Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001849

Physical Location & Seq

Genomic Coordinates Reverse (-)

65282409 .. 65282894

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCACCCCAAAATCAAACGCTCCCACATCTGGTCCGTCAAATCCACATCCGACCTCAAGAAACATGGACCTCACCGAGCTCATACCCACCGTGGCCATGCTCGCTGGCAACGCGAGATCAATGCGCGCTGGAAGTGCGTGACGGCGAAGCGCACCCAAGAGCCGATGTGGGAGGTGTGATAGTGGTAGAAGATGAAGGAGAGGCAGAAGGTTTTGATCGGAGAATTGGGGCCGAGGATGAGAGCGCGGTCGATGAACTCGGCGAAGCGGTGGATTATGAAGTGGAGAGGTTCAGATTCGTTGACCGGGAAGAGGTGGTAGGAGAGGTCGAGGAGGGGGAGACGGGACCAGAGAGATTTGGATCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.78

Weight (kDa)

4.36

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342981 RchiOBHm_Chr5g0007961
rosa_laevigata	RLG00000001720 RLG00000005133 RLG00000008857 RLG00000014510 RLG00000018028 RLG00000018970 RLG00000019803 RLG00000022600 RLG00000028537 RLG00000028743 RLG00000029184 RLG00000029199 RLG00000033889
rosa_multiflora	Rmu_sc0004928.1_g000017
rosa_roxburghii	Rroxscaffold_7G00195360 Rroxscaffold_7G00215600
rosa_rugosa	Rorug06G0149300
rosa_samantha	Rh1AG012000 Rh1AG077100 Rh2AG113100 Rh2AG582800 Rh2BG087500 Rh2BG116100 Rh2CG089900 Rh2CG118100 Rh2CG169200 Rh2DG117200 Rh2DG573900 Rh3BG109000 Rh3BG295200 Rh3CG110500 Rh3DG104300 Rh3DG192500 Rh3DG268800 Rh4CG042900 Rh5BG251400 Rh5DG259400 Rh6CG266900 Rh7AG157100 Rh7AG476600 Rh7BG447900 Rh7CG094400 Rh7CG495000 Rh7DG461900
rosa_wichuraiana	Rw7G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	3 cut(s)	115, 128, 248
AciI	CCGC	2 cut(s)	248, 269
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	31, 313
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	370
AoxI	GGCC	2 cut(s)	95, 231
AspLEI	GCGC	4 cut(s)	128, 130, 154, 248
AspS9I	GGNCC	4 cut(s)	34, 69, 231, 347
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	3 cut(s)	34, 69, 347
BalI	TGGCCA	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	3 cut(s)	34, 69, 347
BmgT120I	GGNCC	4 cut(s)	34, 69, 231, 347
BmiI	GGNNCC	3 cut(s)	6, 232, 348
BmrFI	CCNGG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	92, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 313
Bse8I	GATNNNNATC	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	92, 234
BseGI	GGATG	2 cut(s)	48, 244
BseJI	GATNNNNATC	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	31, 313
BsePI	GCGCGC	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	347
Bsh1236I	CGCG	3 cut(s)	115, 128, 248
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	97, 233
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	31, 313
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	97, 233
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	118, 217, 362
BspACI	CCGC	2 cut(s)	248, 269
BspANI	GGCC	2 cut(s)	97, 233
BspFNI	CGCG	3 cut(s)	115, 128, 248
BspLI	GGNNCC	3 cut(s)	6, 232, 348
BspPI	GGATC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	92, 234
BssHII	GCGCGC	1 cut(s)	126
BssMI	GATC	3 cut(s)	118, 217, 362
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	104, 108, 128
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	48, 244
BstFNI	CGCG	3 cut(s)	115, 128, 248
BstHHI	GCGC	4 cut(s)	128, 130, 154, 248
BstKTI	GATC	3 cut(s)	121, 220, 365
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	3 cut(s)	118, 217, 362
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 112, 136
BstSCI	CCNGG	1 cut(s)	306
BstUI	CGCG	3 cut(s)	115, 128, 248
BsuRI	GGCC	2 cut(s)	97, 233
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	48, 244
Cac8I	GCNNGC	3 cut(s)	104, 108, 128
CfoI	GCGC	4 cut(s)	128, 130, 154, 248
Cfr13I	GGNCC	4 cut(s)	34, 69, 231, 347
CviAII	CATG	2 cut(s)	66, 99
CviJI	RGCY	4 cut(s)	81, 97, 164, 233
CviKI_1	RGCY	4 cut(s)	81, 97, 164, 233
DpnI	GATC	3 cut(s)	120, 219, 364
DpnII	GATC	3 cut(s)	118, 217, 362
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	34, 69, 347
Eco53kI	GAGCTC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	2 cut(s)	69, 102
FaiI	YATR	4 cut(s)	67, 85, 100, 279
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	2 cut(s)	65, 98
FokI	GGATG	2 cut(s)	35, 251
FriOI	GRGCYC	1 cut(s)	83
GlaI	GCGC	4 cut(s)	127, 129, 153, 247
HaeIII	GGCC	2 cut(s)	97, 233
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	4 cut(s)	128, 130, 154, 248
Hin1II	CATG	2 cut(s)	69, 102
Hin6I	GCGC	4 cut(s)	126, 128, 152, 246
HinP1I	GCGC	4 cut(s)	126, 128, 152, 246
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	53, 222, 296
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	191, 203
HpyCH4III	ACNGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 112, 136
Hsp92II	CATG	2 cut(s)	69, 102
HspAI	GCGC	4 cut(s)	126, 128, 152, 246
Kzo9I	GATC	3 cut(s)	118, 217, 362
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	17, 92, 116, 320, 363
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	120, 219, 364
MboI	GATC	3 cut(s)	118, 217, 362
MboII	GAAGA	2 cut(s)	203, 323
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	76
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
Msp20I	TGGCCA	1 cut(s)	97
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	3 cut(s)	115, 128, 248
MwoI	GCNNNNNNNGC	3 cut(s)	103, 112, 136
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	118, 217, 362
NlaIII	CATG	2 cut(s)	69, 102
NlaIV	GGNNCC	3 cut(s)	6, 232, 348
NmeAIII	GCCGAG	2 cut(s)	240, 259
NmuCI	GTSAC	1 cut(s)	140
PauI	GCGCGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	6, 232, 348
PspPI	GGNCC	4 cut(s)	34, 69, 231, 347
PteI	GCGCGC	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	83
Sau3AI	GATC	3 cut(s)	118, 217, 362
Sau96I	GGNCC	4 cut(s)	34, 69, 231, 347
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	9 cut(s)	58, 74, 83, 178, 214, 293, 318, 330, 371
SinI	GGWCC	3 cut(s)	34, 69, 347
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	248, 269
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	252, 330
TasI	AATT	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	210, 270, 294
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	34, 69, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.