RLG00000014510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001849
Physical Location & Seq
Forward (+)
54112499 .. 54113005
507 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014510

Sequence Viewer

Length: 507 bp
ATGCTCCCACATCTGGTCCATCAAATCCACATCCTCAAGAAACATGGACCTCACCGAGCTCACACCCATCGTAACAATGCTCGCCAGCAACGCGAGATCGATGCGCGTGAGCCTCTCAACACAGCAGTTTCTCAGCACAGAGAAAGGGAAATCATACTTGTCACGCGGGGCTTAATCTTCCTCGCTCCAGAGATGGTACTCTTTGTCGATGAAGAAATCGAGGTCAGGCTCACGCACCTGGAAGAGCGTGACGGCAGATCGCACCCAAGAGTCGACGTGGGAGGTGTAGTACTGGTAGAAGATGAAAGAGAGGCGGAAGGTTTTGATTGGAGAATTGGGGCGGAGAATGAGAGCGCGGTTGACGAACTCGGCGAAGCCGTGGCTCGTGATGGGGAGGGGTTCGGCGTCGTTGACTGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCGCCATTGGTGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.78

Weight (kDa)

4.72

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AccII CGCG 4 cut(s) 93, 106, 166, 356
AciI CCGC 4 cut(s) 166, 314, 341, 356
AclWI GGATC 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 2 cut(s) 198, 291
AfiI CCNNNNNNNGG 2 cut(s) 13, 476
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 443, 474
AlwI GGATC 1 cut(s) 472
AoxI GGCC 1 cut(s) 499
AspLEI GCGC 2 cut(s) 106, 356
AspS9I GGNCC 3 cut(s) 16, 47, 455
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 3 cut(s) 16, 47, 455
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 61
BccI CCATC 5 cut(s) 27, 75, 187, 383, 491
BceAI ACGGC 2 cut(s) 268, 362
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 443, 474
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 3 cut(s) 16, 47, 455
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 16, 47, 455
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 424
BpmI CTGGAG 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 20
Bsa29I ATCGAT 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 476
Bse1I ACTGG 2 cut(s) 297, 419
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 30, 502
BseLI CCNNNNNNNGG 2 cut(s) 13, 476
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 297, 419
Bsh1236I CGCG 4 cut(s) 93, 106, 166, 356
BshFI GGCC 1 cut(s) 501
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 61
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 13, 476
BsmAI GTCTC 2 cut(s) 443, 474
BsmBI CGTCTC 2 cut(s) 443, 474
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 96, 257, 464
BspACI CCGC 4 cut(s) 166, 314, 341, 356
BspANI GGCC 1 cut(s) 501
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 4 cut(s) 93, 106, 166, 356
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 297, 419
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 3 cut(s) 96, 257, 464
BssNI GRCGYC 1 cut(s) 405
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 237, 414
BstACI GRCGYC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 82, 86
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 30, 502
BstFNI CGCG 4 cut(s) 93, 106, 166, 356
BstHHI GCGC 2 cut(s) 106, 356
BstKTI GATC 3 cut(s) 99, 260, 467
BstMAI GTCTC 2 cut(s) 443, 474
BstMBI GATC 3 cut(s) 96, 257, 464
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstUI CGCG 4 cut(s) 93, 106, 166, 356
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 501
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 30, 502
Cac8I GCNNGC 2 cut(s) 82, 86
CfoI GCGC 2 cut(s) 106, 356
Cfr13I GGNCC 3 cut(s) 16, 47, 455
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 197, 290
CviAII CATG 1 cut(s) 44
CviJI RGCY 7 cut(s) 59, 112, 171, 229, 377, 383, 501
CviKI_1 RGCY 7 cut(s) 59, 112, 171, 229, 377, 383, 501
CviQI GTAC 2 cut(s) 197, 290
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 98, 259, 466
DpnII GATC 3 cut(s) 96, 257, 464
Eam1104I CTCTTC 2 cut(s) 237, 414
EarI CTCTTC 2 cut(s) 237, 414
EciI GGCGGA 2 cut(s) 329, 356
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 3 cut(s) 16, 47, 455
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 61
Esp3I CGTCTC 2 cut(s) 443, 474
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 45, 155
FaqI GGGAC 1 cut(s) 468
FatI CATG 1 cut(s) 43
FauI CCCGC 1 cut(s) 159
FblI GTMKAC 1 cut(s) 273
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 61
GlaI GCGC 2 cut(s) 105, 355
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 501
HgaI GACGC 1 cut(s) 394
HhaI GCGC 2 cut(s) 106, 356
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 2 cut(s) 104, 354
HinP1I GCGC 2 cut(s) 104, 354
HincII GTYRAC 3 cut(s) 274, 361, 412
HindII GTYRAC 3 cut(s) 274, 361, 412
HinfI GANTC 1 cut(s) 270
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 274, 361, 412
Hpy188III TCNNGA 3 cut(s) 37, 188, 386
Hpy8I GTNNAC 3 cut(s) 274, 361, 412
Hpy99I CGWCG 2 cut(s) 278, 410
HpyAV CCTTC 2 cut(s) 311, 437
HpyCH4IV ACGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 2 cut(s) 104, 354
Kzo9I GATC 3 cut(s) 96, 257, 464
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 9, 190
LpnPI CCDG 8 cut(s) 98, 201, 211, 224, 251, 278, 400, 471
LweI GCATC 1 cut(s) 91
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 71, 160, 248
MalI GATC 3 cut(s) 98, 259, 466
MboI GATC 3 cut(s) 96, 257, 464
MboII GAAGA 5 cut(s) 169, 224, 254, 311, 431
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 1 cut(s) 333
MlyI GAGTC 1 cut(s) 279
MseI TTAA 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 4 cut(s) 93, 106, 166, 356
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 3 cut(s) 96, 257, 464
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 456
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 160, 248
PciSI GCTCTTC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 2 cut(s) 369, 375
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 3 cut(s) 16, 47, 455
RsaI GTAC 2 cut(s) 198, 291
RsaNI GTAC 2 cut(s) 197, 290
SacI GAGCTC 1 cut(s) 61
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 3 cut(s) 96, 257, 464
Sau96I GGNCC 3 cut(s) 16, 47, 455
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 61
SetI ASST 8 cut(s) 52, 61, 225, 240, 279, 286, 322, 426
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 3 cut(s) 16, 47, 455
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 333
SsiI CCGC 4 cut(s) 166, 314, 341, 356
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 279
TaqI TCGA 5 cut(s) 99, 207, 219, 273, 438
TasI AATT 1 cut(s) 333
TatI WGTACW 1 cut(s) 289
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseFI GTSAC 2 cut(s) 160, 248
Tsp45I GTSAC 2 cut(s) 160, 248
TspDTI ATGAA 2 cut(s) 225, 318
VpaK11BI GGWCC 3 cut(s) 16, 47, 455
XmiI GTMKAC 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.