Rh1AG012000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001849
Physical Location & Seq
Reverse (-)
2027667 .. 2027981
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG012000.1

Sequence Viewer

Length: 315 bp
ATGGTACTCTTTGTCGATGAAGAAGTTGAGGTTAGGCTCACGCACCCGGAAGCGAGTGACGGCAGAGCGCACCCAAGAGTCGACTTGGGAGGTGTAGTACTGGTAGAAGATGAAAGAGAGGTGGAAGGTTTTGATCGGAGAATTGGGGCGGAGAATGAGAGCGCTATTGATGAACTCGGCGAAGCCGTGGCTCGTGACGGGGAGGGGTTCGGCATCGTTGACCGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCGCCATTGGCGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.07

Weight (kDa)

4.05

Isoelectric Point (pI)

22.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 149, 284
AclWI GGATC 1 cut(s) 280
AfaI GTAC 2 cut(s) 6, 99
AfeI AGCGCT 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 229, 284
Alw26I GTCTC 2 cut(s) 251, 282
AlwI GGATC 1 cut(s) 280
Aor51HI AGCGCT 1 cut(s) 163
AoxI GGCC 1 cut(s) 307
AspLEI GCGC 2 cut(s) 70, 164
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 2 cut(s) 47, 224
AvaII GGWCC 1 cut(s) 263
BauI CACGAG 1 cut(s) 192
BccI CCATC 1 cut(s) 299
BceAI ACGGC 2 cut(s) 76, 170
BcnI CCSGG 2 cut(s) 47, 224
BcoDI GTCTC 2 cut(s) 251, 282
BfoI RGCGCY 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 47, 224
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 47, 224
BmsI GCATC 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 47, 224
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 284
Bse1I ACTGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 229, 284
BseNI ACTGG 1 cut(s) 105
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 47, 223
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 229, 284
BsmAI GTCTC 2 cut(s) 251, 282
BsmBI CGTCTC 2 cut(s) 251, 282
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 133, 272
BspACI CCGC 2 cut(s) 149, 284
BspANI GGCC 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 133, 272
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 310
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 70, 164
BstKTI GATC 2 cut(s) 136, 275
BstMAI GTCTC 2 cut(s) 251, 282
BstMBI GATC 2 cut(s) 133, 272
BstSCI CCNGG 2 cut(s) 45, 222
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 310
CfoI GCGC 2 cut(s) 70, 164
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 5, 98
CviJI RGCY 4 cut(s) 37, 185, 191, 309
CviKI_1 RGCY 4 cut(s) 37, 185, 191, 309
CviQI GTAC 2 cut(s) 5, 98
DpnI GATC 2 cut(s) 135, 274
DpnII GATC 2 cut(s) 133, 272
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 263
Eco47III AGCGCT 1 cut(s) 163
Esp3I CGTCTC 2 cut(s) 251, 282
FaqI GGGAC 1 cut(s) 276
FauI CCCGC 1 cut(s) 277
FblI GTMKAC 1 cut(s) 81
GlaI GCGC 2 cut(s) 69, 163
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 47, 223
HhaI GCGC 2 cut(s) 70, 164
Hin6I GCGC 2 cut(s) 68, 162
HinP1I GCGC 2 cut(s) 68, 162
HincII GTYRAC 2 cut(s) 82, 220
HindII GTYRAC 2 cut(s) 82, 220
HinfI GANTC 1 cut(s) 78
HpaII CCGG 2 cut(s) 47, 223
Hpy166II GTNNAC 2 cut(s) 82, 220
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 82, 220
HpyAV CCTTC 2 cut(s) 119, 245
HspAI GCGC 2 cut(s) 68, 162
Kzo9I GATC 2 cut(s) 133, 272
LpnPI CCDG 4 cut(s) 60, 86, 236, 279
LweI GCATC 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 56, 194
MalI GATC 2 cut(s) 135, 274
MboI GATC 2 cut(s) 133, 272
MboII GAAGA 3 cut(s) 32, 119, 239
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 8 cut(s) 22, 83, 112, 196, 223, 241, 262, 286
MspI CCGG 2 cut(s) 47, 223
MspR9I CCNGG 2 cut(s) 47, 224
NciI CCSGG 2 cut(s) 47, 224
NdeII GATC 2 cut(s) 133, 272
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 56, 194
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 6, 99
RsaNI GTAC 2 cut(s) 5, 98
SalI GTCGAC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 133, 272
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 99
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 2 cut(s) 47, 224
SetI ASST 5 cut(s) 33, 94, 123, 130, 234
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 141
SsiI CCGC 2 cut(s) 149, 284
StyD4I CCNGG 2 cut(s) 45, 222
TaqI TCGA 3 cut(s) 15, 81, 246
TasI AATT 1 cut(s) 141
TatI WGTACW 1 cut(s) 97
TseFI GTSAC 2 cut(s) 56, 194
Tsp45I GTSAC 2 cut(s) 56, 194
TspDTI ATGAA 3 cut(s) 33, 126, 186
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.