Rh1AG077100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001849
Physical Location & Seq
Reverse (-)
12960921 .. 12961235
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG077100.1

Sequence Viewer

Length: 315 bp
ATGGTACTCTTTGTCGATGAAGAAATCGAGGTCAGGCTCATGCACCTGGAAGCGCGTGACGGCAGAGCGCACCCAAGAGTCAACGTGGGAGGTGTAGTACTGGTAAAAGATGAAAGAGAGGTGGAAGGTTTTGATTGGAGAATTGGGGCGGAGAATGAGAGCGCGGTTGACGAACTCGACGAAGCCGTGGCTCGTGATGGGGAGGGGTTCGGCATCATTGACCGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCGCCATTGGCGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.27

Weight (kDa)

4.08

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 55, 164
AciI CCGC 3 cut(s) 149, 164, 284
AclWI GGATC 1 cut(s) 280
AfaI GTAC 2 cut(s) 6, 99
AfiI CCNNNNNNNGG 2 cut(s) 229, 284
AjnI CCWGG 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 251, 282
AlwI GGATC 1 cut(s) 280
AoxI GGCC 1 cut(s) 307
AspLEI GCGC 3 cut(s) 55, 70, 164
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 263
BauI CACGAG 1 cut(s) 192
BccI CCATC 2 cut(s) 191, 299
BceAI ACGGC 2 cut(s) 76, 170
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 251, 282
BmcAI AGTACT 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 47, 224
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 47, 224
BmsI GCATC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 284
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 229, 284
BseNI ACTGG 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 55, 164
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 229, 284
BsmAI GTCTC 2 cut(s) 251, 282
BsmBI CGTCTC 2 cut(s) 251, 282
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 272
BspACI CCGC 3 cut(s) 149, 164, 284
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 2 cut(s) 55, 164
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 272
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 2 cut(s) 55, 164
BstHHI GCGC 3 cut(s) 55, 70, 164
BstKTI GATC 1 cut(s) 275
BstMAI GTCTC 2 cut(s) 251, 282
BstMBI GATC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 45, 222
BstUI CGCG 2 cut(s) 55, 164
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 310
CfoI GCGC 3 cut(s) 55, 70, 164
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 5, 98
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 37, 185, 191, 309
CviKI_1 RGCY 4 cut(s) 37, 185, 191, 309
CviQI GTAC 2 cut(s) 5, 98
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 45
Esp3I CGTCTC 2 cut(s) 251, 282
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 277
GlaI GCGC 3 cut(s) 54, 69, 163
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 223
HhaI GCGC 3 cut(s) 55, 70, 164
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 3 cut(s) 53, 68, 162
HinP1I GCGC 3 cut(s) 53, 68, 162
HincII GTYRAC 2 cut(s) 82, 169
HindII GTYRAC 2 cut(s) 82, 169
HinfI GANTC 1 cut(s) 78
HpaII CCGG 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 82, 169
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 82, 169
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 119, 245
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 3 cut(s) 53, 68, 162
Kzo9I GATC 1 cut(s) 272
LpnPI CCDG 6 cut(s) 19, 32, 59, 86, 236, 279
LweI GCATC 1 cut(s) 222
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 2 cut(s) 32, 239
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 8 cut(s) 22, 83, 112, 196, 223, 241, 262, 286
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 47, 224
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 55, 164
NciI CCSGG 1 cut(s) 224
NdeII GATC 1 cut(s) 272
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 183
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 6, 99
RsaNI GTAC 2 cut(s) 5, 98
Sau3AI GATC 1 cut(s) 272
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 99
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 2 cut(s) 47, 224
SetI ASST 7 cut(s) 33, 48, 87, 94, 123, 130, 234
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 141
SsiI CCGC 3 cut(s) 149, 164, 284
StyD4I CCNGG 2 cut(s) 45, 222
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 15, 27, 177, 246
TasI AATT 1 cut(s) 141
TatI WGTACW 1 cut(s) 97
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 33, 126
VpaK11BI GGWCC 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.