RLG00000033889

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001849
Physical Location & Seq
Forward (+)
33761533 .. 33762341
809 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033889

Sequence Viewer

Length: 534 bp
ATGGACCGAATGCAGCCCCAAAATCAAACGTTCCCACATCTGGTCCATCAAATCCACATCCTCAAGAAACATGGACCTCACCAAGCTCACACCCACCGTGGCCATGCTCGCCGGCAACGCGAGATCGACGCGCATGAGCCTCTCAACACAGTCGTTTCTCAGCACAGAGAAAGGGAAATCATACTTGTCACGTGGGGCTCGATCTTCCTCGCTCCAGAGATGGTACTCTTTGTCGATGAAGAAATCGAGGTCAGGCTCACGCACCTGGAAGAGTGTGACGGCAGAGCACACCCAAGAGTCGACGTGGGAGGTGTAGTACTGGTAGAAGATGAAAGAGAGGCGAAAGGTTTTGATTGGAGAATTGGGGCGGAGAATGAGAGCGCAGTTGACGAACTCGGCGAAGCCGTGGCTCGTGATGGGGAGGGGTTCGGCGTCGTTGACAGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGGGGGATCGCCATTGGTGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.72

Weight (kDa)

4.85

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AccII CGCG 2 cut(s) 120, 131
AciI CCGC 1 cut(s) 368
AclI AACGTT 1 cut(s) 29
AclWI GGATC 1 cut(s) 499
AcoI YGGCCR 1 cut(s) 100
AcvI CACGTG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 2 cut(s) 225, 318
AfiI CCNNNNNNNGG 2 cut(s) 40, 503
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 264, 484
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 2 cut(s) 470, 501
AlwI GGATC 1 cut(s) 499
AoxI GGCC 2 cut(s) 100, 526
ApeKI GCWGC 1 cut(s) 13
AspLEI GCGC 2 cut(s) 133, 383
AspS9I GGNCC 4 cut(s) 4, 43, 74, 482
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 4 cut(s) 4, 43, 74, 482
BalI TGGCCA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 200
BauI CACGAG 1 cut(s) 411
BbrPI CACGTG 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 25
BccI CCATC 4 cut(s) 54, 214, 410, 518
BceAI ACGGC 2 cut(s) 295, 389
BciT130I CCWGG 2 cut(s) 266, 486
BcoDI GTCTC 2 cut(s) 470, 501
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 266, 486
Bme18I GGWCC 4 cut(s) 4, 43, 74, 482
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 4, 43, 74, 482
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 2 cut(s) 266, 486
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 3 cut(s) 97, 405, 485
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 503
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 324
BseBI CCWGG 2 cut(s) 266, 486
BseDI CCNNGG 3 cut(s) 97, 405, 485
BseGI GGATG 2 cut(s) 57, 529
BseLI CCNNNNNNNGG 2 cut(s) 40, 503
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 120, 131
BshFI GGCC 2 cut(s) 102, 528
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 40, 503
BsmAI GTCTC 2 cut(s) 470, 501
BsmBI CGTCTC 2 cut(s) 470, 501
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 2 cut(s) 102, 528
Bsp1286I GDGCHC 2 cut(s) 200, 289
Bsp143I GATC 3 cut(s) 123, 201, 491
BspACI CCGC 1 cut(s) 368
BspANI GGCC 2 cut(s) 102, 528
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 2 cut(s) 120, 131
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 97, 405, 485
BssMI GATC 3 cut(s) 123, 201, 491
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 266, 486
Bst4CI ACNGT 2 cut(s) 98, 151
Bst6I CTCTTC 2 cut(s) 264, 441
BstACI GRCGYC 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 109, 113
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 2 cut(s) 97, 405
BstF5I GGATG 2 cut(s) 57, 529
BstFNI CGCG 2 cut(s) 120, 131
BstHHI GCGC 2 cut(s) 133, 383
BstKTI GATC 3 cut(s) 126, 204, 494
BstMAI GTCTC 2 cut(s) 470, 501
BstMBI GATC 3 cut(s) 123, 201, 491
BstMWI GCNNNNNNNGC 2 cut(s) 108, 117
BstNI CCWGG 2 cut(s) 266, 486
BstSCI CCNGG 2 cut(s) 264, 484
BstUI CGCG 2 cut(s) 120, 131
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 102, 528
BtgI CCRYGG 2 cut(s) 97, 405
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 57, 529
Cac8I GCNNGC 2 cut(s) 109, 113
CfoI GCGC 2 cut(s) 133, 383
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 4 cut(s) 4, 43, 74, 482
CseI GACGC 2 cut(s) 137, 421
Csp6I GTAC 2 cut(s) 224, 317
CviAII CATG 3 cut(s) 71, 104, 134
CviJI RGCY 9 cut(s) 16, 86, 102, 139, 198, 256, 404, 410, 528
CviKI_1 RGCY 9 cut(s) 16, 86, 102, 139, 198, 256, 404, 410, 528
CviQI GTAC 2 cut(s) 224, 317
DdeI CTNAG 1 cut(s) 159
DpnI GATC 3 cut(s) 125, 203, 493
DpnII GATC 3 cut(s) 123, 201, 491
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 264, 441
EarI CTCTTC 2 cut(s) 264, 441
EciI GGCGGA 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 4 cut(s) 4, 43, 74, 482
Eco72I CACGTG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 264, 484
EcoT38I GRGCYC 1 cut(s) 200
Esp3I CGTCTC 2 cut(s) 470, 501
FaeI CATG 3 cut(s) 74, 107, 137
FaiI YATR 4 cut(s) 72, 105, 135, 182
FaqI GGGAC 1 cut(s) 495
FatI CATG 3 cut(s) 70, 103, 133
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 14
GlaI GCGC 2 cut(s) 132, 382
GluI GCNGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 102, 528
HapII CCGG 1 cut(s) 112
HgaI GACGC 2 cut(s) 137, 421
HhaI GCGC 2 cut(s) 133, 383
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 3 cut(s) 74, 107, 137
Hin6I GCGC 2 cut(s) 131, 381
HinP1I GCGC 2 cut(s) 131, 381
HincII GTYRAC 3 cut(s) 301, 388, 439
HindII GTYRAC 3 cut(s) 301, 388, 439
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 3 cut(s) 301, 388, 439
Hpy188III TCNNGA 3 cut(s) 64, 215, 413
Hpy8I GTNNAC 3 cut(s) 301, 388, 439
Hpy99I CGWCG 3 cut(s) 131, 305, 437
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 2 cut(s) 98, 151
HpyCH4IV ACGT 3 cut(s) 29, 191, 303
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 117
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 3 cut(s) 29, 191, 303
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 3 cut(s) 74, 107, 137
HspAI GCGC 2 cut(s) 131, 381
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
Kzo9I GATC 3 cut(s) 123, 201, 491
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 1 cut(s) 25
MaeII ACGT 3 cut(s) 29, 191, 303
MaeIII GTNAC 2 cut(s) 187, 275
MalI GATC 3 cut(s) 125, 203, 493
MboI GATC 3 cut(s) 123, 201, 491
MboII GAAGA 5 cut(s) 196, 251, 281, 338, 458
MhlI GDGCHC 2 cut(s) 200, 289
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 1 cut(s) 306
Mox20I TGGCCA 1 cut(s) 102
MroNI GCCGGC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 266, 486
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 2 cut(s) 266, 486
MvnI CGCG 2 cut(s) 120, 131
MwoI GCNNNNNNNGC 2 cut(s) 108, 117
NaeI GCCGGC 1 cut(s) 113
NdeII GATC 3 cut(s) 123, 201, 491
NgoMIV GCCGGC 1 cut(s) 111
NlaIII CATG 3 cut(s) 74, 107, 137
NlaIV GGNNCC 1 cut(s) 483
NmeAIII GCCGAG 1 cut(s) 375
NmuCI GTSAC 2 cut(s) 187, 275
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 396, 402
PctI GAATGC 1 cut(s) 15
PdiI GCCGGC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 305
PmaCI CACGTG 1 cut(s) 192
PmlI CACGTG 1 cut(s) 192
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 264, 484
PspCI CACGTG 1 cut(s) 192
PspGI CCWGG 2 cut(s) 264, 484
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 4 cut(s) 4, 43, 74, 482
RsaI GTAC 2 cut(s) 225, 318
RsaNI GTAC 2 cut(s) 224, 317
SalI GTCGAC 1 cut(s) 299
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 123, 201, 491
Sau96I GGNCC 4 cut(s) 4, 43, 74, 482
ScaI AGTACT 1 cut(s) 318
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 2 cut(s) 266, 486
SduI GDGCHC 2 cut(s) 200, 289
SinI GGWCC 4 cut(s) 4, 43, 74, 482
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 360
SsiI CCGC 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 264, 484
TaaI ACNGT 2 cut(s) 98, 151
TaiI ACGT 3 cut(s) 32, 194, 306
TaqI TCGA 6 cut(s) 126, 200, 234, 246, 300, 465
TaqII GACCGA 1 cut(s) 21
TasI AATT 1 cut(s) 360
TatI WGTACW 1 cut(s) 316
TseFI GTSAC 2 cut(s) 187, 275
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 187, 275
TspDTI ATGAA 2 cut(s) 252, 345
VpaK11BI GGWCC 4 cut(s) 4, 43, 74, 482
XmiI GTMKAC 1 cut(s) 300
ZrmI AGTACT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.