Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00490

Orthogroup ID

OG0001623

Physical Location & Seq

Genomic Coordinates Forward (+)

3712 .. 5851

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATGTTACAGATTGCCATGCAACATGATGATGGAACCGAAGTTGACGGGAAAGGCATTGGACGTAAGGTTCTTGAAAAAGTAAAAGACACATATAGTGTGGAGCTGGAAAACAAGGATTTTGCTTATGATGGAGAGAAGAGCTTGTTTACTGTTGGGCAGCTCCCTCATAAAAAACTTGATTTCACAATAGTACTGGATGACATATCATCAAGCAGGTCTAGGACGAATGGGGGATCTGGGGGCAGTTACTCCCTAGAAGAGAGTCAGGGCGATAGGAAGAGAGTCAAGCAGTCATTTCAATCCAAAACAATAAAGGTACAGGTCAACTTTGCTGCTAAAATCCCAATGAAAGCAATCACGAATGCCTTGCGAGGTCTGGACTCTGACCATTTTCAGGAAGCAGTTACAGTTCTTGACATCATTATAAGGCAGAATGCAGCAAAGCAGGGTTGTCTCCTTGTTCGGCAATCTTTCTTCCATAACAACCAGAGGAACTTCATAGAATTGAGAGGAGGGGTGTTAGGCTGTAGGGGTTTTCATTCAAGCTTCCGGGCCAAGCAAGGCGGCCTATCCCTGAATATGGGTTACTTCATTTTATCTACTGTCAGAGTAAACTGCTATGTCTTTTGCAATGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

214

Amino Acids

23.82

Weight (kDa)

9.28

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	14 - 143	7.1e-18	N-terminal domain of argonaute
ArgoL1	PF08699	155 - 195	7.9e-12	Argonaute linker 1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21030 AT5G21030 AT5G21150
fragaria_vesca	FvH4_4g13080 FvH4_7g04840 FvH4_7g04840
malus_domestica	MD07G1052200.v1.1 MD07G1052400.v1.1
prunus_persica	Prupe.2G056600_v2.0.a1 Prupe.2G056700_v2.0.a1
pyrus_communis	pycom07g04070 pycom07g04080
rosa_chinensis	RchiOBHm_Chr1g0322921 RchiOBHm_Chr1g0330301 RchiOBHm_Chr4g0412801 RchiOBHm_Chr7g0206231
rosa_laevigata	RLG00000008257 RLG00000029812
rosa_multiflora	Rmu_sc0002224.1_g000009 Rmu_sc0011701.1_g000026
rosa_roxburghii	Rroxscaffold_4G00319970 Rroxscaffold_5G00347500 Rroxscaffold_5G00357050 Rroxscaffold_7G00201260 Rroxscaffold_7G00201270
rosa_rugosa	Rorug01G0088700 Rorug01G0088800 Rorug02G0651800 Rorug04G0117000 Rorug06G0108000 Rorug07G0164100
rosa_samantha	Rh1AG106600 Rh1BG084900 Rh1BG159000 Rh1CG102600 Rh1DG110500 Rh1DG112200 Rh1DG189800 Rh3CG350500 Rh4AG175600 Rh4BG175500 Rh4CG186800 Rh4DG172500 Rh7DG234200
rosa_wichuraiana	Rw0G011280 Rw1G008420 Rw1G008560 Rw4G014740 Rw7G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	207
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	244
AfaI	GTAC	2 cut(s)	195, 321
AfiI	CCNNNNNNNGG	2 cut(s)	397, 583
AgsI	TTSAA	3 cut(s)	77, 302, 546
AloI	GAACNNNNNNTCC	2 cut(s)	54, 86
AluBI	AGCT	4 cut(s)	106, 144, 163, 549
AluI	AGCT	4 cut(s)	106, 144, 163, 549
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	2 cut(s)	555, 568
ApeKI	GCWGC	3 cut(s)	160, 335, 440
AspS9I	GGNCC	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	554
BbvI	GCAGC	3 cut(s)	172, 322, 452
BccI	CCATC	2 cut(s)	26, 125
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	2 cut(s)	222, 257
BfmI	CTRYAG	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	4 cut(s)	161, 336, 441, 568
BlsI	GCNGC	4 cut(s)	162, 337, 442, 569
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 583
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	640
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	397, 583
BseMI	GCAATG	1 cut(s)	640
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	528
BseXI	GCAGC	3 cut(s)	172, 322, 452
BshFI	GGCC	2 cut(s)	557, 570
BsiSI	CCGG	1 cut(s)	553
BslI	CCNNNNNNNGG	2 cut(s)	397, 583
BsmAI	GTCTC	1 cut(s)	461
BsmI	GAATGC	2 cut(s)	370, 442
BsnI	GGCC	2 cut(s)	557, 570
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	557, 570
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	154, 412, 607
Bst6I	CTCTTC	3 cut(s)	134, 255, 275
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	529
BstV1I	GCAGC	3 cut(s)	172, 322, 452
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	557, 570
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	194, 320
CviAII	CATG	2 cut(s)	19, 26
CviJI	RGCY	7 cut(s)	106, 144, 163, 528, 549, 557, 570
CviKI_1	RGCY	7 cut(s)	106, 144, 163, 528, 549, 557, 570
CviQI	GTAC	2 cut(s)	194, 320
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eam1104I	CTCTTC	3 cut(s)	134, 255, 275
EarI	CTCTTC	3 cut(s)	134, 255, 275
FaeI	CATG	2 cut(s)	22, 29
FatI	CATG	2 cut(s)	18, 25
Fnu4HI	GCNGC	4 cut(s)	161, 336, 441, 568
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	161, 336, 441, 568
FspBI	CTAG	2 cut(s)	222, 257
GluI	GCNGC	4 cut(s)	161, 336, 441, 568
HaeIII	GGCC	2 cut(s)	557, 570
HapII	CCGG	1 cut(s)	553
Hin1II	CATG	2 cut(s)	22, 29
HincII	GTYRAC	2 cut(s)	46, 328
HindII	GTYRAC	2 cut(s)	46, 328
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	3 cut(s)	265, 285, 383
HpaII	CCGG	1 cut(s)	553
Hpy166II	GTNNAC	4 cut(s)	46, 150, 328, 616
Hpy188I	TCNGA	2 cut(s)	388, 611
Hpy188III	TCNNGA	5 cut(s)	74, 361, 380, 398, 416
Hpy8I	GTNNAC	4 cut(s)	46, 150, 328, 616
HpyCH4III	ACNGT	3 cut(s)	154, 412, 607
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	22, 440, 633
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	22, 29
Kzo9I	GATC	1 cut(s)	236
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	103, 168
Lsp1109I	GCAGC	3 cut(s)	172, 322, 452
MaeI	CTAG	2 cut(s)	222, 257
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	4 cut(s)	6, 248, 406, 587
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	4 cut(s)	151, 272, 292, 469
MflI	RGATCY	1 cut(s)	236
MluCI	AATT	1 cut(s)	506
MlyI	GAGTC	3 cut(s)	274, 294, 377
MnlI	CCTC	5 cut(s)	177, 368, 486, 506, 509
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	554
Mva1269I	GAATGC	2 cut(s)	370, 442
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	22, 29
NlaIV	GGNNCC	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	134
PctI	GAATGC	2 cut(s)	370, 442
PkrI	GCNGC	4 cut(s)	162, 337, 442, 569
PleI	GAGTC	3 cut(s)	273, 293, 377
PpsI	GAGTC	3 cut(s)	273, 293, 377
PsiI	TTATAA	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	2 cut(s)	195, 321
RsaNI	GTAC	2 cut(s)	194, 320
RseI	CAYNNNNRTG	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	134
SatI	GCNGC	4 cut(s)	161, 336, 441, 568
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	555
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	3 cut(s)	274, 294, 377
ScrFI	CCNGG	1 cut(s)	554
SfcI	CTRYAG	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	2 cut(s)	222, 257
StyD4I	CCNGG	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	154, 412, 607
TaiI	ACGT	1 cut(s)	67
TasI	AATT	1 cut(s)	506
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	570
TseI	GCWGC	3 cut(s)	160, 335, 440
TspDTI	ATGAA	4 cut(s)	365, 490, 530, 583
XspI	CTAG	2 cut(s)	222, 257
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.