Rw7G030700

Argonaute

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001623
Physical Location & Seq
Forward (+)
43585578 .. 43588802
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030700.1

Sequence Viewer

Length: 1206 bp
ATGGCCTCTAAGAGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCGATCCTCCCACTTCCTTCTGCACAGGTACACTCAAAAATTTATTATTTACAAACTAAATTTAGGTGTTCCTAGCATACCCAATAAATCTAATGCTGAGTTTTACCATTATAGTATTGCCATGCAATATGATGATGGAACCGAAGTTGACGACAAAGGCATTGGACGTAAGGTTCTTGAAAAAGTAAAAGACACATATAGTGTGGAGCTGGAAAACAAGGATTTTGCTTATGATGGAGAGAAGAGCTTGTTTACTGTTGGGCAGCTCCCTCATAAAAAACTTGATTTCACAGTAGTACTGGATGATATATCATCAAGCAGGTACTTATATGTACAGGTCAACTTTTCTGCTAAAATCCCAATGCAAGCAATCACAAATGCCTTGCGAGGTCAGGACTCTGACCATTTTCAGGAAGCAGTTAGAGTTCTTGACATCATTATAAGGCAGAATGCAGCAAAGCAGGGTTGTCTCCTTGTTCGGCAATCTTTCTTCCATAACAACCCGAGGAACTTCATAGAATTGGGAGGAGGGGTGTTAGGCTGCAGGGGTTTTCATTCAAGCTTACGGGCCACACTGAAGGCTTGGCTTTCTTTGTTGTTCTACTTAGCTAATCACTATCCTTGTTGGAATATAGATGTGTCCACTACAATGATTGTAAAACCTGGTCTTGTTTTGAATTTCCTCATGGAGAACCAGAATGTCAAAACTCCTTACCAGATTGATTGGATTAAGGCTAAGAGGATGCTAAAAAGTCTAAAGGTTGAGACCTATGCTTCCAAGATGGAGTACAAAATCATTGGATTGAGCGATAAACCCTGCAAACAGCAGACGTTCTTTTTGAAATCAAAAGGAGGACACGATGGAGATGGAGAAGAGATCACTGTTTATGAATACTTTGCCCAGCATAAGCACATGCAGTTACGCGATTCAGCAGATTTTCCCTGCATCAATGTTGGAAAACCAAAGAAACCTTCTTACTTTCCCCTAGAGCTTTGTAATTTGGTTTCCTTGCAACGCTATACCAAGGCTTTATCCAATCTCCAAAGGGCTTCACTAGTGGAGAAGTCTCGGCAGAAACCCCAGGAGCGAATGTCAACTTTGCGTGATGTGAGTTCTGCCCTCCACATGATATCAATTATTCAAATACTAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

401

Amino Acids

46.01

Weight (kDa)

9.29

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 46 - 163 3.3e-18 N-terminal domain of argonaute
ArgoL1 PF08699 175 - 236 5.8e-11 Argonaute linker 1 domain
PAZ PF02170 241 - 368 1.8e-27 PAZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 357
AccII CGCG 1 cut(s) 972
AclWI GGATC 2 cut(s) 45, 54
AcsI RAATTY 4 cut(s) 86, 106, 724, 1198
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 5 cut(s) 77, 345, 371, 381, 836
AfiI CCNNNNNNNGG 1 cut(s) 457
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 6 cut(s) 22, 227, 606, 724, 889, 1190
AhlI ACTAGT 1 cut(s) 1102
AjnI CCWGG 2 cut(s) 709, 1128
AjuI GAANNNNNNNTTGG 2 cut(s) 1003, 1035
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 7 cut(s) 28, 256, 294, 313, 609, 656, 1039
AluI AGCT 7 cut(s) 28, 256, 294, 313, 609, 656, 1039
Alw26I GTCTC 3 cut(s) 521, 806, 1119
AlwI GGATC 2 cut(s) 45, 54
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 2 cut(s) 3, 615
ApeKI GCWGC 3 cut(s) 310, 500, 588
ApoI RAATTY 4 cut(s) 86, 106, 724, 1198
ArsI GACNNNNNNTTYG 2 cut(s) 868, 900
AspS9I GGNCC 1 cut(s) 615
AvaI CYCGRG 1 cut(s) 550
BbvI GCAGC 3 cut(s) 322, 512, 575
BccI CCATC 5 cut(s) 176, 275, 823, 902, 908
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 2 cut(s) 711, 1130
BcoDI GTCTC 3 cut(s) 521, 806, 1119
BcuI ACTAGT 1 cut(s) 1102
BfaI CTAG 3 cut(s) 120, 1034, 1103
BfmI CTRYAG 1 cut(s) 589
BfrI CTTAAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 311, 501, 589
BlsI GCNGC 3 cut(s) 312, 502, 590
BmcAI AGTACT 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 711, 1130
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 711, 1130
BmsI GCATC 3 cut(s) 24, 780, 1002
Bsa29I ATCGAT 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 3 cut(s) 551, 1071, 1128
BsaXI ACNNNNNCTCC 4 cut(s) 564, 594, 1124, 1154
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 351
BseBI CCWGG 2 cut(s) 711, 1130
BseCI ATCGAT 1 cut(s) 49
BseDI CCNNGG 3 cut(s) 551, 1071, 1128
BseGI GGATG 2 cut(s) 355, 795
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 588
BseXI GCAGC 3 cut(s) 322, 512, 575
BseYI CCCAGC 1 cut(s) 948
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 972
BshFI GGCC 2 cut(s) 5, 617
BshVI ATCGAT 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 3 cut(s) 521, 806, 1119
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 2 cut(s) 5, 617
Bso31I GGTCTC 1 cut(s) 806
BsoBI CYCGRG 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 3 cut(s) 46, 50, 924
BspANI GGCC 2 cut(s) 5, 617
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 49
BspFNI CGCG 1 cut(s) 972
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 593
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 45, 54
BspQI GCTCTTC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 806
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 3 cut(s) 551, 1071, 1128
BssMI GATC 3 cut(s) 46, 50, 924
BssT1I CCWWGG 1 cut(s) 1071
Bst2UI CCWGG 2 cut(s) 711, 1130
Bst4CI ACNGT 3 cut(s) 304, 340, 931
Bst6I CTCTTC 2 cut(s) 284, 915
BstAFI CTTAAG 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 4 cut(s) 9, 144, 652, 783
BstF5I GGATG 2 cut(s) 355, 795
BstFNI CGCG 1 cut(s) 972
BstKTI GATC 3 cut(s) 49, 53, 927
BstMAI GTCTC 3 cut(s) 521, 806, 1119
BstMBI GATC 3 cut(s) 46, 50, 924
BstNI CCWGG 2 cut(s) 711, 1130
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 2 cut(s) 709, 1128
BstSFI CTRYAG 1 cut(s) 589
BstUI CGCG 1 cut(s) 972
BstV1I GCAGC 3 cut(s) 322, 512, 575
Bsu15I ATCGAT 1 cut(s) 49
BsuRI GGCC 2 cut(s) 5, 617
BsuTUI ATCGAT 1 cut(s) 49
BtsCI GGATG 2 cut(s) 355, 795
BtsIMutI CAGTG 2 cut(s) 620, 927
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 615
ClaI ATCGAT 1 cut(s) 49
CsiI ACCWGGT 1 cut(s) 709
Csp6I GTAC 5 cut(s) 76, 344, 370, 380, 835
CviAII CATG 4 cut(s) 169, 733, 961, 1174
CviQI GTAC 5 cut(s) 76, 344, 370, 380, 835
DdeI CTNAG 4 cut(s) 9, 144, 652, 783
DpnI GATC 3 cut(s) 48, 52, 926
DpnII GATC 3 cut(s) 46, 50, 924
Eam1104I CTCTTC 2 cut(s) 284, 915
EarI CTCTTC 2 cut(s) 284, 915
Eco130I CCWWGG 1 cut(s) 1071
Eco31I GGTCTC 1 cut(s) 806
Eco32I GATATC 1 cut(s) 1179
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 709, 1128
EcoRV GATATC 1 cut(s) 1179
EcoT14I CCWWGG 1 cut(s) 1071
ErhI CCWWGG 1 cut(s) 1071
FaeI CATG 4 cut(s) 172, 736, 964, 1177
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 4 cut(s) 168, 732, 960, 1173
Fnu4HI GCNGC 3 cut(s) 311, 501, 589
FokI GGATG 2 cut(s) 362, 802
Fsp4HI GCNGC 3 cut(s) 311, 501, 589
FspBI CTAG 3 cut(s) 120, 1034, 1103
GluI GCNGC 3 cut(s) 311, 501, 589
GsaI CCCAGC 1 cut(s) 952
HaeIII GGCC 2 cut(s) 5, 617
Hin1II CATG 4 cut(s) 172, 736, 964, 1177
HincII GTYRAC 3 cut(s) 196, 388, 1143
HindII GTYRAC 3 cut(s) 196, 388, 1143
HindIII AAGCTT 1 cut(s) 607
HinfI GANTC 2 cut(s) 443, 974
Hpy166II GTNNAC 6 cut(s) 78, 196, 300, 388, 690, 1143
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 5 cut(s) 19, 224, 440, 458, 476
Hpy8I GTNNAC 6 cut(s) 78, 196, 300, 388, 690, 1143
HpyAV CCTTC 5 cut(s) 16, 37, 74, 619, 1029
HpyCH4III ACNGT 3 cut(s) 304, 340, 931
HpyCH4IV ACGT 2 cut(s) 214, 878
HpyF3I CTNAG 4 cut(s) 9, 144, 652, 783
HpySE526I ACGT 2 cut(s) 214, 878
Hsp92II CATG 4 cut(s) 172, 736, 964, 1177
Kzo9I GATC 3 cut(s) 46, 50, 924
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 4 cut(s) 25, 253, 318, 1132
Lsp1109I GCAGC 3 cut(s) 322, 512, 575
LweI GCATC 3 cut(s) 24, 780, 1002
MabI ACCWGGT 1 cut(s) 709
MaeI CTAG 3 cut(s) 120, 1034, 1103
MaeII ACGT 2 cut(s) 214, 878
MaeIII GTNAC 1 cut(s) 966
MalI GATC 3 cut(s) 48, 52, 926
MboI GATC 3 cut(s) 46, 50, 924
MboII GAAGA 3 cut(s) 301, 529, 932
MluCI AATT 7 cut(s) 86, 106, 566, 724, 1045, 1182, 1198
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 653, 982
MseI TTAA 2 cut(s) 30, 777
MslI CAYNNNNRTG 1 cut(s) 695
MspCI CTTAAG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 711, 1130
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 2 cut(s) 711, 1130
MvnI CGCG 1 cut(s) 972
NdeII GATC 3 cut(s) 46, 50, 924
NlaIII CATG 4 cut(s) 172, 736, 964, 1177
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 1096
NspI RCATGY 1 cut(s) 964
PciSI GCTCTTC 1 cut(s) 284
PctI GAATGC 1 cut(s) 502
PfeI GAWTC 1 cut(s) 974
PkrI GCNGC 3 cut(s) 312, 502, 590
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 709, 1128
PspFI CCCAGC 1 cut(s) 948
PspGI CCWGG 2 cut(s) 709, 1128
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 615
PstI CTGCAG 1 cut(s) 593
RsaI GTAC 5 cut(s) 77, 345, 371, 381, 836
RsaNI GTAC 5 cut(s) 76, 344, 370, 380, 835
RseI CAYNNNNRTG 1 cut(s) 695
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 30, 777
SatI GCNGC 3 cut(s) 311, 501, 589
Sau3AI GATC 3 cut(s) 46, 50, 924
Sau96I GGNCC 1 cut(s) 615
ScaI AGTACT 1 cut(s) 345
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 711, 1130
SexAI ACCWGGT 1 cut(s) 709
SfaNI GCATC 3 cut(s) 24, 780, 1002
SfcI CTRYAG 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 1102
Sse9I AATT 7 cut(s) 86, 106, 566, 724, 1045, 1182, 1198
SspMI CTAG 3 cut(s) 120, 1034, 1103
StyD4I CCNGG 2 cut(s) 709, 1128
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 3 cut(s) 304, 340, 931
TaiI ACGT 2 cut(s) 217, 881
TaqI TCGA 1 cut(s) 49
TasI AATT 7 cut(s) 86, 106, 566, 724, 1045, 1182, 1198
TatI WGTACW 3 cut(s) 343, 379, 834
TfiI GAWTC 1 cut(s) 974
Tru1I TTAA 2 cut(s) 30, 777
Tru9I TTAA 2 cut(s) 30, 777
TscAI CASTG 2 cut(s) 627, 934
TseI GCWGC 3 cut(s) 310, 500, 588
TspDTI ATGAA 3 cut(s) 550, 590, 951
TspRI CASTG 2 cut(s) 627, 934
Vha464I CTTAAG 1 cut(s) 29
XapI RAATTY 4 cut(s) 86, 106, 724, 1198
XceI RCATGY 1 cut(s) 964
XspI CTAG 3 cut(s) 120, 1034, 1103
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.