Rh5BG251400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001849
Physical Location & Seq
Forward (+)
30967068 .. 30967382
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG251400.1

Sequence Viewer

Length: 315 bp
ATGGTACTATTTGTCGATGAAGAAGTCGAGGTCAGGCTCATGCACCCGGAAGCGCGTGATGGCGGAGCGCACCTAACAGTCGACGTGGGAGGTGTAATACTGGTAGAAGATGAAAGAGAGGCGGAAGGTTTTGATCGGAGAATTGGGGCGGAGAATGAAAGCGCGATTGACGAACTCGGCGAAGTCGTGGCTCGTGACGGGGAGGGGTTCGGCGACATTGACCGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCACTATTGGCAGGAGATGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.06

Weight (kDa)

4.05

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AccII CGCG 2 cut(s) 55, 164
AciI CCGC 3 cut(s) 63, 122, 149
AclWI GGATC 1 cut(s) 280
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 229
AjiI CACGTC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 280
AoxI GGCC 1 cut(s) 307
AspLEI GCGC 3 cut(s) 55, 70, 164
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 2 cut(s) 47, 224
AvaII GGWCC 1 cut(s) 263
BauI CACGAG 1 cut(s) 192
BccI CCATC 2 cut(s) 53, 299
BcnI CCSGG 2 cut(s) 47, 224
BcoDI GTCTC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 47, 224
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 47, 224
BpuMI CCSGG 2 cut(s) 47, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 55, 164
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 47, 223
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 133, 272
BspACI CCGC 3 cut(s) 63, 122, 149
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 2 cut(s) 55, 164
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 105
BssMI GATC 2 cut(s) 133, 272
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 222
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 2 cut(s) 55, 164
BstHHI GCGC 3 cut(s) 55, 70, 164
BstKTI GATC 2 cut(s) 136, 275
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 133, 272
BstSCI CCNGG 2 cut(s) 45, 222
BstUI CGCG 2 cut(s) 55, 164
BsuRI GGCC 1 cut(s) 309
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 310
CfoI GCGC 3 cut(s) 55, 70, 164
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 5
CviAII CATG 1 cut(s) 40
CviJI RGCY 3 cut(s) 37, 191, 309
CviKI_1 RGCY 3 cut(s) 37, 191, 309
CviQI GTAC 1 cut(s) 5
DpnI GATC 2 cut(s) 135, 274
DpnII GATC 2 cut(s) 133, 272
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 3 cut(s) 78, 137, 164
Eco47I GGWCC 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 39
FblI GTMKAC 1 cut(s) 81
GlaI GCGC 3 cut(s) 54, 69, 163
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 47, 223
HhaI GCGC 3 cut(s) 55, 70, 164
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 3 cut(s) 53, 68, 162
HinP1I GCGC 3 cut(s) 53, 68, 162
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HpaII CCGG 2 cut(s) 47, 223
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 119, 245
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 3 cut(s) 53, 68, 162
Kzo9I GATC 2 cut(s) 133, 272
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 6 cut(s) 19, 60, 86, 236, 270, 279
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 135, 274
MboI GATC 2 cut(s) 133, 272
MboII GAAGA 3 cut(s) 32, 119, 239
MluCI AATT 1 cut(s) 141
MnlI CCTC 8 cut(s) 22, 83, 112, 196, 223, 241, 262, 286
MspI CCGG 2 cut(s) 47, 223
MspR9I CCNGG 2 cut(s) 47, 224
MvnI CGCG 2 cut(s) 55, 164
NciI CCSGG 2 cut(s) 47, 224
NdeII GATC 2 cut(s) 133, 272
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 183
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SalI GTCGAC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 133, 272
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 47, 224
SetI ASST 6 cut(s) 33, 75, 87, 94, 130, 234
SinI GGWCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 141
SsiI CCGC 3 cut(s) 63, 122, 149
StyD4I CCNGG 2 cut(s) 45, 222
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 15, 27, 81, 246
TasI AATT 1 cut(s) 141
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 33, 126, 171
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.