Rroxscaffold_7G00195360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001849
Physical Location & Seq
Reverse (-)
37632482 .. 37643008
10527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195360.1

Sequence Viewer

Length: 582 bp
ATGACGAGTTTACCGGTCTTCCAAGGTCGCCATGAACGACGGCGCCGCCGCCAACCCTGTAGCTATACCACCACCATCGCCACTACCTTGAGTTCACCATCACAGAGCTACCGCAATGGGAGTTCGTGGGTCGAGTCCAAGCCGCTATGGCTCGACGAAGGAACTCGTATGTGTGATCGCCTAAATAATACTGATAGAGATCGAATCGGGGATGGAAACCAGCCGTTTCAGTCCGATCTTATTGAACTTGTACTTGGTAAGCCTCTTTCCTCCAGGACCTCTTTGTTTTGGGATGTAATTTTACATAATCTGCATGCTTTCATTTGTCAGTCCTGCTTATCGAAGATTAGAAGCCTCAGCTTTATTGGGATTGCATCTCTTTGGAACCCGGAATTGATTCTAAACACCAGAGTCCAGACACCCTGCAAGTCGTCACCCCACAAGAGGCAGTCACGCTTGAAGCTTAGACATATCTTCTGGGATTTGCAGGTTGCTGGAAGTATTCCAAGAGAACATCGAGGGCTGCGCGAGATTGAAGCGCTTCCTTCGGACAACGGTGCTTGGTTTCAAGCTGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.14

Weight (kDa)

9.88

Isoelectric Point (pI)

71.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 1 cut(s) 528
AciI CCGC 4 cut(s) 46, 49, 112, 143
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 1 cut(s) 252
AfeI AGCGCT 1 cut(s) 540
AfiI CCNNNNNNNGG 1 cut(s) 444
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 4 cut(s) 245, 460, 536, 569
AjnI CCWGG 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 5 cut(s) 63, 108, 360, 463, 572
AluI AGCT 5 cut(s) 63, 108, 360, 463, 572
Aor51HI AGCGCT 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 523
AsiGI ACCGGT 1 cut(s) 13
Asp700I GAANNNNTTC 2 cut(s) 396, 540
AspLEI GCGC 3 cut(s) 45, 528, 541
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 87, 426
AvaII GGWCC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 510
BccI CCATC 3 cut(s) 83, 106, 206
BceAI ACGGC 2 cut(s) 56, 208
BciT130I CCWGG 1 cut(s) 274
BcnI CCSGG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 58
BfoI RGCGCY 2 cut(s) 46, 542
BfuAI ACCTGC 1 cut(s) 478
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 4 cut(s) 46, 49, 143, 524
BlsI GCNGC 4 cut(s) 47, 50, 144, 525
Bme1390I CCNGG 2 cut(s) 274, 389
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 44, 386
BmrFI CCNGG 2 cut(s) 274, 389
BmsI GCATC 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse118I RCCGGY 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 217, 298
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 370
BseXI GCAGC 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 42
BshTI ACCGGT 1 cut(s) 13
BsiSI CCGG 2 cut(s) 14, 389
BslI CCNNNNNNNGG 1 cut(s) 444
Bsp143I GATC 3 cut(s) 175, 199, 235
BspACI CCGC 4 cut(s) 46, 49, 112, 143
BspCNI CTCAG 1 cut(s) 369
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 2 cut(s) 44, 386
BspMI ACCTGC 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 175, 199, 235
BssNI GRCGYC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 557
BstACI GRCGYC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 356, 464
BstF5I GGATG 2 cut(s) 217, 298
BstFNI CGCG 1 cut(s) 528
BstH2I RGCGCY 2 cut(s) 46, 542
BstHHI GCGC 3 cut(s) 45, 528, 541
BstKTI GATC 3 cut(s) 178, 202, 238
BstMBI GATC 3 cut(s) 175, 199, 235
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 272, 387
BstSFI CTRYAG 1 cut(s) 58
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 510
BstV2I GAAGAC 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 217, 298
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 3 cut(s) 45, 528, 541
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 251
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 2 cut(s) 32, 314
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 356, 464
DinI GGCGCC 1 cut(s) 44
DpnI GATC 3 cut(s) 177, 201, 237
DpnII GATC 3 cut(s) 175, 199, 235
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 276
Eco47III AGCGCT 1 cut(s) 540
EcoO109I RGGNCCY 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 22
EgeI GGCGCC 1 cut(s) 44
EheI GGCGCC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 2 cut(s) 35, 317
FaiI YATR 7 cut(s) 33, 66, 148, 170, 306, 315, 471
FatI CATG 2 cut(s) 31, 313
Fnu4HI GCNGC 4 cut(s) 46, 49, 143, 524
FokI GGATG 2 cut(s) 224, 305
Fsp4HI GCNGC 4 cut(s) 46, 49, 143, 524
GlaI GCGC 3 cut(s) 44, 527, 540
GluI GCNGC 4 cut(s) 46, 49, 143, 524
GsuI CTGGAG 1 cut(s) 256
HaeII RGCGCY 2 cut(s) 46, 542
HapII CCGG 2 cut(s) 14, 389
HhaI GCGC 3 cut(s) 45, 528, 541
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 2 cut(s) 35, 317
Hin6I GCGC 3 cut(s) 43, 526, 539
HinP1I GCGC 3 cut(s) 43, 526, 539
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 4 cut(s) 134, 204, 397, 411
HpaII CCGG 2 cut(s) 14, 389
HphI GGTGA 2 cut(s) 87, 426
Hpy166II GTNNAC 2 cut(s) 11, 95
Hpy188I TCNGA 2 cut(s) 235, 550
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 2 cut(s) 11, 95
Hpy99I CGWCG 2 cut(s) 42, 158
HpyAV CCTTC 2 cut(s) 152, 555
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4V TGCA 4 cut(s) 313, 374, 426, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 356, 464
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 2 cut(s) 35, 317
HspAI GCGC 3 cut(s) 43, 526, 539
KasI GGCGCC 1 cut(s) 42
Kzo9I GATC 3 cut(s) 175, 199, 235
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 1 cut(s) 383
MaeIII GTNAC 2 cut(s) 432, 450
MalI GATC 3 cut(s) 177, 201, 237
MboI GATC 3 cut(s) 175, 199, 235
MboII GAAGA 3 cut(s) 10, 355, 466
MluCI AATT 2 cut(s) 297, 392
Mly113I GGCGCC 1 cut(s) 43
MlyI GAGTC 2 cut(s) 143, 420
MnlI CCTC 6 cut(s) 273, 280, 289, 365, 438, 512
MroXI GAANNNNTTC 2 cut(s) 396, 540
MspI CCGG 2 cut(s) 14, 389
MspR9I CCNGG 2 cut(s) 274, 389
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 43
NciI CCSGG 1 cut(s) 389
NdeII GATC 3 cut(s) 175, 199, 235
NlaIII CATG 2 cut(s) 35, 317
NlaIV GGNNCC 2 cut(s) 44, 386
NmuCI GTSAC 2 cut(s) 432, 450
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PdmI GAANNNNTTC 2 cut(s) 396, 540
PfeI GAWTC 2 cut(s) 204, 397
PfoI TCCNGGA 1 cut(s) 272
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 4 cut(s) 47, 50, 144, 525
PleI GAGTC 2 cut(s) 142, 419
PluTI GGCGCC 1 cut(s) 46
PpsI GAGTC 2 cut(s) 142, 419
PpuMI RGGWCCY 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 44, 386
PspPI GGNCC 1 cut(s) 276
PspPPI RGGWCCY 1 cut(s) 276
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SatI GCNGC 4 cut(s) 46, 49, 143, 524
Sau3AI GATC 3 cut(s) 175, 199, 235
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 2 cut(s) 143, 420
ScrFI CCNGG 2 cut(s) 274, 389
SetI ASST 9 cut(s) 28, 65, 89, 110, 281, 362, 465, 492, 574
SfaNI GCATC 1 cut(s) 383
SfcI CTRYAG 1 cut(s) 58
SfoI GGCGCC 1 cut(s) 44
SinI GGWCC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SphI GCATGC 1 cut(s) 317
Sse9I AATT 2 cut(s) 297, 392
SsiI CCGC 4 cut(s) 46, 49, 112, 143
SspDI GGCGCC 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 272, 387
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 557
TaqI TCGA 5 cut(s) 132, 153, 202, 341, 517
TasI AATT 2 cut(s) 297, 392
TatI WGTACW 1 cut(s) 250
TauI GCSGC 3 cut(s) 48, 51, 145
TfiI GAWTC 2 cut(s) 204, 397
TseFI GTSAC 2 cut(s) 432, 450
TseI GCWGC 1 cut(s) 523
Tsp45I GTSAC 2 cut(s) 432, 450
TspDTI ATGAA 2 cut(s) 48, 310
VpaK11BI GGWCC 1 cut(s) 276
XceI RCATGY 1 cut(s) 317
XmnI GAANNNNTTC 2 cut(s) 396, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.