Argonaute
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G21030 AT5G21030 AT5G21150 |
| fragaria_vesca | FvH4_4g13080 FvH4_7g04840 FvH4_7g04840 |
| malus_domestica | MD07G1052200.v1.1 MD07G1052400.v1.1 |
| prunus_persica | Prupe.2G056600_v2.0.a1 Prupe.2G056700_v2.0.a1 |
| pyrus_communis | pycom07g04070 pycom07g04080 |
| rosa_chinensis | RchiOBHm_Chr1g0322921 RchiOBHm_Chr1g0330301 RchiOBHm_Chr4g0412801 RchiOBHm_Chr7g0206231 |
| rosa_laevigata | RLG00000008257 RLG00000029812 |
| rosa_multiflora | Rmu_sc0002224.1_g000009 Rmu_sc0011701.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00319970 Rroxscaffold_5G00347500 Rroxscaffold_5G00357050 Rroxscaffold_7G00201260 Rroxscaffold_7G00201270 |
| rosa_rugosa | Rorug01G0088700 Rorug01G0088800 Rorug02G0651800 Rorug04G0117000 Rorug06G0108000 Rorug07G0164100 |
| rosa_samantha | Rh1AG106600 Rh1BG084900 Rh1BG159000 Rh1CG102600 Rh1DG110500 Rh1DG112200 Rh1DG189800 Rh3CG350500 Rh4AG175600 Rh4BG175500 Rh4CG186800 Rh4DG172500 Rh7DG234200 |
| rosa_wichuraiana | Rw0G011280 Rw1G008420 Rw1G008560 Rw4G014740 Rw7G030700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 452 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1074 |
| AciI | CCGC | 1 cut(s) | 1055 |
| AclWI | GGATC | 1 cut(s) | 268 |
| AfaI | GTAC | 4 cut(s) | 225, 345, 599, 1111 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 421, 490, 1074 |
| AgsI | TTSAA | 3 cut(s) | 107, 326, 1150 |
| AhlI | ACTAGT | 1 cut(s) | 865 |
| AjnI | CCWGG | 3 cut(s) | 891, 1024, 1067 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 766, 798 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 84, 116 |
| AluBI | AGCT | 5 cut(s) | 136, 174, 193, 802, 1100 |
| AluI | AGCT | 5 cut(s) | 136, 174, 193, 802, 1100 |
| Alw26I | GTCTC | 3 cut(s) | 485, 569, 882 |
| AlwI | GGATC | 1 cut(s) | 268 |
| Ama87I | CYCGRG | 1 cut(s) | 514 |
| AoxI | GGCC | 1 cut(s) | 1076 |
| ApeKI | GCWGC | 5 cut(s) | 190, 359, 464, 1052, 1100 |
| AspS9I | GGNCC | 1 cut(s) | 1171 |
| AsuHPI | GGTGA | 2 cut(s) | 1014, 1110 |
| AvaI | CYCGRG | 1 cut(s) | 514 |
| AvaII | GGWCC | 1 cut(s) | 1171 |
| BbvI | GCAGC | 5 cut(s) | 202, 346, 476, 1064, 1087 |
| BccI | CCATC | 6 cut(s) | 56, 155, 586, 665, 671, 997 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 376, 410 |
| BciT130I | CCWGG | 3 cut(s) | 893, 1026, 1069 |
| BciVI | GTATCC | 2 cut(s) | 546, 985 |
| BcoDI | GTCTC | 3 cut(s) | 485, 569, 882 |
| BcuI | ACTAGT | 1 cut(s) | 865 |
| BfaI | CTAG | 3 cut(s) | 281, 797, 866 |
| BfmI | CTRYAG | 1 cut(s) | 1101 |
| BfuI | GTATCC | 2 cut(s) | 546, 985 |
| BisI | GCNGC | 5 cut(s) | 191, 360, 465, 1053, 1101 |
| BlsI | GCNGC | 5 cut(s) | 192, 361, 466, 1054, 1102 |
| BmcAI | AGTACT | 1 cut(s) | 225 |
| Bme1390I | CCNGG | 3 cut(s) | 893, 1026, 1069 |
| Bme18I | GGWCC | 1 cut(s) | 1171 |
| BmeT110I | CYCGRG | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 1 cut(s) | 1171 |
| BmiI | GGNNCC | 2 cut(s) | 67, 1194 |
| BmrFI | CCNGG | 3 cut(s) | 893, 1026, 1069 |
| BsaI | GGTCTC | 1 cut(s) | 569 |
| BsaJI | CCNNGG | 6 cut(s) | 515, 834, 891, 969, 1025, 1174 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 887, 917 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 421, 490, 1074 |
| Bse1I | ACTGG | 2 cut(s) | 231, 613 |
| BseBI | CCWGG | 3 cut(s) | 893, 1026, 1069 |
| BseDI | CCNNGG | 6 cut(s) | 515, 834, 891, 969, 1025, 1174 |
| BseGI | GGATG | 3 cut(s) | 235, 1008, 1012 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 421, 490, 1074 |
| BseNI | ACTGG | 2 cut(s) | 231, 613 |
| BseRI | GAGGAG | 2 cut(s) | 21, 552 |
| BseXI | GCAGC | 5 cut(s) | 202, 346, 476, 1064, 1087 |
| BseYI | CCCAGC | 1 cut(s) | 711 |
| BshFI | GGCC | 1 cut(s) | 1078 |
| BsiHKCI | CYCGRG | 1 cut(s) | 514 |
| BslFI | GGGAC | 1 cut(s) | 967 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 421, 490, 1074 |
| BsmAI | GTCTC | 3 cut(s) | 485, 569, 882 |
| BsmFI | GGGAC | 1 cut(s) | 967 |
| BsmI | GAATGC | 3 cut(s) | 394, 466, 952 |
| BsnI | GGCC | 1 cut(s) | 1078 |
| Bso31I | GGTCTC | 1 cut(s) | 569 |
| BsoBI | CYCGRG | 1 cut(s) | 514 |
| Bsp143I | GATC | 3 cut(s) | 260, 687, 916 |
| BspACI | CCGC | 1 cut(s) | 1055 |
| BspANI | GGCC | 1 cut(s) | 1078 |
| BspLI | GGNNCC | 2 cut(s) | 67, 1194 |
| BspMAI | CTGCAG | 1 cut(s) | 1105 |
| BspPI | GGATC | 1 cut(s) | 268 |
| BspQI | GCTCTTC | 1 cut(s) | 164 |
| BspTNI | GGTCTC | 1 cut(s) | 569 |
| BsrI | ACTGG | 2 cut(s) | 231, 613 |
| BssECI | CCNNGG | 6 cut(s) | 515, 834, 891, 969, 1025, 1174 |
| BssMI | GATC | 3 cut(s) | 260, 687, 916 |
| BssT1I | CCWWGG | 3 cut(s) | 834, 969, 1174 |
| Bst2UI | CCWGG | 3 cut(s) | 893, 1026, 1069 |
| Bst4CI | ACNGT | 3 cut(s) | 184, 220, 694 |
| Bst6I | CTCTTC | 4 cut(s) | 164, 279, 299, 678 |
| BstC8I | GCNNGC | 1 cut(s) | 378 |
| BstDEI | CTNAG | 1 cut(s) | 546 |
| BstEII | GGTNACC | 1 cut(s) | 23 |
| BstF5I | GGATG | 3 cut(s) | 235, 1008, 1012 |
| BstKTI | GATC | 3 cut(s) | 263, 690, 919 |
| BstMAI | GTCTC | 3 cut(s) | 485, 569, 882 |
| BstMBI | GATC | 3 cut(s) | 260, 687, 916 |
| BstNI | CCWGG | 3 cut(s) | 893, 1026, 1069 |
| BstNSI | RCATGY | 1 cut(s) | 727 |
| BstPI | GGTNACC | 1 cut(s) | 23 |
| BstSCI | CCNGG | 3 cut(s) | 891, 1024, 1067 |
| BstSFI | CTRYAG | 1 cut(s) | 1101 |
| BstV1I | GCAGC | 5 cut(s) | 202, 346, 476, 1064, 1087 |
| BstX2I | RGATCY | 1 cut(s) | 260 |
| BstYI | RGATCY | 1 cut(s) | 260 |
| BsuI | GTATCC | 2 cut(s) | 546, 985 |
| BsuRI | GGCC | 1 cut(s) | 1078 |
| BtsCI | GGATG | 3 cut(s) | 235, 1008, 1012 |
| BtsIMutI | CAGTG | 2 cut(s) | 606, 690 |
| Cac8I | GCNNGC | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 1 cut(s) | 1171 |
| Csp6I | GTAC | 4 cut(s) | 224, 344, 598, 1110 |
| CviAII | CATG | 3 cut(s) | 49, 724, 1016 |
| CviQI | GTAC | 4 cut(s) | 224, 344, 598, 1110 |
| DdeI | CTNAG | 1 cut(s) | 546 |
| DpnI | GATC | 3 cut(s) | 262, 689, 918 |
| DpnII | GATC | 3 cut(s) | 260, 687, 916 |
| DraI | TTTAAA | 1 cut(s) | 652 |
| Eam1104I | CTCTTC | 4 cut(s) | 164, 279, 299, 678 |
| EarI | CTCTTC | 4 cut(s) | 164, 279, 299, 678 |
| Eco130I | CCWWGG | 3 cut(s) | 834, 969, 1174 |
| Eco31I | GGTCTC | 1 cut(s) | 569 |
| Eco47I | GGWCC | 1 cut(s) | 1171 |
| Eco88I | CYCGRG | 1 cut(s) | 514 |
| Eco91I | GGTNACC | 1 cut(s) | 23 |
| EcoO65I | GGTNACC | 1 cut(s) | 23 |
| EcoRII | CCWGG | 3 cut(s) | 891, 1024, 1067 |
| EcoT14I | CCWWGG | 3 cut(s) | 834, 969, 1174 |
| ErhI | CCWWGG | 3 cut(s) | 834, 969, 1174 |
| FaeI | CATG | 3 cut(s) | 52, 727, 1019 |
| FaqI | GGGAC | 1 cut(s) | 967 |
| FatI | CATG | 3 cut(s) | 48, 723, 1015 |
| Fnu4HI | GCNGC | 5 cut(s) | 191, 360, 465, 1053, 1101 |
| FokI | GGATG | 3 cut(s) | 242, 1015, 1019 |
| Fsp4HI | GCNGC | 5 cut(s) | 191, 360, 465, 1053, 1101 |
| FspBI | CTAG | 3 cut(s) | 281, 797, 866 |
| GluI | GCNGC | 5 cut(s) | 191, 360, 465, 1053, 1101 |
| GsaI | CCCAGC | 1 cut(s) | 715 |
| HaeIII | GGCC | 1 cut(s) | 1078 |
| Hin1II | CATG | 3 cut(s) | 52, 727, 1019 |
| HincII | GTYRAC | 3 cut(s) | 76, 352, 906 |
| HindII | GTYRAC | 3 cut(s) | 76, 352, 906 |
| HinfI | GANTC | 5 cut(s) | 289, 309, 407, 494, 737 |
| HphI | GGTGA | 2 cut(s) | 1014, 1110 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 180, 352, 906 |
| Hpy188I | TCNGA | 4 cut(s) | 412, 993, 1036, 1162 |
| Hpy188III | TCNNGA | 6 cut(s) | 104, 385, 404, 422, 440, 491 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 180, 352, 906 |
| HpyAV | CCTTC | 3 cut(s) | 792, 969, 1053 |
| HpyCH4III | ACNGT | 3 cut(s) | 184, 220, 694 |
| HpyCH4IV | ACGT | 3 cut(s) | 38, 94, 641 |
| HpyCH4V | TGCA | 8 cut(s) | 52, 376, 464, 630, 727, 823, 1052, 1103 |
| HpyF3I | CTNAG | 1 cut(s) | 546 |
| HpySE526I | ACGT | 3 cut(s) | 38, 94, 641 |
| Hsp92II | CATG | 3 cut(s) | 52, 727, 1019 |
| Kzo9I | GATC | 3 cut(s) | 260, 687, 916 |
| LguI | GCTCTTC | 1 cut(s) | 164 |
| LmnI | GCTCC | 5 cut(s) | 133, 198, 895, 949, 1198 |
| Lsp1109I | GCAGC | 5 cut(s) | 202, 346, 476, 1064, 1087 |
| MaeI | CTAG | 3 cut(s) | 281, 797, 866 |
| MaeII | ACGT | 3 cut(s) | 38, 94, 641 |
| MaeIII | GTNAC | 5 cut(s) | 23, 272, 729, 1011, 1091 |
| MalI | GATC | 3 cut(s) | 262, 689, 918 |
| MboI | GATC | 3 cut(s) | 260, 687, 916 |
| MboII | GAAGA | 5 cut(s) | 181, 296, 316, 493, 695 |
| MflI | RGATCY | 1 cut(s) | 260 |
| MluCI | AATT | 3 cut(s) | 429, 530, 808 |
| MlyI | GAGTC | 3 cut(s) | 298, 318, 401 |
| MmeI | TCCRAC | 1 cut(s) | 745 |
| MseI | TTAA | 1 cut(s) | 651 |
| MspA1I | CMGCKG | 1 cut(s) | 1055 |
| MspR9I | CCNGG | 3 cut(s) | 893, 1026, 1069 |
| Mva1269I | GAATGC | 3 cut(s) | 394, 466, 952 |
| MvaI | CCWGG | 3 cut(s) | 893, 1026, 1069 |
| NdeII | GATC | 3 cut(s) | 260, 687, 916 |
| NlaIII | CATG | 3 cut(s) | 52, 727, 1019 |
| NlaIV | GGNNCC | 2 cut(s) | 67, 1194 |
| NmeAIII | GCCGAG | 1 cut(s) | 859 |
| NmuCI | GTSAC | 1 cut(s) | 1011 |
| NspI | RCATGY | 1 cut(s) | 727 |
| PciSI | GCTCTTC | 1 cut(s) | 164 |
| PctI | GAATGC | 3 cut(s) | 394, 466, 952 |
| PfeI | GAWTC | 2 cut(s) | 494, 737 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1074 |
| PfoI | TCCNGGA | 1 cut(s) | 1067 |
| PkrI | GCNGC | 5 cut(s) | 192, 361, 466, 1054, 1102 |
| PleI | GAGTC | 3 cut(s) | 297, 317, 401 |
| PpsI | GAGTC | 3 cut(s) | 297, 317, 401 |
| PsiI | TTATAA | 1 cut(s) | 452 |
| Psp6I | CCWGG | 3 cut(s) | 891, 1024, 1067 |
| PspEI | GGTNACC | 1 cut(s) | 23 |
| PspFI | CCCAGC | 1 cut(s) | 711 |
| PspGI | CCWGG | 3 cut(s) | 891, 1024, 1067 |
| PspN4I | GGNNCC | 2 cut(s) | 67, 1194 |
| PspPI | GGNCC | 1 cut(s) | 1171 |
| PstI | CTGCAG | 1 cut(s) | 1105 |
| PsuI | RGATCY | 1 cut(s) | 260 |
| RsaI | GTAC | 4 cut(s) | 225, 345, 599, 1111 |
| RsaNI | GTAC | 4 cut(s) | 224, 344, 598, 1110 |
| SapI | GCTCTTC | 1 cut(s) | 164 |
| SaqAI | TTAA | 1 cut(s) | 651 |
| SatI | GCNGC | 5 cut(s) | 191, 360, 465, 1053, 1101 |
| Sau3AI | GATC | 3 cut(s) | 260, 687, 916 |
| Sau96I | GGNCC | 1 cut(s) | 1171 |
| ScaI | AGTACT | 1 cut(s) | 225 |
| SchI | GAGTC | 3 cut(s) | 298, 318, 401 |
| ScrFI | CCNGG | 3 cut(s) | 893, 1026, 1069 |
| SfcI | CTRYAG | 1 cut(s) | 1101 |
| SinI | GGWCC | 1 cut(s) | 1171 |
| SpeI | ACTAGT | 1 cut(s) | 865 |
| Sse9I | AATT | 3 cut(s) | 429, 530, 808 |
| SsiI | CCGC | 1 cut(s) | 1055 |
| SspMI | CTAG | 3 cut(s) | 281, 797, 866 |
| StyD4I | CCNGG | 3 cut(s) | 891, 1024, 1067 |
| StyI | CCWWGG | 3 cut(s) | 834, 969, 1174 |
| TaaI | ACNGT | 3 cut(s) | 184, 220, 694 |
| TaiI | ACGT | 3 cut(s) | 41, 97, 644 |
| TasI | AATT | 3 cut(s) | 429, 530, 808 |
| TatI | WGTACW | 2 cut(s) | 223, 597 |
| TfiI | GAWTC | 2 cut(s) | 494, 737 |
| Tru1I | TTAA | 1 cut(s) | 651 |
| Tru9I | TTAA | 1 cut(s) | 651 |
| TscAI | CASTG | 2 cut(s) | 613, 697 |
| TseFI | GTSAC | 1 cut(s) | 1011 |
| TseI | GCWGC | 5 cut(s) | 190, 359, 464, 1052, 1100 |
| Tsp45I | GTSAC | 1 cut(s) | 1011 |
| TspDTI | ATGAA | 2 cut(s) | 514, 714 |
| TspRI | CASTG | 2 cut(s) | 613, 697 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1074 |
| VpaK11BI | GGWCC | 1 cut(s) | 1171 |
| XceI | RCATGY | 1 cut(s) | 727 |
| XspI | CTAG | 3 cut(s) | 281, 797, 866 |
| ZrmI | AGTACT | 1 cut(s) | 225 |