Rorug01G0088800

Argonaute

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001623
Physical Location & Seq
Forward (+)
14441283 .. 14443402
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0088800.1

Sequence Viewer

Length: 936 bp
ATGGCCAATGGTTTCGATTTCGGTTGGTGCTACTGTCCTACTGATGTTGATGGTTCTTGCATTGCTGAAAGTCAAGACACTGGGTCTTCGGCAACCTCATCAAGATTTGCAGTTGGCCAGTTGTCTACTTATCTGGCCTCAGGCCTGCAATTTCAATATCATCAACAGGTGGACTGCATTGTGTTCGACAAGACATGGACTCTTACAATTGGGAAGCCACTGGTTGTTAACACACGACTCATGAAAAATATAGTGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTATTGGTCACGGGGTGAAGGCTATTGTTCAAGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGCGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAATTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

311

Amino Acids

33.14

Weight (kDa)

4.55

Isoelectric Point (pI)

24.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 57 - 281 3.7e-30 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 467, 836
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 3 cut(s) 3, 115, 312
AcsI RAATTY 3 cut(s) 263, 341, 685
AcuI CTGAAG 2 cut(s) 540, 762
AdeI CACNNNGTG 1 cut(s) 412
AgsI TTSAA 2 cut(s) 155, 428
AhdI GACNNNNNGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 3 cut(s) 287, 459, 518
AluI AGCT 3 cut(s) 287, 459, 518
Alw21I GWGCWC 1 cut(s) 610
AlwI GGATC 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 7 cut(s) 3, 115, 135, 142, 312, 318, 371
ApeKI GCWGC 3 cut(s) 281, 284, 887
ApoI RAATTY 3 cut(s) 263, 341, 685
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 2 cut(s) 371, 469
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 5 cut(s) 424, 670, 677, 734, 813
AvaII GGWCC 1 cut(s) 469
AxyI CCTNAGG 1 cut(s) 139
BalI TGGCCA 3 cut(s) 5, 117, 314
BbsI GAAGAC 2 cut(s) 78, 507
Bbv12I GWGCWC 1 cut(s) 610
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 268, 296, 899
BccI CCATC 5 cut(s) 44, 457, 551, 790, 800
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 603
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 1 cut(s) 370
BfaI CTAG 3 cut(s) 509, 545, 578
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 4 cut(s) 282, 285, 837, 888
BlsI GCNGC 4 cut(s) 283, 286, 838, 889
Bme1390I CCNGG 2 cut(s) 370, 603
Bme18I GGWCC 1 cut(s) 469
BmeRI GACNNNNNGTC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 371, 469
BmrFI CCNGG 2 cut(s) 370, 603
BmrI ACTGGG 2 cut(s) 90, 546
BmsI GCATC 2 cut(s) 484, 819
BmuI ACTGGG 2 cut(s) 90, 546
BpiI GAAGAC 2 cut(s) 78, 507
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 594, 614
BpuMI CCSGG 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 309, 315
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bse1I ACTGG 4 cut(s) 85, 118, 225, 541
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 3 cut(s) 60, 477, 873
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 309, 315
BseMI GCAATG 3 cut(s) 60, 477, 873
BseMII CTCAG 2 cut(s) 153, 279
BseNI ACTGG 4 cut(s) 85, 118, 225, 541
BseXI GCAGC 3 cut(s) 268, 296, 899
BshFI GGCC 7 cut(s) 5, 117, 137, 144, 314, 320, 373
BsiHKAI GWGCWC 1 cut(s) 610
BsiSI CCGG 1 cut(s) 369
BsnI GGCC 7 cut(s) 5, 117, 137, 144, 314, 320, 373
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 2 cut(s) 589, 739
BspACI CCGC 2 cut(s) 467, 836
BspANI GGCC 7 cut(s) 5, 117, 137, 144, 314, 320, 373
BspCNI CTCAG 2 cut(s) 152, 280
BspHI TCATGA 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 584
BsrDI GCAATG 3 cut(s) 60, 477, 873
BsrI ACTGG 4 cut(s) 85, 118, 225, 541
BssECI CCNNGG 2 cut(s) 309, 315
BssMI GATC 2 cut(s) 589, 739
BssT1I CCWWGG 2 cut(s) 309, 315
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 4 cut(s) 35, 299, 718, 790
Bst6I CTCTTC 2 cut(s) 351, 902
BstAPI GCANNNNNTGC 1 cut(s) 860
BstC8I GCNNGC 4 cut(s) 146, 528, 774, 865
BstDEI CTNAG 2 cut(s) 139, 288
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 2 cut(s) 592, 742
BstMBI GATC 2 cut(s) 589, 739
BstMWI GCNNNNNNNGC 4 cut(s) 379, 833, 860, 884
BstNI CCWGG 1 cut(s) 603
BstSCI CCNGG 2 cut(s) 368, 601
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 268, 296, 899
BstV2I GAAGAC 2 cut(s) 78, 507
Bsu36I CCTNAGG 1 cut(s) 139
BsuRI GGCC 7 cut(s) 5, 117, 137, 144, 314, 320, 373
BtgZI GCGATG 1 cut(s) 809
BtsIMutI CAGTG 5 cut(s) 78, 218, 304, 593, 786
Cac8I GCNNGC 4 cut(s) 146, 528, 774, 865
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 371, 469
CsiI ACCWGGT 1 cut(s) 601
CviAII CATG 3 cut(s) 195, 241, 383
DdeI CTNAG 2 cut(s) 139, 288
DpnI GATC 2 cut(s) 591, 741
DpnII GATC 2 cut(s) 589, 739
DraIII CACNNNGTG 1 cut(s) 412
DriI GACNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 3 cut(s) 3, 115, 312
Eam1104I CTCTTC 2 cut(s) 351, 902
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 2 cut(s) 351, 902
EciI GGCGGA 1 cut(s) 482
Eco130I CCWWGG 2 cut(s) 309, 315
Eco147I AGGCCT 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 2 cut(s) 540, 762
Eco81I CCTNAGG 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 2 cut(s) 309, 315
ErhI CCWWGG 2 cut(s) 309, 315
FaeI CATG 3 cut(s) 198, 244, 386
FatI CATG 3 cut(s) 194, 240, 382
FbaI TGATCA 1 cut(s) 739
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 4 cut(s) 282, 285, 837, 888
Fsp4HI GCNGC 4 cut(s) 282, 285, 837, 888
FspBI CTAG 3 cut(s) 509, 545, 578
GlaI GCGC 1 cut(s) 381
GluI GCNGC 4 cut(s) 282, 285, 837, 888
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 7 cut(s) 5, 117, 137, 144, 314, 320, 373
HapII CCGG 1 cut(s) 369
HhaI GCGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 198, 244, 386
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 2 cut(s) 229, 295
HindII GTYRAC 2 cut(s) 229, 295
HinfI GANTC 5 cut(s) 199, 237, 361, 541, 818
HpaI GTTAAC 2 cut(s) 229, 295
HpaII CCGG 1 cut(s) 369
HphI GGTGA 5 cut(s) 424, 670, 677, 734, 813
Hpy166II GTNNAC 5 cut(s) 126, 172, 229, 295, 302
Hpy188I TCNGA 2 cut(s) 347, 589
Hpy188III TCNNGA 5 cut(s) 74, 102, 241, 260, 611
Hpy8I GTNNAC 5 cut(s) 126, 172, 229, 295, 302
HpyAV CCTTC 3 cut(s) 409, 515, 757
HpyCH4III ACNGT 4 cut(s) 35, 299, 718, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 379, 833, 860, 884
HpyF3I CTNAG 2 cut(s) 139, 288
Hsp92II CATG 3 cut(s) 198, 244, 386
HspAI GCGC 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 739
KspAI GTTAAC 2 cut(s) 229, 295
Kzo9I GATC 2 cut(s) 589, 739
Lsp1109I GCAGC 3 cut(s) 268, 296, 899
LweI GCATC 2 cut(s) 484, 819
MabI ACCWGGT 1 cut(s) 601
MaeI CTAG 3 cut(s) 509, 545, 578
MaeIII GTNAC 3 cut(s) 404, 658, 665
MalI GATC 2 cut(s) 591, 741
MboI GATC 2 cut(s) 589, 739
MboII GAAGA 5 cut(s) 78, 362, 368, 512, 919
MfeI CAATTG 4 cut(s) 207, 670, 855, 879
MhlI GDGCHC 1 cut(s) 610
MlsI TGGCCA 3 cut(s) 5, 117, 314
MluNI TGGCCA 3 cut(s) 5, 117, 314
MlyI GAGTC 3 cut(s) 193, 231, 812
MnlI CCTC 6 cut(s) 106, 148, 283, 403, 877, 930
Mox20I TGGCCA 3 cut(s) 5, 117, 314
MscI TGGCCA 3 cut(s) 5, 117, 314
MseI TTAA 2 cut(s) 228, 294
MslI CAYNNNNRTG 1 cut(s) 656
Msp20I TGGCCA 3 cut(s) 5, 117, 314
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 2 cut(s) 370, 603
MunI CAATTG 4 cut(s) 207, 670, 855, 879
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 4 cut(s) 379, 833, 860, 884
NciI CCSGG 1 cut(s) 370
NdeII GATC 2 cut(s) 589, 739
NlaIII CATG 3 cut(s) 198, 244, 386
NmuCI GTSAC 3 cut(s) 404, 658, 665
PagI TCATGA 1 cut(s) 240
PceI AGGCCT 1 cut(s) 144
PfeI GAWTC 2 cut(s) 361, 541
PkrI GCNGC 4 cut(s) 283, 286, 838, 889
PleI GAGTC 3 cut(s) 193, 231, 812
PpsI GAGTC 3 cut(s) 193, 231, 812
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspPI GGNCC 2 cut(s) 371, 469
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 656
SaqAI TTAA 2 cut(s) 228, 294
SatI GCNGC 4 cut(s) 282, 285, 837, 888
Sau3AI GATC 2 cut(s) 589, 739
Sau96I GGNCC 2 cut(s) 371, 469
SchI GAGTC 3 cut(s) 193, 231, 812
ScrFI CCNGG 2 cut(s) 370, 603
SduI GDGCHC 1 cut(s) 610
SexAI ACCWGGT 1 cut(s) 601
SfaNI GCATC 2 cut(s) 484, 819
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 2 cut(s) 609, 629
SmoI CTYRAG 2 cut(s) 609, 629
SseBI AGGCCT 1 cut(s) 144
SsiI CCGC 2 cut(s) 467, 836
SspMI CTAG 3 cut(s) 509, 545, 578
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 368, 601
StyI CCWWGG 2 cut(s) 309, 315
TaaI ACNGT 4 cut(s) 35, 299, 718, 790
TaqI TCGA 4 cut(s) 15, 186, 259, 492
TauI GCSGC 1 cut(s) 839
TfiI GAWTC 2 cut(s) 361, 541
Tru1I TTAA 2 cut(s) 228, 294
Tru9I TTAA 2 cut(s) 228, 294
TscAI CASTG 5 cut(s) 85, 225, 304, 600, 793
TseFI GTSAC 3 cut(s) 404, 658, 665
TseI GCWGC 3 cut(s) 281, 284, 887
Tsp45I GTSAC 3 cut(s) 404, 658, 665
TspDTI ATGAA 6 cut(s) 257, 285, 369, 653, 714, 920
TspRI CASTG 5 cut(s) 85, 225, 304, 600, 793
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 3 cut(s) 263, 341, 685
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 3 cut(s) 509, 545, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.