1676, 2041
BmiI GGNNCC 3 cut(s) 403, 469, 1466
BmrFI CCNGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
BmsI GCATC 6 cut(s) 68, 227, 849, 1020, 1213, 1248
BoxI GACNNNNGTC 1 cut(s) 1561
BplI GAGNNNNNCTC 2 cut(s) 2567, 2599
BpmI CTGGAG 2 cut(s) 198, 2631
BpuEI CTTGAG 2 cut(s) 1124, 2569
BsaAI YACGTR 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 2114
BsaHI GRCGYC 1 cut(s) 1558
BsaWI WCCGGW 1 cut(s) 1570
BsaXI ACNNNNNCTCC 6 cut(s) 669, 699, 972, 1002, 1193, 1223
Bsc4I CCNNNNNNNGG 6 cut(s) 87, 142, 221, 562, 1370, 1526
Bse1I ACTGG 5 cut(s) 215, 919, 1900, 1949, 2621
Bse3DI GCAATG 2 cut(s) 198, 1725
Bse8I GATNNNNATC 1 cut(s) 2114
BseBI CCWGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
BseGI GGATG 9 cut(s) 242, 379, 757, 864, 1088, 1878, 1882, 2131, 2376
BseJI GATNNNNATC 1 cut(s) 2114
BseLI CCNNNNNNNGG 6 cut(s) 87, 142, 221, 562, 1370, 1526
BseMI GCAATG 2 cut(s) 198, 1725
BseMII CTCAG 4 cut(s) 1031, 1220, 1656, 1997
BseNI ACTGG 5 cut(s) 215, 919, 1900, 1949, 2621
BseRI GAGGAG 3 cut(s) 673, 693, 1246
BseX3I CGGCCG 1 cut(s) 2490
BseXI GCAGC 6 cut(s) 487, 617, 1934, 1957, 2543, 2546
BseYI CCCAGC 3 cut(s) 673, 1425, 2366
BsgI GTGCAG 2 cut(s) 506, 2645
Bsh1236I CGCG 2 cut(s) 411, 1041
Bsh1285I CGRYCG 1 cut(s) 2493
BshFI GGCC 7 cut(s) 722, 735, 1899, 1948, 2189, 2389, 2492
BshNI GGYRCC 1 cut(s) 1464
BsiEI CGRYCG 1 cut(s) 2493
BsiHKAI GWGCWC 2 cut(s) 1770, 2486
BsiSI CCGG 2 cut(s) 1571, 2102
BslFI GGGAC 2 cut(s) 1837, 2317
BslI CCNNNNNNNGG 6 cut(s) 87, 142, 221, 562, 1370, 1526
BsmAI GTCTC 3 cut(s) 626, 2242, 2570
BsmFI GGGAC 2 cut(s) 1837, 2317
BsmI GAATGC 4 cut(s) 535, 607, 1641, 1822
BsnI GGCC 7 cut(s) 722, 735, 1899, 1948, 2189, 2389, 2492
Bsp1286I GDGCHC 2 cut(s) 1770, 2486
Bsp143I GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
Bsp19I CCATGG 1 cut(s) 1679
BspACI CCGC 2 cut(s) 411, 1269
BspANI GGCC 7 cut(s) 722, 735, 1899, 1948, 2189, 2389, 2492
BspCNI CTCAG 4 cut(s) 1030, 1221, 1657, 1996
BspFNI CGCG 2 cut(s) 411, 1041
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 403, 469, 1466
BspMAI CTGCAG 2 cut(s) 938, 1975
BspMI ACCTGC 2 cut(s) 381, 1291
BspPI GGATC 6 cut(s) 109, 396, 409, 1400, 2181, 2324
BspQI GCTCTTC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 1464
BsrDI GCAATG 2 cut(s) 198, 1725
BsrI ACTGG 5 cut(s) 215, 919, 1900, 1949, 2621
BssMI GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
BssNI GRCGYC 1 cut(s) 1558
BssT1I CCWWGG 7 cut(s) 727, 1364, 1679, 1839, 1949, 2044, 2590
Bst2UI CCWGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
Bst4CI ACNGT 5 cut(s) 328, 1000, 1629, 2145, 2605
Bst6I CTCTTC 6 cut(s) 80, 308, 420, 440, 1533, 2031
BstACI GRCGYC 1 cut(s) 1558
BstAPI GCANNNNNTGC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 4 cut(s) 282, 519, 1450, 2191
BstDEI CTNAG 7 cut(s) 593, 846, 852, 1017, 1229, 1665, 1983
BstDSI CCRYGG 1 cut(s) 1679
BstF5I GGATG 9 cut(s) 242, 379, 757, 864, 1088, 1878, 1882, 2131, 2376
BstFNI CGCG 2 cut(s) 411, 1041
BstKTI GATC 9 cut(s) 104, 253, 366, 404, 996, 1408, 1750, 2176, 2332
BstMAI GTCTC 3 cut(s) 626, 2242, 2570
BstMBI GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
BstMCI CGRYCG 1 cut(s) 2493
BstMWI GCNNNNNNNGC 4 cut(s) 237, 1201, 1896, 2528
BstNI CCWGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
BstNSI RCATGY 1 cut(s) 382
BstPAI GACNNNNGTC 1 cut(s) 1561
BstSCI CCNGG 8 cut(s) 717, 778, 1197, 1467, 1615, 1894, 2299, 2636
BstSFI CTRYAG 5 cut(s) 181, 694, 934, 1971, 2092
BstUI CGCG 2 cut(s) 411, 1041
BstV1I GCAGC 6 cut(s) 487, 617, 1934, 1957, 2543, 2546
BstX2I RGATCY 3 cut(s) 101, 401, 1405
BstYI RGATCY 3 cut(s) 101, 401, 1405
BstZI CGGCCG 1 cut(s) 2490
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 7 cut(s) 722, 735, 1899, 1948, 2189, 2389, 2492
BtgI CCRYGG 1 cut(s) 1679
BtrI CACGTC 1 cut(s) 1255
BtsCI GGATG 9 cut(s) 242, 379, 757, 864, 1088, 1878, 1882, 2131, 2376
BtsI GCAGTG 2 cut(s) 1727, 1932
BtsIMutI CAGTG 8 cut(s) 324, 912, 1005, 1226, 1727, 1932, 1942, 2628
BveI ACCTGC 2 cut(s) 381, 1291
Cac8I GCNNGC 4 cut(s) 282, 519, 1450, 2191
CaiI CAGNNNCTG 1 cut(s) 2579
CciI TCATGA 1 cut(s) 360
Cfr13I GGNCC 4 cut(s) 782, 1619, 1676, 2041
CseI GACGC 1 cut(s) 417
CsiI ACCWGGT 2 cut(s) 778, 1467
Csp6I GTAC 4 cut(s) 904, 1465, 1980, 2294
CspCI CAANNNNNGTGG 2 cut(s) 1614, 1649
CviQI GTAC 4 cut(s) 904, 1465, 1980, 2294
DdeI CTNAG 7 cut(s) 593, 846, 852, 1017, 1229, 1665, 1983
DpnI GATC 9 cut(s) 103, 252, 365, 403, 995, 1407, 1749, 2175, 2331
DpnII GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
DraIII CACNNNGTG 1 cut(s) 1002
DrdI GACNNNNNNGTC 1 cut(s) 2321
DseDI GACNNNNNNGTC 1 cut(s) 2321
EaeI YGGCCR 3 cut(s) 720, 1897, 2490
EagI CGGCCG 1 cut(s) 2490
Eam1104I CTCTTC 6 cut(s) 80, 308, 420, 440, 1533, 2031
EarI CTCTTC 6 cut(s) 80, 308, 420, 440, 1533, 2031
EclXI CGGCCG 1 cut(s) 2490
Eco130I CCWWGG 7 cut(s) 727, 1364, 1679, 1839, 1949, 2044, 2590
Eco147I AGGCCT 1 cut(s) 2189
Eco47I GGWCC 4 cut(s) 782, 1619, 1676, 2041
Eco52I CGGCCG 1 cut(s) 2490
Eco57I CTGAAG 2 cut(s) 893, 2104
EcoRI GAATTC 1 cut(s) 1660
EcoRII CCWGG 8 cut(s) 717, 778, 1197, 1467, 1615, 1894, 2299, 2636
EcoT14I CCWWGG 7 cut(s) 727, 1364, 1679, 1839, 1949, 2044, 2590
EcoT22I ATGCAT 1 cut(s) 1064
ErhI CCWWGG 7 cut(s) 727, 1364, 1679, 1839, 1949, 2044, 2590
FaqI GGGAC 2 cut(s) 1837, 2317
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 6 cut(s) 501, 606, 1923, 1971, 2532, 2535
FokI GGATG 9 cut(s) 249, 386, 764, 871, 1075, 1885, 1889, 2138, 2383
Fsp4HI GCNGC 6 cut(s) 501, 606, 1923, 1971, 2532, 2535
GluI GCNGC 6 cut(s) 501, 606, 1923, 1971, 2532, 2535
GsaI CCCAGC 3 cut(s) 677, 1429, 2370
GsuI CTGGAG 2 cut(s) 198, 2631
HaeIII GGCC 7 cut(s) 722, 735, 1899, 1948, 2189, 2389, 2492
HapII CCGG 2 cut(s) 1571, 2102
HgaI GACGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 1558
HincII GTYRAC 5 cut(s) 335, 1212, 1474, 2314, 2659
HindII GTYRAC 5 cut(s) 335, 1212, 1474, 2314, 2659
HindIII AAGCTT 1 cut(s) 712
HinfI GANTC 7 cut(s) 118, 548, 769, 1043, 2138, 2161, 2545
HpaII CCGG 2 cut(s) 1571, 2102
HphI GGTGA 4 cut(s) 449, 1753, 1884, 1980
Hpy166II GTNNAC 9 cut(s) 154, 324, 335, 704, 1212, 1474, 1744, 2314, 2659
Hpy8I GTNNAC 9 cut(s) 154, 324, 335, 704, 1212, 1474, 1744, 2314, 2659
Hpy99I CGWCG 1 cut(s) 2491
HpyAV CCTTC 8 cut(s) 4, 215, 892, 958, 1301, 1732, 1839, 1923
HpyCH4III ACNGT 5 cut(s) 328, 1000, 1629, 2145, 2605
HpyCH4IV ACGT 4 cut(s) 73, 1254, 1558, 1764
HpyF10VI GCNNNNNNNGC 4 cut(s) 237, 1201, 1896, 2528
HpyF3I CTNAG 7 cut(s) 593, 846, 852, 1017, 1229, 1665, 1983
HpySE526I ACGT 4 cut(s) 73, 1254, 1558, 1764
Hsp92I GRCGYC 1 cut(s) 1558
KpnI GGTACC 1 cut(s) 1468
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 8 cut(s) 277, 660, 1201, 1573, 1773, 1819, 2481, 2512
Lsp1109I GCAGC 6 cut(s) 487, 617, 1934, 1957, 2543, 2546
LweI GCATC 6 cut(s) 68, 227, 849, 1020, 1213, 1248
MabI ACCWGGT 2 cut(s) 778, 1467
MaeII ACGT 4 cut(s) 73, 1254, 1558, 1764
MaeIII GTNAC 9 cut(s) 413, 880, 1035, 1112, 1454, 1881, 1961, 1986, 2599
MalI GATC 9 cut(s) 103, 252, 365, 403, 995, 1407, 1749, 2175, 2331
MboI GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 3 cut(s) 101, 401, 1405
MhlI GDGCHC 2 cut(s) 1770, 2486
MlsI TGGCCA 2 cut(s) 722, 1899
MluNI TGGCCA 2 cut(s) 722, 1899
MlyI GAGTC 2 cut(s) 542, 2554
MmeI TCCRAC 1 cut(s) 1051
Mox20I TGGCCA 2 cut(s) 722, 1899
Mph1103I ATGCAT 1 cut(s) 1064
MroXI GAANNNNTTC 1 cut(s) 2451
MscI TGGCCA 2 cut(s) 722, 1899
MseI TTAA 8 cut(s) 17, 51, 258, 864, 1065, 1602, 1779, 2184
MslI CAYNNNNRTG 4 cut(s) 764, 1763, 2400, 2649
Msp20I TGGCCA 2 cut(s) 722, 1899
MspA1I CMGCKG 1 cut(s) 1271
MspI CCGG 2 cut(s) 1571, 2102
MspR9I CCNGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 4 cut(s) 535, 607, 1641, 1822
MvaI CCWGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
MvnI CGCG 2 cut(s) 411, 1041
MwoI GCNNNNNNNGC 4 cut(s) 237, 1201, 1896, 2528
NcoI CCATGG 1 cut(s) 1679
NdeII GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
NlaIV GGNNCC 3 cut(s) 403, 469, 1466
NmeAIII GCCGAG 1 cut(s) 681
NmuCI GTSAC 5 cut(s) 880, 1112, 1454, 1881, 1986
NsiI ATGCAT 1 cut(s) 1064
NspI RCATGY 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 1763
PagI TCATGA 1 cut(s) 360
PceI AGGCCT 1 cut(s) 2189
PciI ACATGT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 4 cut(s) 535, 607, 1641, 1822
PdmI GAANNNNTTC 1 cut(s) 2451
PfeI GAWTC 5 cut(s) 118, 769, 1043, 2138, 2161
PfoI TCCNGGA 1 cut(s) 1615
PkrI GCNGC 6 cut(s) 502, 607, 1924, 1972, 2533, 2536
PleI GAGTC 2 cut(s) 542, 2553
PpsI GAGTC 2 cut(s) 542, 2553
Ppu21I YACGTR 1 cut(s) 74
PscI ACATGT 1 cut(s) 378
PshAI GACNNNNGTC 1 cut(s) 1561
PshBI ATTAAT 2 cut(s) 1065, 1779
PsiI TTATAA 1 cut(s) 2079
Psp6I CCWGG 8 cut(s) 717, 778, 1197, 1467, 1615, 1894, 2299, 2636
PspFI CCCAGC 3 cut(s) 673, 1425, 2366
PspGI CCWGG 8 cut(s) 717, 778, 1197, 1467, 1615, 1894, 2299, 2636
PspN4I GGNNCC 3 cut(s) 403, 469, 1466
PspPI GGNCC 4 cut(s) 782, 1619, 1676, 2041
PsrI GAACNNNNNNTAC 2 cut(s) 1736, 1768
PstI CTGCAG 2 cut(s) 938, 1975
PstNI CAGNNNCTG 1 cut(s) 2579
PsuI RGATCY 3 cut(s) 101, 401, 1405
RsaI GTAC 4 cut(s) 905, 1466, 1981, 2295
RsaNI GTAC 4 cut(s) 904, 1465, 1980, 2294
RseI CAYNNNNRTG 4 cut(s) 764, 1763, 2400, 2649
SapI GCTCTTC 1 cut(s) 308
SaqAI TTAA 8 cut(s) 17, 51, 258, 864, 1065, 1602, 1779, 2184
SatI GCNGC 6 cut(s) 501, 606, 1923, 1971, 2532, 2535
Sau3AI GATC 9 cut(s) 101, 250, 363, 401, 993, 1405, 1747, 2173, 2329
Sau96I GGNCC 4 cut(s) 782, 1619, 1676, 2041
SchI GAGTC 2 cut(s) 542, 2554
ScrFI CCNGG 8 cut(s) 719, 780, 1199, 1469, 1617, 1896, 2301, 2638
SduI GDGCHC 2 cut(s) 1770, 2486
SexAI ACCWGGT 2 cut(s) 778, 1467
SfaNI GCATC 6 cut(s) 68, 227, 849, 1020, 1213, 1248
SfcI CTRYAG 5 cut(s) 181, 694, 934, 1971, 2092
SinI GGWCC 4 cut(s) 782, 1619, 1676, 2041
SmiMI CAYNNNNRTG 4 cut(s) 764, 1763, 2400, 2649
SmlI CTYRAG 2 cut(s) 1103, 2584
SmoI CTYRAG 2 cut(s) 1103, 2584
SpeI ACTAGT 3 cut(s) 1171, 1399, 2449
SseBI AGGCCT 1 cut(s) 2189
SsiI CCGC 2 cut(s) 411, 1269
StuI AGGCCT 1 cut(s) 2189
StyD4I CCNGG 8 cut(s) 717, 778, 1197, 1467, 1615, 1894, 2299, 2636
StyI CCWWGG 7 cut(s) 727, 1364, 1679, 1839, 1949, 2044, 2590
TaaI ACNGT 5 cut(s) 328, 1000, 1629, 2145, 2605
TaiI ACGT 4 cut(s) 76, 1257, 1561, 1767
TaqI TCGA 2 cut(s) 5, 804
TatI WGTACW 1 cut(s) 903
TfiI GAWTC 5 cut(s) 118, 769, 1043, 2138, 2161
Tru1I TTAA 8 cut(s) 17, 51, 258, 864, 1065, 1602, 1779, 2184
Tru9I TTAA 8 cut(s) 17, 51, 258, 864, 1065, 1602, 1779, 2184
TscAI CASTG 8 cut(s) 331, 919, 1005, 1233, 1727, 1932, 1949, 2628
TseFI GTSAC 5 cut(s) 880, 1112, 1454, 1881, 1986
TseI GCWGC 6 cut(s) 500, 605, 1922, 1970, 2531, 2534
Tsp45I GTSAC 5 cut(s) 880, 1112, 1454, 1881, 1986
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 8 cut(s) 331, 919, 1005, 1233, 1727, 1932, 1949, 2628
VpaK11BI GGWCC 4 cut(s) 782, 1619, 1676, 2041
VspI ATTAAT 2 cut(s) 1065, 1779
XapI RAATTY 8 cut(s) 293, 793, 1330, 1381, 1438, 1506, 1660, 2261
XbaI TCTAGA 1 cut(s) 104
XceI RCATGY 1 cut(s) 382
XmaJI CCTAGG 1 cut(s) 1364
XmnI GAANNNNTTC 1 cut(s) 2451
ZraI GACGTC 1 cut(s) 1559
Zsp2I ATGCAT 1 cut(s) 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.