Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001623

Physical Location & Seq

Genomic Coordinates Forward (+)

37956178 .. 37958937

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG189800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATATCTGTGTTTTTGATACAGATGAAAGGCATTGGACGTAAGGTTCTTGAAAAAGTAAAAGACACATATAGTGTGGAGCTGGAAAACAAGGATTTTGCTTATGATGGAGAGAAGAGCTTGTTTACTGTTGGGCAGCTCCCTCATAAAAAACTTGATTTCACAGTAGTACTGGATGACATATCATCAAGCAGGTCTAGGACGAATGGGGGATCGGGGGGCAGTTACTCCCTAGAAGAGAGTCAGGGCGATAGGAAGAGAGTCAAGCAGTCATTTCAATCCAAAACAATAAAGGAAGCAGTTAGAGTTCTTGACATCATTATAAGGCAGAATGCAGCAAAGCAGGGTTGTCTCCTTGTTCTGCAATCTTTCTTCCATAACAACCTGAGGAACTTCATAGAATTGGGAGGAGGGGTGTTAGGCTGCAGGGGTTTTCATTCAAGCTTCCGGGCCACGCAAGGCGGCCTATCCCTGAATATGGATGTGTCCACTACAATGATTGTAAAACCTGGTCCTGTTTTGAATTTCCTCATGGAGAACCAGAATGTCAAAACTCCTTACCAGATTGATTGGATTAAGCTTGGCGGAATCAACTCCTTGCTAATGGTGGAGCATTGTCCTTCTCTGCCCTTGGTATCCAAGTCCCCCACTCTGATTTTAGGGATGGATGTGTCACATGGTTCACCTGGGCGTTCCGATGTGCCTTCTATTGCAGCGGTGACCAAGTTCCAGGAAATGGCCTTTGATTTCTCGTTACCGAGCTGCAGTTCGTACTCAATCACCAAAAGTAGAAATGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

267

Amino Acids

29.38

Weight (kDa)

9.04

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	10 - 107	1.8e-08	N-terminal domain of argonaute
ArgoL1	PF08699	121 - 169	9.2e-18	Argonaute linker 1 domain
Piwi	PF02171	192 - 244	3.7e-08	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21030 AT5G21030 AT5G21150
fragaria_vesca	FvH4_4g13080 FvH4_7g04840 FvH4_7g04840
malus_domestica	MD07G1052200.v1.1 MD07G1052400.v1.1
prunus_persica	Prupe.2G056600_v2.0.a1 Prupe.2G056700_v2.0.a1
pyrus_communis	pycom07g04070 pycom07g04080
rosa_chinensis	RchiOBHm_Chr1g0322921 RchiOBHm_Chr1g0330301 RchiOBHm_Chr4g0412801 RchiOBHm_Chr7g0206231
rosa_laevigata	RLG00000008257 RLG00000029812
rosa_multiflora	Rmu_sc0002224.1_g000009 Rmu_sc0011701.1_g000026
rosa_roxburghii	Rroxscaffold_4G00319970 Rroxscaffold_5G00347500 Rroxscaffold_5G00357050 Rroxscaffold_7G00201260 Rroxscaffold_7G00201270
rosa_rugosa	Rorug01G0088700 Rorug01G0088800 Rorug02G0651800 Rorug04G0117000 Rorug06G0108000 Rorug07G0164100
rosa_samantha	Rh1AG106600 Rh1BG084900 Rh1BG159000 Rh1CG102600 Rh1DG110500 Rh1DG112200 Rh1DG189800 Rh3CG350500 Rh4AG175600 Rh4BG175500 Rh4CG186800 Rh4DG172500 Rh7DG234200
rosa_wichuraiana	Rw0G011280 Rw1G008420 Rw1G008560 Rw4G014740 Rw7G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	736
AciI	CCGC	3 cut(s)	462, 585, 716
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	2 cut(s)	171, 773
AfiI	CCNNNNNNNGG	2 cut(s)	478, 736
AgsI	TTSAA	4 cut(s)	53, 278, 441, 523
AjnI	CCWGG	3 cut(s)	508, 685, 729
AloI	GAACNNNNNNTCC	2 cut(s)	30, 62
AluBI	AGCT	6 cut(s)	82, 120, 139, 444, 580, 762
AluI	AGCT	6 cut(s)	82, 120, 139, 444, 580, 762
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	3 cut(s)	450, 463, 738
ApeKI	GCWGC	5 cut(s)	136, 335, 423, 713, 762
ApoI	RAATTY	1 cut(s)	523
AspS9I	GGNCC	2 cut(s)	450, 512
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	675, 730, 772
AvaII	GGWCC	1 cut(s)	512
AxyI	CCTNAGG	1 cut(s)	386
BbvI	GCAGC	5 cut(s)	148, 347, 410, 725, 749
BccI	CCATC	2 cut(s)	101, 658
BciT130I	CCWGG	3 cut(s)	510, 687, 731
BciVI	GTATCC	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	2 cut(s)	198, 233
BfmI	CTRYAG	2 cut(s)	424, 763
BfuAI	ACCTGC	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	646
BisI	GCNGC	6 cut(s)	137, 336, 424, 463, 714, 763
BlsI	GCNGC	6 cut(s)	138, 337, 425, 464, 715, 764
BmcAI	AGTACT	1 cut(s)	171
Bme1390I	CCNGG	4 cut(s)	449, 510, 687, 731
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	450, 512
BmrFI	CCNGG	4 cut(s)	449, 510, 687, 731
BpuMI	CCSGG	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	630, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 736
Bse1I	ACTGG	1 cut(s)	177
Bse21I	CCTNAGG	1 cut(s)	386
BseBI	CCWGG	3 cut(s)	510, 687, 731
BseDI	CCNNGG	2 cut(s)	630, 686
BseGI	GGATG	4 cut(s)	181, 487, 669, 673
BseLI	CCNNNNNNNGG	2 cut(s)	478, 736
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	5 cut(s)	148, 347, 410, 725, 749
BshFI	GGCC	3 cut(s)	452, 465, 740
BsiSI	CCGG	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	2 cut(s)	478, 736
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	452, 465, 740
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	3 cut(s)	462, 585, 716
BspANI	GGCC	3 cut(s)	452, 465, 740
BspCNI	CTCAG	1 cut(s)	378
BspMAI	CTGCAG	2 cut(s)	428, 767
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	630, 686
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	3 cut(s)	510, 687, 731
Bst4CI	ACNGT	2 cut(s)	130, 166
Bst6I	CTCTTC	3 cut(s)	110, 231, 251
BstDEI	CTNAG	1 cut(s)	386
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	4 cut(s)	181, 487, 669, 673
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	212
BstNI	CCWGG	3 cut(s)	510, 687, 731
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	4 cut(s)	447, 508, 685, 729
BstSFI	CTRYAG	2 cut(s)	424, 763
BstV1I	GCAGC	5 cut(s)	148, 347, 410, 725, 749
Bsu36I	CCTNAGG	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	452, 465, 740
BtsCI	GGATG	4 cut(s)	181, 487, 669, 673
BveI	ACCTGC	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	450, 512
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	2 cut(s)	170, 772
CviAII	CATG	2 cut(s)	532, 677
CviQI	GTAC	2 cut(s)	170, 772
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eam1104I	CTCTTC	3 cut(s)	110, 231, 251
EarI	CTCTTC	3 cut(s)	110, 231, 251
EciI	GGCGGA	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	630
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	3 cut(s)	508, 685, 729
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	2 cut(s)	535, 680
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	2 cut(s)	531, 676
Fnu4HI	GCNGC	6 cut(s)	137, 336, 424, 463, 714, 763
FokI	GGATG	4 cut(s)	188, 494, 676, 680
Fsp4HI	GCNGC	6 cut(s)	137, 336, 424, 463, 714, 763
FspBI	CTAG	2 cut(s)	198, 233
GluI	GCNGC	6 cut(s)	137, 336, 424, 463, 714, 763
HaeIII	GGCC	3 cut(s)	452, 465, 740
HapII	CCGG	1 cut(s)	448
Hin1II	CATG	2 cut(s)	535, 680
HindIII	AAGCTT	2 cut(s)	442, 578
HinfI	GANTC	3 cut(s)	241, 261, 588
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	3 cut(s)	675, 730, 772
Hpy166II	GTNNAC	3 cut(s)	126, 489, 683
Hpy188I	TCNGA	2 cut(s)	654, 697
Hpy188III	TCNNGA	2 cut(s)	50, 311
Hpy8I	GTNNAC	3 cut(s)	126, 489, 683
HpyAV	CCTTC	2 cut(s)	630, 714
HpyCH4III	ACNGT	2 cut(s)	130, 166
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	5 cut(s)	335, 364, 426, 713, 765
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	535, 680
Kzo9I	GATC	1 cut(s)	212
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	3 cut(s)	79, 144, 610
Lsp1109I	GCAGC	5 cut(s)	148, 347, 410, 725, 749
MabI	ACCWGGT	1 cut(s)	508
MaeI	CTAG	2 cut(s)	198, 233
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	4 cut(s)	224, 672, 718, 753
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	4 cut(s)	127, 248, 268, 364
MluCI	AATT	2 cut(s)	401, 523
MlyI	GAGTC	2 cut(s)	250, 270
MnlI	CCTC	5 cut(s)	153, 381, 401, 404, 539
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	4 cut(s)	449, 510, 687, 731
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	3 cut(s)	510, 687, 731
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	535, 680
NmuCI	GTSAC	2 cut(s)	672, 718
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	588
PflMI	CCANNNNNTGG	1 cut(s)	736
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	6 cut(s)	138, 337, 425, 464, 715, 764
PleI	GAGTC	2 cut(s)	249, 269
PpsI	GAGTC	2 cut(s)	249, 269
PsiI	TTATAA	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	508, 685, 729
PspEI	GGTNACC	1 cut(s)	718
PspGI	CCWGG	3 cut(s)	508, 685, 729
PspPI	GGNCC	2 cut(s)	450, 512
PstI	CTGCAG	2 cut(s)	428, 767
RsaI	GTAC	2 cut(s)	171, 773
RsaNI	GTAC	2 cut(s)	170, 772
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	6 cut(s)	137, 336, 424, 463, 714, 763
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	2 cut(s)	450, 512
ScaI	AGTACT	1 cut(s)	171
SchI	GAGTC	2 cut(s)	250, 270
ScrFI	CCNGG	4 cut(s)	449, 510, 687, 731
SexAI	ACCWGGT	1 cut(s)	508
SfcI	CTRYAG	2 cut(s)	424, 763
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	401, 523
SsiI	CCGC	3 cut(s)	462, 585, 716
SspMI	CTAG	2 cut(s)	198, 233
StyD4I	CCNGG	4 cut(s)	447, 508, 685, 729
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	130, 166
TaiI	ACGT	1 cut(s)	43
TasI	AATT	2 cut(s)	401, 523
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	672, 718
TseI	GCWGC	5 cut(s)	136, 335, 423, 713, 762
Tsp45I	GTSAC	2 cut(s)	672, 718
TspDTI	ATGAA	3 cut(s)	41, 385, 425
Van91I	CCANNNNNTGG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	523
XspI	CTAG	2 cut(s)	198, 233
ZrmI	AGTACT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.