Rh1DG110500

Argonaute

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001623
Physical Location & Seq
Forward (+)
20342429 .. 20349429
7001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG110500.1

Sequence Viewer

Length: 2529 bp
ATGGGTTCTTCAAATCCCGAAGGAGCCGAACTCCCCCCTCCTCCGCCCATTCCGCCAAATGTTGTCCCAATTGTAACAGGAGAAAAACCTCTTGAACTAATTAACAAACCATCTCCTCCAAAACGTGTTCCCATGAAAAGGCCTGGCATTGGATCTAAAGGTCAAAGGATTTCACTTCTTACCAACCATTTCAAAGTGGGATTGAACATATCTAATGCTGAGTATTACCATTATAGTATTGCCATGCAATATGATGATGGAACCGAAGTTGACGGGAAAGGCATTGGACGTAAGGTTCTTGACAAAGTAAAAGACACATATAGTGTGGAGCTGGAAAACAAGGATTTTGCTTATGATGGAGAGAAGAGCTTGTTTACTGTTGGGCAGCTCCCTCATAAAAAACTTGATTTCACAGTAGTACTGGATGATATATCATCAAGCAGGTCTAGGACGAATGGGGGATCTGGAGGCAGTTATTCCCTAGCAGAGAGTCAGGGCGATAGGAAGAGAGTCAAGCAGTCATTTCAATCCAAAACAATAAAGGTACAGGTCAACTTTGCTGCTAAAATCCCAATGCAAGCAATCGCGAATGCCTTGCGAGGTCAGGACTCTGACCATTTTCAGGAAGCAGTTAGAGTTCTTGACATCATTATAAGGCAGAATGCAGCAAAGCAGGGTTGTCTCCTTGTTCGGCAGTCTTTCTTCCATAACAACCCTAGGAACTTCATAGAGTTGGGAGGAGGGGTGTTAGGCTGCAGGGGTTTCCATTCAAGCTTCCGGGCCACGCAAGGCGGCCTATCCCTGAATATGGATGTGTCCACTACAATGATTGTAAAACCTGGTCCTGTTTTGAATTTCCTCATGGAGAACCAGAATGTCAAAACTCCTTACCAGATTGATTGGAATAAGGCTAAGAGGATGCTAAAAAATCTAAAGGTTGAGACCTATGCTTCCAAGATGGAGTACAAAATCACTGGATTGAGTGATAAACCCTGCAAACAGCAGACGTTCTTTTTGAAATCAAAAGGAGGACAGGATGGAGAAGAGATCACTGTTTATGAGTACTTTGCCCAGCATAAGCACATGCAGTTACGCGATTCAGCAGATTTTCCCTGCATCAATGTTGGAAAACCAAAGAAACCTTCTTACTTTCCTCTTGAGCTTTGTAATTTGGTTTCCTTGCAACGCTATACCAAGGCTTTATCCAATCTCCAAAGGGCTTCACTAGTGGAGAAGTCTCGGCAAAAACCCCAGGAGCGAATGTCAACTTTGCTTGATGCACTGAAGAGTAGTAAATATGAGGCTGACATGATGCTTCATTCTTCTGGAATATCGATTGGTACAGAATTTATGCAGGTTGAAGGCCGTGTTTTGTCAGCCCCAAGGTTGAAAGTGGGAAATGGAGAGGATTTTTCTCCTCGGAATGGGAGATGGAATTTCAACAATAAGAAATTAGTAGAACCTGTAAAACTAGAGCGCTGGGCTGTTGTAAATTTCTCTGCTCGCTGTGACATTCGCTTCCTGGTCAACACTATGATAAAGTGTGGAGACATGAAAGGAATTTCCATCAACCCTCCGTTTAATGTGTTTGAAGAGAGCATTCAGAATAGACGTGAGTCAGCTCTGAGTAGAGTAGAAAAGATGTTTGAATACATTAAGTCCAAACTTCCGGGACCACCTCAGTTTTTGTTGTGCATTCTTCCAGAGAGGAAGAATTCTGACATATATGGTCCATGGAAAAGGAAAAACCTTTCAGACGTTGGGATTGTAACACAGTGTATTGCACCAACTAAAGTGAATGATCAATACATCACAAATGTGCTCCTGAAAATTAATACAAAGCTTGGTGGAATCAACTCCTTGTTAATGGTGGAGCATTGTCCTTCTCTGCCCTTGGTTTCCAAGTCCCCCACTCTGATTTTAGGGATGGATGTGTCACATGGCTCACCTGGACGTTCCGATGTGCCTTCTATTGCAGCGGTGGTCAGTTCCAGGAAATGGCCTTTGATTTCTCGTTACCGAGCTGCAGTTCGTACTCAATCACCAAAAGTAGAAATGATTGCTAATCTGTTCAAGCCTGTGTCTGATAAAGAGGACCAAGGCATAATCAAGGAACTTTTGTTAGACTTTTATACTACTTCAAACAACAGGAAGCCAGAACAGATAATTATTTTCAGGGATGGAGTGAGTGAGTCACAGTTCAACCAAGTCTTGAATGTAGAATTGGAGCAGATTATTGAGGCCTGCAAGTTTCTTGATGAGAGCTGGTGTCCAAAGTTCATGGTTATTATTGCACAAAAGAATCATCATACAAAATTTTTTCAGGCTGGTGGTTCTCCTGACAATGTTCCACCTGGGACTATTATTGACAACAAAGTCTGTCATCCAAAGAACAATGATTTCTACTTATGTTCTCATGCTGGGATGATTGGAACAACTCGTCCTACTCATTATCATGTTCTATATGATGAACTTGGCTTCTCAGCGGATGACTTGCAAGAACTTGTTCATTCTTTATCATATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

842

Amino Acids

94.39

Weight (kDa)

9.25

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 55 - 218 5.6e-26 N-terminal domain of argonaute
ArgoL1 PF08699 230 - 279 2.1e-18 Argonaute linker 1 domain
PAZ PF02170 284 - 409 9.9e-29 PAZ domain
ArgoL2 PF16488 419 - 464 1e-08 Argonaute linker 2 domain
ArgoMid PF16487 472 - 553 1.4e-06 Mid domain of argonaute
Piwi PF02171 563 - 842 1.3e-94 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 653
AasI GACNNNNNNGTC 1 cut(s) 2375
Acc36I ACCTGC 2 cut(s) 432, 1345
AccB7I CCANNNNNTGG 1 cut(s) 1998
AccII CGCG 2 cut(s) 587, 1095
AciI CCGC 5 cut(s) 44, 53, 792, 1979, 2486
AclWI GGATC 2 cut(s) 160, 469
AcsI RAATTY 7 cut(s) 853, 1346, 1435, 1492, 1560, 1714, 2315
AcuI CTGAAG 1 cut(s) 1304
AfaI GTAC 6 cut(s) 420, 546, 965, 1064, 1342, 2035
AfeI AGCGCT 1 cut(s) 1478
AfiI CCNNNNNNNGG 6 cut(s) 138, 149, 622, 808, 1424, 1998
AflIII ACRYGT 1 cut(s) 124
AhlI ACTAGT 1 cut(s) 1225
AjiI CACGTC 1 cut(s) 1613
AjnI CCWGG 7 cut(s) 142, 838, 1251, 1521, 1948, 1991, 2353
AjuI GAANNNNNNNTTGG 4 cut(s) 1126, 1158, 2207, 2239
AleI CACNNNNGTG 1 cut(s) 1817
AloI GAACNNNNNNTCC 4 cut(s) 279, 311, 2425, 2457
AluBI AGCT 9 cut(s) 331, 369, 388, 774, 1162, 1622, 1843, 2024, 2265
AluI AGCT 9 cut(s) 331, 369, 388, 774, 1162, 1622, 1843, 2024, 2265
Alw21I GWGCWC 1 cut(s) 1824
Alw26I GTCTC 4 cut(s) 686, 935, 1242, 1542
AlwI GGATC 2 cut(s) 160, 469
Aor51HI AGCGCT 1 cut(s) 1478
AoxI GGCC 6 cut(s) 140, 780, 793, 1363, 2000, 2241
ApeKI GCWGC 6 cut(s) 385, 560, 665, 753, 1976, 2024
ApoI RAATTY 7 cut(s) 853, 1346, 1435, 1492, 1560, 1714, 2315
ArsI GACNNNNNNTTYG 2 cut(s) 997, 1029
AseI ATTAAT 1 cut(s) 1833
Asp700I GAANNNNTTC 1 cut(s) 2505
AspA2I CCTAGG 1 cut(s) 716
AspLEI GCGC 1 cut(s) 1479
AspS9I GGNCC 5 cut(s) 780, 842, 1673, 1730, 2095
AsuC2I CCSGG 2 cut(s) 779, 1671
AsuHPI GGTGA 2 cut(s) 1938, 2034
AvaII GGWCC 4 cut(s) 842, 1673, 1730, 2095
AvrII CCTAGG 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 1824
BbvI GCAGC 6 cut(s) 397, 547, 677, 740, 1988, 2011
BccI CCATC 9 cut(s) 118, 251, 350, 952, 1031, 1425, 1574, 1921, 2174
BceAI ACGGC 1 cut(s) 1350
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 7 cut(s) 144, 840, 1253, 1523, 1950, 1993, 2355
BclI TGATCA 1 cut(s) 1801
BcnI CCSGG 2 cut(s) 779, 1671
BcoDI GTCTC 4 cut(s) 686, 935, 1242, 1542
BcuI ACTAGT 1 cut(s) 1225
BfaI CTAG 5 cut(s) 447, 482, 717, 1226, 1472
BfmI CTRYAG 2 cut(s) 754, 2025
BfoI RGCGCY 1 cut(s) 1480
BfuAI ACCTGC 2 cut(s) 432, 1345
BisI GCNGC 7 cut(s) 386, 561, 666, 754, 793, 1977, 2025
BlnI CCTAGG 1 cut(s) 716
BlsI GCNGC 7 cut(s) 387, 562, 667, 755, 794, 1978, 2026
BmcAI AGTACT 2 cut(s) 420, 1064
Bme1390I CCNGG 9 cut(s) 144, 779, 840, 1253, 1523, 1671, 1950, 1993, 2355
Bme18I GGWCC 4 cut(s) 842, 1673, 1730, 2095
BmgBI CACGTC 1 cut(s) 1613
BmgT120I GGNCC 5 cut(s) 780, 842, 1673, 1730, 2095
BmiI GGNNCC 3 cut(s) 25, 262, 1674
BmrFI CCNGG 9 cut(s) 144, 779, 840, 1253, 1523, 1671, 1950, 1993, 2355
BmsI GCATC 4 cut(s) 909, 1125, 1267, 1302
BoxI GACNNNNGTC 1 cut(s) 1615
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 1178
BpuMI CCSGG 2 cut(s) 779, 1671
Bsa29I ATCGAT 1 cut(s) 1334
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 9 cut(s) 716, 1194, 1251, 1382, 1418, 1733, 1893, 2098, 2354
BsaXI ACNNNNNCTCC 4 cut(s) 729, 759, 1247, 1277
Bsc4I CCNNNNNNNGG 6 cut(s) 138, 149, 622, 808, 1424, 1998
Bse1I ACTGG 2 cut(s) 426, 979
BseBI CCWGG 7 cut(s) 144, 840, 1253, 1523, 1950, 1993, 2355
BseCI ATCGAT 1 cut(s) 1334
BseDI CCNNGG 9 cut(s) 716, 1194, 1251, 1382, 1418, 1733, 1893, 2098, 2354
BseLI CCNNNNNNNGG 6 cut(s) 138, 149, 622, 808, 1424, 1998
BseMII CTCAG 4 cut(s) 210, 1616, 1694, 2496
BseNI ACTGG 2 cut(s) 426, 979
BseRI GAGGAG 4 cut(s) 30, 105, 753, 1407
BseXI GCAGC 6 cut(s) 397, 547, 677, 740, 1988, 2011
BseYI CCCAGC 3 cut(s) 1071, 1479, 2420
Bsh1236I CGCG 2 cut(s) 587, 1095
BshFI GGCC 6 cut(s) 142, 782, 795, 1365, 2002, 2243
BshVI ATCGAT 1 cut(s) 1334
BsiHKAI GWGCWC 1 cut(s) 1824
BsiSI CCGG 2 cut(s) 778, 1670
BslFI GGGAC 4 cut(s) 50, 1686, 1891, 2371
BslI CCNNNNNNNGG 6 cut(s) 138, 149, 622, 808, 1424, 1998
BsmAI GTCTC 4 cut(s) 686, 935, 1242, 1542
BsmFI GGGAC 4 cut(s) 50, 1686, 1891, 2371
BsmI GAATGC 4 cut(s) 595, 667, 1599, 1695
BsnI GGCC 6 cut(s) 142, 782, 795, 1365, 2002, 2243
Bso31I GGTCTC 1 cut(s) 935
Bsp1286I GDGCHC 1 cut(s) 1824
Bsp143I GATC 4 cut(s) 152, 461, 1047, 1801
Bsp19I CCATGG 1 cut(s) 1733
Bsp68I TCGCGA 1 cut(s) 587
BspACI CCGC 5 cut(s) 44, 53, 792, 1979, 2486
BspANI GGCC 6 cut(s) 142, 782, 795, 1365, 2002, 2243
BspCNI CTCAG 4 cut(s) 211, 1617, 1693, 2495
BspDI ATCGAT 1 cut(s) 1334
BspFNI CGCG 2 cut(s) 587, 1095
BspLI GGNNCC 3 cut(s) 25, 262, 1674
BspMAI CTGCAG 2 cut(s) 758, 2029
BspMI ACCTGC 2 cut(s) 432, 1345
BspPI GGATC 2 cut(s) 160, 469
BspQI GCTCTTC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 935
BsrI ACTGG 2 cut(s) 426, 979
BssECI CCNNGG 9 cut(s) 716, 1194, 1251, 1382, 1418, 1733, 1893, 2098, 2354
BssMI GATC 4 cut(s) 152, 461, 1047, 1801
BssT1I CCWWGG 6 cut(s) 716, 1194, 1382, 1733, 1893, 2098
Bst2UI CCWGG 7 cut(s) 144, 840, 1253, 1523, 1950, 1993, 2355
Bst4CI ACNGT 5 cut(s) 379, 415, 1054, 1776, 2199
Bst6I CTCTTC 5 cut(s) 359, 500, 1038, 1280, 1587
BstC8I GCNNGC 3 cut(s) 579, 1504, 2245
BstDEI CTNAG 5 cut(s) 219, 912, 1625, 1680, 2482
BstDSI CCRYGG 1 cut(s) 1733
BstFNI CGCG 2 cut(s) 587, 1095
BstH2I RGCGCY 1 cut(s) 1480
BstHHI GCGC 1 cut(s) 1479
BstKTI GATC 4 cut(s) 155, 464, 1050, 1804
BstMAI GTCTC 4 cut(s) 686, 935, 1242, 1542
BstMBI GATC 4 cut(s) 152, 461, 1047, 1801
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 7 cut(s) 144, 840, 1253, 1523, 1950, 1993, 2355
BstNSI RCATGY 1 cut(s) 1087
BstPAI GACNNNNGTC 1 cut(s) 1615
BstSCI CCNGG 9 cut(s) 142, 777, 838, 1251, 1521, 1669, 1948, 1991, 2353
BstSFI CTRYAG 2 cut(s) 754, 2025
BstUI CGCG 2 cut(s) 587, 1095
BstV1I GCAGC 6 cut(s) 397, 547, 677, 740, 1988, 2011
BstX2I RGATCY 2 cut(s) 152, 461
BstYI RGATCY 2 cut(s) 152, 461
Bsu15I ATCGAT 1 cut(s) 1334
BsuRI GGCC 6 cut(s) 142, 782, 795, 1365, 2002, 2243
BsuTUI ATCGAT 1 cut(s) 1334
BtgI CCRYGG 1 cut(s) 1733
BtrI CACGTC 1 cut(s) 1613
BtsIMutI CAGTG 4 cut(s) 972, 1050, 1280, 1781
BtuMI TCGCGA 1 cut(s) 587
BveI ACCTGC 2 cut(s) 432, 1345
Cac8I GCNNGC 3 cut(s) 579, 1504, 2245
CfoI GCGC 1 cut(s) 1479
Cfr13I GGNCC 5 cut(s) 780, 842, 1673, 1730, 2095
ClaI ATCGAT 1 cut(s) 1334
CsiI ACCWGGT 1 cut(s) 838
Csp6I GTAC 6 cut(s) 419, 545, 964, 1063, 1341, 2034
CviQI GTAC 6 cut(s) 419, 545, 964, 1063, 1341, 2034
DdeI CTNAG 5 cut(s) 219, 912, 1625, 1680, 2482
DpnI GATC 4 cut(s) 154, 463, 1049, 1803
DpnII GATC 4 cut(s) 152, 461, 1047, 1801
DrdI GACNNNNNNGTC 1 cut(s) 2375
DseDI GACNNNNNNGTC 1 cut(s) 2375
Eam1104I CTCTTC 5 cut(s) 359, 500, 1038, 1280, 1587
EarI CTCTTC 5 cut(s) 359, 500, 1038, 1280, 1587
EciI GGCGGA 2 cut(s) 33, 42
Eco130I CCWWGG 6 cut(s) 716, 1194, 1382, 1733, 1893, 2098
Eco147I AGGCCT 2 cut(s) 142, 2243
Eco31I GGTCTC 1 cut(s) 935
Eco47I GGWCC 4 cut(s) 842, 1673, 1730, 2095
Eco47III AGCGCT 1 cut(s) 1478
Eco57I CTGAAG 1 cut(s) 1304
EcoRI GAATTC 1 cut(s) 1714
EcoRII CCWGG 7 cut(s) 142, 838, 1251, 1521, 1948, 1991, 2353
EcoT14I CCWWGG 6 cut(s) 716, 1194, 1382, 1733, 1893, 2098
ErhI CCWWGG 6 cut(s) 716, 1194, 1382, 1733, 1893, 2098
FaqI GGGAC 4 cut(s) 50, 1686, 1891, 2371
FauNDI CATATG 1 cut(s) 2521
FbaI TGATCA 1 cut(s) 1801
Fnu4HI GCNGC 7 cut(s) 386, 561, 666, 754, 793, 1977, 2025
Fsp4HI GCNGC 7 cut(s) 386, 561, 666, 754, 793, 1977, 2025
FspBI CTAG 5 cut(s) 447, 482, 717, 1226, 1472
GlaI GCGC 1 cut(s) 1478
GluI GCNGC 7 cut(s) 386, 561, 666, 754, 793, 1977, 2025
GsaI CCCAGC 3 cut(s) 1075, 1483, 2424
GsuI CTGGAG 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 1480
HaeIII GGCC 6 cut(s) 142, 782, 795, 1365, 2002, 2243
HapII CCGG 2 cut(s) 778, 1670
HhaI GCGC 1 cut(s) 1479
Hin6I GCGC 1 cut(s) 1477
HinP1I GCGC 1 cut(s) 1477
HincII GTYRAC 4 cut(s) 271, 553, 1266, 1528
HindII GTYRAC 4 cut(s) 271, 553, 1266, 1528
HindIII AAGCTT 2 cut(s) 772, 1841
HinfI GANTC 8 cut(s) 490, 510, 608, 1097, 1616, 1851, 2192, 2302
HpaII CCGG 2 cut(s) 778, 1670
HphI GGTGA 2 cut(s) 1938, 2034
Hpy166II GTNNAC 6 cut(s) 271, 375, 553, 819, 1266, 1528
Hpy188I TCNGA 9 cut(s) 613, 1422, 1605, 1626, 1720, 1756, 1917, 1960, 2086
Hpy8I GTNNAC 6 cut(s) 271, 375, 553, 819, 1266, 1528
HpyAV CCTTC 5 cut(s) 14, 1152, 1355, 1893, 1977
HpyCH4III ACNGT 5 cut(s) 379, 415, 1054, 1776, 2199
HpyCH4IV ACGT 6 cut(s) 124, 289, 1007, 1612, 1758, 1954
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 5 cut(s) 219, 912, 1625, 1680, 2482
HpySE526I ACGT 6 cut(s) 124, 289, 1007, 1612, 1758, 1954
HspAI GCGC 1 cut(s) 1477
Ksp22I TGATCA 1 cut(s) 1801
Kzo9I GATC 4 cut(s) 152, 461, 1047, 1801
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 7 cut(s) 23, 328, 393, 1255, 1827, 1873, 2227
Lsp1109I GCAGC 6 cut(s) 397, 547, 677, 740, 1988, 2011
LweI GCATC 4 cut(s) 909, 1125, 1267, 1302
MabI ACCWGGT 1 cut(s) 838
MaeI CTAG 5 cut(s) 447, 482, 717, 1226, 1472
MaeII ACGT 6 cut(s) 124, 289, 1007, 1612, 1758, 1954
MaeIII GTNAC 7 cut(s) 73, 1089, 1508, 1768, 1935, 2015, 2193
MalI GATC 4 cut(s) 154, 463, 1049, 1803
MboI GATC 4 cut(s) 152, 461, 1047, 1801
MboII GAAGA 9 cut(s) 376, 517, 694, 1055, 1297, 1314, 1604, 1691, 1723
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 2 cut(s) 152, 461
MhlI GDGCHC 1 cut(s) 1824
MlyI GAGTC 5 cut(s) 499, 519, 602, 1625, 2201
MmeI TCCRAC 1 cut(s) 1105
MroXI GAANNNNTTC 1 cut(s) 2505
MseI TTAA 5 cut(s) 102, 1581, 1656, 1833, 1865
MslI CAYNNNNRTG 3 cut(s) 824, 1817, 2454
MspA1I CMGCKG 2 cut(s) 1979, 2486
MspI CCGG 2 cut(s) 778, 1670
MspR9I CCNGG 9 cut(s) 144, 779, 840, 1253, 1523, 1671, 1950, 1993, 2355
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 4 cut(s) 595, 667, 1599, 1695
MvaI CCWGG 7 cut(s) 144, 840, 1253, 1523, 1950, 1993, 2355
MvnI CGCG 2 cut(s) 587, 1095
MwoI GCNNNNNNNGC 1 cut(s) 52
NciI CCSGG 2 cut(s) 779, 1671
NcoI CCATGG 1 cut(s) 1733
NdeI CATATG 1 cut(s) 2521
NdeII GATC 4 cut(s) 152, 461, 1047, 1801
NlaIV GGNNCC 3 cut(s) 25, 262, 1674
NmeAIII GCCGAG 1 cut(s) 1219
NmuCI GTSAC 3 cut(s) 1508, 1935, 2193
NruI TCGCGA 1 cut(s) 587
NspI RCATGY 1 cut(s) 1087
OliI CACNNNNGTG 1 cut(s) 1817
PceI AGGCCT 2 cut(s) 142, 2243
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 4 cut(s) 595, 667, 1599, 1695
PdmI GAANNNNTTC 1 cut(s) 2505
PfeI GAWTC 3 cut(s) 1097, 1851, 2302
PflMI CCANNNNNTGG 1 cut(s) 1998
PfoI TCCNGGA 2 cut(s) 1669, 1991
PkrI GCNGC 7 cut(s) 387, 562, 667, 755, 794, 1978, 2026
PleI GAGTC 5 cut(s) 498, 518, 602, 1624, 2200
PpsI GAGTC 5 cut(s) 498, 518, 602, 1624, 2200
PshAI GACNNNNGTC 1 cut(s) 1615
PshBI ATTAAT 1 cut(s) 1833
PsiI TTATAA 1 cut(s) 653
Psp6I CCWGG 7 cut(s) 142, 838, 1251, 1521, 1948, 1991, 2353
PspFI CCCAGC 3 cut(s) 1071, 1479, 2420
PspGI CCWGG 7 cut(s) 142, 838, 1251, 1521, 1948, 1991, 2353
PspN4I GGNNCC 3 cut(s) 25, 262, 1674
PspPI GGNCC 5 cut(s) 780, 842, 1673, 1730, 2095
PstI CTGCAG 2 cut(s) 758, 2029
PsuI RGATCY 2 cut(s) 152, 461
RruI TCGCGA 1 cut(s) 587
RsaI GTAC 6 cut(s) 420, 546, 965, 1064, 1342, 2035
RsaNI GTAC 6 cut(s) 419, 545, 964, 1063, 1341, 2034
RseI CAYNNNNRTG 3 cut(s) 824, 1817, 2454
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 5 cut(s) 102, 1581, 1656, 1833, 1865
SatI GCNGC 7 cut(s) 386, 561, 666, 754, 793, 1977, 2025
Sau3AI GATC 4 cut(s) 152, 461, 1047, 1801
Sau96I GGNCC 5 cut(s) 780, 842, 1673, 1730, 2095
ScaI AGTACT 2 cut(s) 420, 1064
SchI GAGTC 5 cut(s) 499, 519, 602, 1625, 2201
ScrFI CCNGG 9 cut(s) 144, 779, 840, 1253, 1523, 1671, 1950, 1993, 2355
SduI GDGCHC 1 cut(s) 1824
SexAI ACCWGGT 1 cut(s) 838
SfaNI GCATC 4 cut(s) 909, 1125, 1267, 1302
SfcI CTRYAG 2 cut(s) 754, 2025
SinI GGWCC 4 cut(s) 842, 1673, 1730, 2095
SmiMI CAYNNNNRTG 3 cut(s) 824, 1817, 2454
SmlI CTYRAG 1 cut(s) 1157
SmoI CTYRAG 1 cut(s) 1157
SpeI ACTAGT 1 cut(s) 1225
SseBI AGGCCT 2 cut(s) 142, 2243
SsiI CCGC 5 cut(s) 44, 53, 792, 1979, 2486
SspMI CTAG 5 cut(s) 447, 482, 717, 1226, 1472
StuI AGGCCT 2 cut(s) 142, 2243
StyD4I CCNGG 9 cut(s) 142, 777, 838, 1251, 1521, 1669, 1948, 1991, 2353
StyI CCWWGG 6 cut(s) 716, 1194, 1382, 1733, 1893, 2098
TaaI ACNGT 5 cut(s) 379, 415, 1054, 1776, 2199
TaiI ACGT 6 cut(s) 127, 292, 1010, 1615, 1761, 1957
TaqI TCGA 1 cut(s) 1334
TatI WGTACW 3 cut(s) 418, 963, 1062
TauI GCSGC 1 cut(s) 795
TfiI GAWTC 3 cut(s) 1097, 1851, 2302
Tru1I TTAA 5 cut(s) 102, 1581, 1656, 1833, 1865
Tru9I TTAA 5 cut(s) 102, 1581, 1656, 1833, 1865
TscAI CASTG 4 cut(s) 979, 1057, 1287, 1781
TseFI GTSAC 3 cut(s) 1508, 1935, 2193
TseI GCWGC 6 cut(s) 385, 560, 665, 753, 1976, 2024
Tsp45I GTSAC 3 cut(s) 1508, 1935, 2193
TspDTI ATGAA 7 cut(s) 149, 715, 1307, 1568, 2269, 2484, 2498
TspGWI ACGGA 1 cut(s) 1566
TspRI CASTG 4 cut(s) 979, 1057, 1287, 1781
Van91I CCANNNNNTGG 1 cut(s) 1998
VpaK11BI GGWCC 4 cut(s) 842, 1673, 1730, 2095
VspI ATTAAT 1 cut(s) 1833
XapI RAATTY 7 cut(s) 853, 1346, 1435, 1492, 1560, 1714, 2315
XceI RCATGY 1 cut(s) 1087
XmaJI CCTAGG 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 2505
XspI CTAG 5 cut(s) 447, 482, 717, 1226, 1472
ZrmI AGTACT 2 cut(s) 420, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.