RchiOBHm_Chr1g0342981

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
34803763 .. 34808192
4430 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56956

Sequence Viewer

Length: 285 bp
ATGAGTTTCTTTGACTTCGGTCATGTGAAGCCTCTTTCCTCCATAAACCCTTTGTTTTGGGATGTAATTTTAACCGATCTACATGTTTCCATTTGTCAGTCCTGCCTGTCAAAGATTCGAAGCCTCGTCTTTGTTGAGATAGCATCTTTTTGGAACTCGGAACTGATTTTGGACATTCCTCCACCGCCAAGCTTCGTGGCTATCACAGTTGTTGGTGTCGAACCCAGAACCGGTACCATATCTTTTGAAGAAAACATGATCACCTCAATATTTCGGTGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.56

Weight (kDa)

4.82

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 1 cut(s) 185
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 233
BclI TGATCA 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 152
BoxI GACNNNNGTC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 118
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 230
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 230
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 76, 258
BspACI CCGC 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 2 cut(s) 76, 258
Bst4CI ACNGT 1 cut(s) 208
BstBI TTCGAA 1 cut(s) 118
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 79, 261
BstMBI GATC 2 cut(s) 76, 258
BstNSI RCATGY 1 cut(s) 86
BstPAI GACNNNNGTC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 230
Csp6I GTAC 1 cut(s) 234
CspAI ACCGGT 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviAII CATG 3 cut(s) 23, 83, 256
CviJI RGCY 4 cut(s) 31, 123, 192, 200
CviKI_1 RGCY 4 cut(s) 31, 123, 192, 200
CviQI GTAC 1 cut(s) 234
DpnI GATC 2 cut(s) 78, 260
DpnII GATC 2 cut(s) 76, 258
FaeI CATG 3 cut(s) 26, 86, 259
FaiI YATR 5 cut(s) 24, 44, 84, 239, 257
FatI CATG 3 cut(s) 22, 82, 255
FbaI TGATCA 1 cut(s) 258
FokI GGATG 1 cut(s) 74
HapII CCGG 1 cut(s) 231
Hin1II CATG 3 cut(s) 26, 86, 259
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 208
Hsp92II CATG 3 cut(s) 26, 86, 259
KpnI GGTACC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 76, 258
LpnPI CCDG 4 cut(s) 115, 119, 238, 244
LweI GCATC 1 cut(s) 152
MalI GATC 2 cut(s) 78, 260
MboI GATC 2 cut(s) 76, 258
MboII GAAGA 1 cut(s) 260
MluCI AATT 1 cut(s) 66
MnlI CCTC 5 cut(s) 42, 49, 134, 189, 274
MseI TTAA 1 cut(s) 71
MspI CCGG 1 cut(s) 231
NdeII GATC 2 cut(s) 76, 258
NlaIII CATG 3 cut(s) 26, 86, 259
NlaIV GGNNCC 1 cut(s) 235
NspI RCATGY 1 cut(s) 86
NspV TTCGAA 1 cut(s) 118
PciI ACATGT 1 cut(s) 82
PfeI GAWTC 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 230
PscI ACATGT 1 cut(s) 82
PshAI GACNNNNGTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 235
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 2 cut(s) 76, 258
SetI ASST 2 cut(s) 194, 266
SfaNI GCATC 1 cut(s) 152
SfuI TTCGAA 1 cut(s) 118
Sse9I AATT 1 cut(s) 66
SsiI CCGC 1 cut(s) 185
SspI AATATT 1 cut(s) 270
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 118, 219
TaqII GACCGA 1 cut(s) 8
TasI AATT 1 cut(s) 66
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
XceI RCATGY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.