Rmu_sc0011701.1_g000026

Argonaute

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011701.1
OG0001623
Physical Location & Seq
Reverse (-)
86315 .. 89096
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011701.1_g000026.1.cds

Sequence Viewer

Length: 978 bp
atgccattgaggagctccagcgctgccatcgctccgatgttgcgtgtgcctcgcaccaccaccagcctagcgaccacgcgaacgaccttcatcaatggtagagcctctggtatgctcgctacctgcgtcattcaacccatcgatatcatcaaggtcaactttgctgctaaaatcccaatgcaagcaatcacgaatgccttgcgaggtcaggactctgaccattttcaggaagcagttagagttcttgacatcattataaggcagaatgcagcaaagcagggttgtctccttgttcggcaatctttcttccataacaacccgaggaacttcatagaattgggaggaggggtgttaggctgcaggggttttcattcaagcttccgggccacgcaaggcggcctatccctgaatatgggaggacacgatggagatggagaagagatcactgtttatgaatactttgcccagcataagcacatgcagttacgcgatttagcagattttccctgcatcaatgttggaaaaccaaagaaaccttcttactttcccctagagctttgtaatttggtttccttgcaacgctataccaaggctttatccaatctccaaagggcttcactagtggagaagtctcggcagaaaccccaggagcgaatgtcaactttgcgtgatcttggcggaatcaactccttgctaatggtggagcattctccttctctacccttggtatccaagtcccccactctgattttagggatggatgtgtcacatggctcacctgggcgttccgatgtgccttctattgcagcggtggtcagttccaggaaatggcctttgatttctcgttaccgagctgcagttcgtactcaatcaccaaaagtagaaatgattgctaatctgttcaagcctgtgtctgataaagaggaccaaggcataatcaagttggctcctatctccctctatactctgccactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

325

Amino Acids

35.72

Weight (kDa)

9.87

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 828
AccII CGCG 2 cut(s) 79, 489
AciI CCGC 3 cut(s) 396, 678, 809
AfaI GTAC 1 cut(s) 865
AfeI AGCGCT 1 cut(s) 22
AfiI CCNNNNNNNGG 3 cut(s) 226, 412, 828
AgsI TTSAA 3 cut(s) 134, 375, 904
AhlI ACTAGT 1 cut(s) 619
AjnI CCWGG 3 cut(s) 645, 778, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 4 cut(s) 15, 378, 556, 854
AluI AGCT 4 cut(s) 15, 378, 556, 854
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 290, 636
Ama87I CYCGRG 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 22
AoxI GGCC 3 cut(s) 384, 397, 830
ApeKI GCWGC 6 cut(s) 23, 164, 269, 357, 806, 854
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 384, 925
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 768, 864
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 6 cut(s) 10, 151, 281, 344, 818, 841
BccI CCATC 5 cut(s) 35, 146, 419, 425, 751
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 3 cut(s) 647, 780, 823
BciVI GTATCC 1 cut(s) 739
BcnI CCSGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 290, 636
BcuI ACTAGT 1 cut(s) 619
BfaI CTAG 3 cut(s) 68, 551, 620
BfmI CTRYAG 2 cut(s) 358, 855
BfoI RGCGCY 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 131
BfuI GTATCC 1 cut(s) 739
BisI GCNGC 7 cut(s) 24, 165, 270, 358, 397, 807, 855
BlsI GCNGC 7 cut(s) 25, 166, 271, 359, 398, 808, 856
Bme1390I CCNGG 4 cut(s) 383, 647, 780, 823
Bme18I GGWCC 1 cut(s) 925
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 384, 925
BmiI GGNNCC 1 cut(s) 948
BmrFI CCNGG 4 cut(s) 383, 647, 780, 823
BmsI GCATC 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 141
BsaJI CCNNGG 6 cut(s) 320, 588, 645, 723, 779, 928
BsaXI ACNNNNNCTCC 4 cut(s) 333, 363, 641, 671
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 412, 828
BseBI CCWGG 3 cut(s) 647, 780, 823
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 6 cut(s) 320, 588, 645, 723, 779, 928
BseGI GGATG 2 cut(s) 762, 766
BseLI CCNNNNNNNGG 3 cut(s) 226, 412, 828
BseRI GAGGAG 2 cut(s) 25, 357
BseXI GCAGC 6 cut(s) 10, 151, 281, 344, 818, 841
BseYI CCCAGC 1 cut(s) 465
Bsh1236I CGCG 2 cut(s) 79, 489
BshFI GGCC 3 cut(s) 386, 399, 832
BshVI ATCGAT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 3 cut(s) 226, 412, 828
BsmAI GTCTC 2 cut(s) 290, 636
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 3 cut(s) 199, 271, 706
BsnI GGCC 3 cut(s) 386, 399, 832
BsoBI CYCGRG 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 441, 670
BspACI CCGC 3 cut(s) 396, 678, 809
BspANI GGCC 3 cut(s) 386, 399, 832
BspDI ATCGAT 1 cut(s) 141
BspFNI CGCG 2 cut(s) 79, 489
BspLI GGNNCC 1 cut(s) 948
BspMAI CTGCAG 2 cut(s) 362, 859
BspMI ACCTGC 1 cut(s) 131
BssECI CCNNGG 6 cut(s) 320, 588, 645, 723, 779, 928
BssMI GATC 2 cut(s) 441, 670
BssT1I CCWWGG 3 cut(s) 588, 723, 928
Bst2UI CCWGG 3 cut(s) 647, 780, 823
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 117, 183
BstF5I GGATG 2 cut(s) 762, 766
BstFNI CGCG 2 cut(s) 79, 489
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 2 cut(s) 444, 673
BstMAI GTCTC 2 cut(s) 290, 636
BstMBI GATC 2 cut(s) 441, 670
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 3 cut(s) 647, 780, 823
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 4 cut(s) 381, 645, 778, 821
BstSFI CTRYAG 2 cut(s) 358, 855
BstUI CGCG 2 cut(s) 79, 489
BstV1I GCAGC 6 cut(s) 10, 151, 281, 344, 818, 841
Bsu15I ATCGAT 1 cut(s) 141
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 3 cut(s) 386, 399, 832
BsuTUI ATCGAT 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 762, 766
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 117, 183
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 384, 925
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 864
CviAII CATG 2 cut(s) 478, 770
CviQI GTAC 1 cut(s) 864
DpnI GATC 2 cut(s) 443, 672
DpnII GATC 2 cut(s) 441, 670
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EciI GGCGGA 1 cut(s) 693
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 3 cut(s) 588, 723, 928
Eco24I GRGCYC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 925
Eco47III AGCGCT 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 645, 778, 821
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 3 cut(s) 588, 723, 928
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 3 cut(s) 588, 723, 928
FaeI CATG 2 cut(s) 481, 773
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 721
FatI CATG 2 cut(s) 477, 769
Fnu4HI GCNGC 7 cut(s) 24, 165, 270, 358, 397, 807, 855
FokI GGATG 2 cut(s) 769, 773
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 7 cut(s) 24, 165, 270, 358, 397, 807, 855
FspBI CTAG 3 cut(s) 68, 551, 620
GlaI GCGC 1 cut(s) 22
GluI GCNGC 7 cut(s) 24, 165, 270, 358, 397, 807, 855
GsaI CCCAGC 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 3 cut(s) 386, 399, 832
HapII CCGG 1 cut(s) 382
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 481, 773
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 2 cut(s) 157, 660
HindII GTYRAC 2 cut(s) 157, 660
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 2 cut(s) 212, 681
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 768, 864
Hpy166II GTNNAC 2 cut(s) 157, 660
Hpy188I TCNGA 5 cut(s) 36, 217, 747, 790, 916
Hpy188III TCNNGA 4 cut(s) 190, 209, 227, 245
Hpy8I GTNNAC 2 cut(s) 157, 660
HpyAV CCTTC 4 cut(s) 97, 546, 723, 807
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4V TGCA 8 cut(s) 181, 269, 360, 481, 510, 577, 806, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 481, 773
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 441, 670
LmnI GCTCC 6 cut(s) 12, 20, 37, 649, 703, 952
Lsp1109I GCAGC 6 cut(s) 10, 151, 281, 344, 818, 841
LweI GCATC 1 cut(s) 519
MaeI CTAG 3 cut(s) 68, 551, 620
MaeIII GTNAC 3 cut(s) 483, 765, 845
MalI GATC 2 cut(s) 443, 672
MboI GATC 2 cut(s) 441, 670
MboII GAAGA 2 cut(s) 298, 449
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 335, 562
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 499
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 4 cut(s) 383, 647, 780, 823
Mva1269I GAATGC 3 cut(s) 199, 271, 706
MvaI CCWGG 3 cut(s) 647, 780, 823
MvnI CGCG 2 cut(s) 79, 489
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 383
NdeII GATC 2 cut(s) 441, 670
NlaIII CATG 2 cut(s) 481, 773
NlaIV GGNNCC 1 cut(s) 948
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 765
NspI RCATGY 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 3 cut(s) 199, 271, 706
PfeI GAWTC 1 cut(s) 681
PflMI CCANNNNNTGG 1 cut(s) 828
PfoI TCCNGGA 1 cut(s) 821
PkrI GCNGC 7 cut(s) 25, 166, 271, 359, 398, 808, 856
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PsiI TTATAA 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 645, 778, 821
PspFI CCCAGC 1 cut(s) 465
PspGI CCWGG 3 cut(s) 645, 778, 821
PspN4I GGNNCC 1 cut(s) 948
PspPI GGNCC 2 cut(s) 384, 925
PstI CTGCAG 2 cut(s) 362, 859
RsaI GTAC 1 cut(s) 865
RsaNI GTAC 1 cut(s) 864
SacI GAGCTC 1 cut(s) 17
SatI GCNGC 7 cut(s) 24, 165, 270, 358, 397, 807, 855
Sau3AI GATC 2 cut(s) 441, 670
Sau96I GGNCC 2 cut(s) 384, 925
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 4 cut(s) 383, 647, 780, 823
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 1 cut(s) 519
SfcI CTRYAG 2 cut(s) 358, 855
SinI GGWCC 1 cut(s) 925
SpeI ACTAGT 1 cut(s) 619
Sse9I AATT 2 cut(s) 335, 562
SsiI CCGC 3 cut(s) 396, 678, 809
SspMI CTAG 3 cut(s) 68, 551, 620
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 381, 645, 778, 821
StyI CCWWGG 3 cut(s) 588, 723, 928
TaaI ACNGT 1 cut(s) 448
TaqI TCGA 1 cut(s) 141
TasI AATT 2 cut(s) 335, 562
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 1 cut(s) 681
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 765
TseI GCWGC 6 cut(s) 23, 164, 269, 357, 806, 854
Tsp45I GTSAC 1 cut(s) 765
TspDTI ATGAA 4 cut(s) 79, 319, 359, 468
TspRI CASTG 1 cut(s) 451
Van91I CCANNNNNTGG 1 cut(s) 828
VpaK11BI GGWCC 1 cut(s) 925
XceI RCATGY 1 cut(s) 481
XspI CTAG 3 cut(s) 68, 551, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.