Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002224.1

Orthogroup ID

OG0001623

Physical Location & Seq

Genomic Coordinates Forward (+)

44599 .. 46742

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002224.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atgcaatatgatgatggaaccgaagttgacgagaaaggcattggacgtaaggttcttgaaaaagtaaaagacacatatagtgtggagctggaaaacaaggattttgcttatgatggagagaagagcttgtttactgttgggcagctccctcataaaaaacttgatttcacagtagtactggatgacatatcatcaagcaggtacttatatgtggatcatggtgtatctctgctgcttcctatttgcttctggatattagctcagtggttattttgcacacaggtcaacttttctgctaaaatcccaatgcaagcaatcacaaatgccttgcgaggtcaggactctgaccattttcaagaagcagttagagttcttgacatcattataaggcagaatgcagcaaagcagggttgtctccttgttcggcaatctttcttccataacaacccgaggaacttcatagagttggaaggtggggtgttaggctgcaggggtttccattcaagcttccgggccacgcaaggcggcctatccctgaatatggatgtgtccactacaatgattgtaaaacctggtcctgttttgaatttcctcatggagaaccagaatgtcaaaactccttaccagattgattggattaaggctaagaggatgctaaaaaatctaaaggttcagacctatgcttccaagatggagtacaaaatcattggattgagtgataaaccctgcaaacagcagacgttctttttgaaatcaaaaggaggacatgatggagatggagaagagatcactgtttatgaatactttgcccagcataagcacatgcagttacgcgattcagcagattttccctgcatcaatgttggaaaaccaaagaaaccttcttactttcccctagagctttgcaatttggtttccttgcaacgctataccaaggctttatccaatctccaaagggcttcactagtggagaagtctcggcagaaaccccaggagcgaatgtcaactttgcgtgataatcaactccttgctaatggtgagcattctccttctctgcccttggtatccaagtcccccactctaattttagggatggatgtgtcacatggctcacctgggcgttccgatgtgccttctattgcagcggtggtcagttccaggaaatggcctttgatttctcgttaccgagctgcagttcgtactcaatcaccaaaagtagaaatgattgctaatctgttcaagcctgtgtctgataaagaggaccaaggcataatcaagttggctcctatctccccctatactctgccactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

437

Amino Acids

49.28

Weight (kDa)

9.14

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21030 AT5G21030 AT5G21150
fragaria_vesca	FvH4_4g13080 FvH4_7g04840 FvH4_7g04840
malus_domestica	MD07G1052200.v1.1 MD07G1052400.v1.1
prunus_persica	Prupe.2G056600_v2.0.a1 Prupe.2G056700_v2.0.a1
pyrus_communis	pycom07g04070 pycom07g04080
rosa_chinensis	RchiOBHm_Chr1g0322921 RchiOBHm_Chr1g0330301 RchiOBHm_Chr4g0412801 RchiOBHm_Chr7g0206231
rosa_laevigata	RLG00000008257 RLG00000029812
rosa_multiflora	Rmu_sc0002224.1_g000009 Rmu_sc0011701.1_g000026
rosa_roxburghii	Rroxscaffold_4G00319970 Rroxscaffold_5G00347500 Rroxscaffold_5G00357050 Rroxscaffold_7G00201260 Rroxscaffold_7G00201270
rosa_rugosa	Rorug01G0088700 Rorug01G0088800 Rorug02G0651800 Rorug04G0117000 Rorug06G0108000 Rorug07G0164100
rosa_samantha	Rh1AG106600 Rh1BG084900 Rh1BG159000 Rh1CG102600 Rh1DG110500 Rh1DG112200 Rh1DG189800 Rh3CG350500 Rh4AG175600 Rh4BG175500 Rh4CG186800 Rh4DG172500 Rh7DG234200
rosa_wichuraiana	Rw0G011280 Rw1G008420 Rw1G008560 Rw4G014740 Rw7G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	1164
AccII	CGCG	1 cut(s)	834
AciI	CCGC	2 cut(s)	525, 1145
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	586
AfaI	GTAC	4 cut(s)	177, 203, 698, 1201
AfiI	CCNNNNNNNGG	2 cut(s)	541, 1164
AgsI	TTSAA	6 cut(s)	59, 356, 504, 586, 751, 1240
AhlI	ACTAGT	1 cut(s)	964
AjnI	CCWGG	4 cut(s)	571, 990, 1114, 1157
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	7 cut(s)	88, 126, 145, 260, 507, 901, 1190
AluI	AGCT	7 cut(s)	88, 126, 145, 260, 507, 901, 1190
Alw26I	GTCTC	2 cut(s)	419, 981
AlwI	GGATC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	3 cut(s)	513, 526, 1166
ApeKI	GCWGC	6 cut(s)	142, 232, 398, 486, 1142, 1190
ApoI	RAATTY	1 cut(s)	586
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
AspS9I	GGNCC	3 cut(s)	513, 575, 1261
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	1049, 1104, 1200
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	575, 1261
BbvI	GCAGC	6 cut(s)	154, 219, 410, 473, 1154, 1177
BccI	CCATC	6 cut(s)	8, 107, 685, 764, 770, 1087
BciT130I	CCWGG	4 cut(s)	573, 992, 1116, 1159
BciVI	GTATCC	1 cut(s)	1075
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	419, 981
BcuI	ACTAGT	1 cut(s)	964
BfaI	CTAG	2 cut(s)	896, 965
BfmI	CTRYAG	2 cut(s)	487, 1191
BfuAI	ACCTGC	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	1075
BisI	GCNGC	7 cut(s)	143, 233, 399, 487, 526, 1143, 1191
BlsI	GCNGC	7 cut(s)	144, 234, 400, 488, 527, 1144, 1192
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	5 cut(s)	512, 573, 992, 1116, 1159
Bme18I	GGWCC	2 cut(s)	575, 1261
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	3 cut(s)	513, 575, 1261
BmiI	GGNNCC	2 cut(s)	19, 1284
BmrFI	CCNGG	5 cut(s)	512, 573, 992, 1116, 1159
BmsI	GCATC	2 cut(s)	642, 864
BpuMI	CCSGG	1 cut(s)	512
BsaJI	CCNNGG	6 cut(s)	449, 933, 990, 1059, 1115, 1264
BsaXI	ACNNNNNCTCC	2 cut(s)	986, 1016
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 1164
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	4 cut(s)	573, 992, 1116, 1159
BseDI	CCNNGG	6 cut(s)	449, 933, 990, 1059, 1115, 1264
BseGI	GGATG	5 cut(s)	187, 550, 657, 1098, 1102
BseLI	CCNNNNNNNGG	2 cut(s)	541, 1164
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	6 cut(s)	154, 219, 410, 473, 1154, 1177
BseYI	CCCAGC	1 cut(s)	810
Bsh1236I	CGCG	1 cut(s)	834
BshFI	GGCC	3 cut(s)	515, 528, 1168
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	1057
BslI	CCNNNNNNNGG	2 cut(s)	541, 1164
BsmAI	GTCTC	2 cut(s)	419, 981
BsmFI	GGGAC	1 cut(s)	1057
BsmI	GAATGC	2 cut(s)	400, 1042
BsnI	GGCC	3 cut(s)	515, 528, 1168
BsoBI	CYCGRG	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	214, 786
BspACI	CCGC	2 cut(s)	525, 1145
BspANI	GGCC	3 cut(s)	515, 528, 1168
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	834
BspLI	GGNNCC	2 cut(s)	19, 1284
BspMAI	CTGCAG	2 cut(s)	491, 1195
BspMI	ACCTGC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	222
BspQI	GCTCTTC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	6 cut(s)	449, 933, 990, 1059, 1115, 1264
BssMI	GATC	2 cut(s)	214, 786
BssT1I	CCWWGG	3 cut(s)	933, 1059, 1264
Bst2UI	CCWGG	4 cut(s)	573, 992, 1116, 1159
Bst4CI	ACNGT	3 cut(s)	136, 172, 793
Bst6I	CTCTTC	2 cut(s)	116, 777
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	261, 645
BstF5I	GGATG	5 cut(s)	187, 550, 657, 1098, 1102
BstFNI	CGCG	1 cut(s)	834
BstKTI	GATC	2 cut(s)	217, 789
BstMAI	GTCTC	2 cut(s)	419, 981
BstMBI	GATC	2 cut(s)	214, 786
BstNI	CCWGG	4 cut(s)	573, 992, 1116, 1159
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	5 cut(s)	510, 571, 990, 1114, 1157
BstSFI	CTRYAG	2 cut(s)	487, 1191
BstUI	CGCG	1 cut(s)	834
BstV1I	GCAGC	6 cut(s)	154, 219, 410, 473, 1154, 1177
BsuI	GTATCC	1 cut(s)	1075
BsuRI	GGCC	3 cut(s)	515, 528, 1168
BtsCI	GGATG	5 cut(s)	187, 550, 657, 1098, 1102
BtsIMutI	CAGTG	2 cut(s)	269, 789
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	312
Cfr13I	GGNCC	3 cut(s)	513, 575, 1261
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	4 cut(s)	176, 202, 697, 1200
CviAII	CATG	5 cut(s)	218, 595, 767, 823, 1106
CviQI	GTAC	4 cut(s)	176, 202, 697, 1200
DdeI	CTNAG	2 cut(s)	261, 645
DpnI	GATC	2 cut(s)	216, 788
DpnII	GATC	2 cut(s)	214, 786
Eam1104I	CTCTTC	2 cut(s)	116, 777
EarI	CTCTTC	2 cut(s)	116, 777
Eco130I	CCWWGG	3 cut(s)	933, 1059, 1264
Eco47I	GGWCC	2 cut(s)	575, 1261
Eco88I	CYCGRG	1 cut(s)	448
EcoRII	CCWGG	4 cut(s)	571, 990, 1114, 1157
EcoT14I	CCWWGG	3 cut(s)	933, 1059, 1264
ErhI	CCWWGG	3 cut(s)	933, 1059, 1264
FaeI	CATG	5 cut(s)	221, 598, 770, 826, 1109
FaqI	GGGAC	1 cut(s)	1057
FatI	CATG	5 cut(s)	217, 594, 766, 822, 1105
Fnu4HI	GCNGC	7 cut(s)	143, 233, 399, 487, 526, 1143, 1191
FokI	GGATG	5 cut(s)	194, 557, 664, 1105, 1109
Fsp4HI	GCNGC	7 cut(s)	143, 233, 399, 487, 526, 1143, 1191
FspBI	CTAG	2 cut(s)	896, 965
GluI	GCNGC	7 cut(s)	143, 233, 399, 487, 526, 1143, 1191
GsaI	CCCAGC	1 cut(s)	814
HaeIII	GGCC	3 cut(s)	515, 528, 1168
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	5 cut(s)	221, 598, 770, 826, 1109
HincII	GTYRAC	3 cut(s)	28, 286, 1005
HindII	GTYRAC	3 cut(s)	28, 286, 1005
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	2 cut(s)	341, 836
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	3 cut(s)	1049, 1104, 1200
Hpy166II	GTNNAC	5 cut(s)	28, 132, 286, 552, 1005
Hpy188I	TCNGA	4 cut(s)	346, 675, 1126, 1252
Hpy188III	TCNNGA	5 cut(s)	56, 250, 338, 356, 374
Hpy8I	GTNNAC	5 cut(s)	28, 132, 286, 552, 1005
HpyAV	CCTTC	4 cut(s)	464, 891, 1059, 1143
HpyCH4III	ACNGT	3 cut(s)	136, 172, 793
HpyCH4IV	ACGT	2 cut(s)	46, 740
HpyF3I	CTNAG	2 cut(s)	261, 645
HpySE526I	ACGT	2 cut(s)	46, 740
Hsp92II	CATG	5 cut(s)	221, 598, 770, 826, 1109
Kzo9I	GATC	2 cut(s)	214, 786
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	4 cut(s)	85, 150, 994, 1288
Lsp1109I	GCAGC	6 cut(s)	154, 219, 410, 473, 1154, 1177
LweI	GCATC	2 cut(s)	642, 864
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	2 cut(s)	896, 965
MaeII	ACGT	2 cut(s)	46, 740
MaeIII	GTNAC	3 cut(s)	828, 1101, 1181
MalI	GATC	2 cut(s)	216, 788
MboI	GATC	2 cut(s)	214, 786
MboII	GAAGA	3 cut(s)	133, 427, 794
MluCI	AATT	3 cut(s)	586, 907, 1083
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	447, 844
MnlI	CCTC	7 cut(s)	159, 326, 444, 602, 642, 755, 1252
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	1145
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	5 cut(s)	512, 573, 992, 1116, 1159
Mva1269I	GAATGC	2 cut(s)	400, 1042
MvaI	CCWGG	4 cut(s)	573, 992, 1116, 1159
MvnI	CGCG	1 cut(s)	834
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	2 cut(s)	214, 786
NlaIII	CATG	5 cut(s)	221, 598, 770, 826, 1109
NlaIV	GGNNCC	2 cut(s)	19, 1284
NmeAIII	GCCGAG	1 cut(s)	958
NmuCI	GTSAC	1 cut(s)	1101
NspI	RCATGY	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	2 cut(s)	400, 1042
PfeI	GAWTC	1 cut(s)	836
PflMI	CCANNNNNTGG	1 cut(s)	1164
PfoI	TCCNGGA	1 cut(s)	1157
PkrI	GCNGC	7 cut(s)	144, 234, 400, 488, 527, 1144, 1192
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	386
Psp6I	CCWGG	4 cut(s)	571, 990, 1114, 1157
PspFI	CCCAGC	1 cut(s)	810
PspGI	CCWGG	4 cut(s)	571, 990, 1114, 1157
PspN4I	GGNNCC	2 cut(s)	19, 1284
PspPI	GGNCC	3 cut(s)	513, 575, 1261
PstI	CTGCAG	2 cut(s)	491, 1195
RsaI	GTAC	4 cut(s)	177, 203, 698, 1201
RsaNI	GTAC	4 cut(s)	176, 202, 697, 1200
RseI	CAYNNNNRTG	1 cut(s)	557
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	7 cut(s)	143, 233, 399, 487, 526, 1143, 1191
Sau3AI	GATC	2 cut(s)	214, 786
Sau96I	GGNCC	3 cut(s)	513, 575, 1261
ScaI	AGTACT	1 cut(s)	177
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	5 cut(s)	512, 573, 992, 1116, 1159
SexAI	ACCWGGT	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	642, 864
SfcI	CTRYAG	2 cut(s)	487, 1191
SinI	GGWCC	2 cut(s)	575, 1261
SmiMI	CAYNNNNRTG	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	964
Sse9I	AATT	3 cut(s)	586, 907, 1083
SsiI	CCGC	2 cut(s)	525, 1145
SspMI	CTAG	2 cut(s)	896, 965
StyD4I	CCNGG	5 cut(s)	510, 571, 990, 1114, 1157
StyI	CCWWGG	3 cut(s)	933, 1059, 1264
TaaI	ACNGT	3 cut(s)	136, 172, 793
TaiI	ACGT	2 cut(s)	49, 743
TasI	AATT	3 cut(s)	586, 907, 1083
TatI	WGTACW	2 cut(s)	175, 696
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	836
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	269, 796
TseFI	GTSAC	1 cut(s)	1101
TseI	GCWGC	6 cut(s)	142, 232, 398, 486, 1142, 1190
Tsp45I	GTSAC	1 cut(s)	1101
TspDTI	ATGAA	2 cut(s)	448, 813
TspRI	CASTG	2 cut(s)	269, 796
Van91I	CCANNNNNTGG	1 cut(s)	1164
VpaK11BI	GGWCC	2 cut(s)	575, 1261
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	826
XspI	CTAG	2 cut(s)	896, 965
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.