RchiOBHm_Chr5g0007961

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
5078059 .. 5081523
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28896

Sequence Viewer

Length: 282 bp
ATGCTTTCGATGTCAGGATGCTGGTTTTGTACCAAATGGAATTGGGAGCAAAGGAATCAACCTGTAAGCTTTTCTTTCCTTGCTGCACATGGCTTCTATTATCTGATGTCAGAAAATGAGTGGTCCTGCCTGTCAAAGATTCGAAGCCTCGTCTTTGTTGAGATTGCATCTTTTTGGAACTCGGAACTGATTTTGGACATTCCTCCACCGCCAAGCTTCGTGGCTATCACAGTTGTTGGTGTCGAACCCAGAACCGTACCATATCTTTTGAAGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.77

Weight (kDa)

6.54

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 209
AfaI GTAC 2 cut(s) 31, 258
AgsI TTSAA 1 cut(s) 271
AluBI AGCT 2 cut(s) 69, 216
AluI AGCT 2 cut(s) 69, 216
ApeKI GCWGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 123
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmsI GCATC 2 cut(s) 8, 176
Bpu14I TTCGAA 1 cut(s) 142
BseGI GGATG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 142
BspACI CCGC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 232, 256
BstBI TTCGAA 1 cut(s) 142
BstF5I GGATG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 30, 257
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 2 cut(s) 89, 279
CviJI RGCY 5 cut(s) 69, 93, 147, 216, 224
CviKI_1 RGCY 5 cut(s) 69, 93, 147, 216, 224
CviQI GTAC 2 cut(s) 30, 257
Eco47I GGWCC 1 cut(s) 123
FaeI CATG 2 cut(s) 92, 282
FaiI YATR 3 cut(s) 90, 262, 280
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 2 cut(s) 88, 278
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 92, 282
HindIII AAGCTT 2 cut(s) 67, 214
HinfI GANTC 2 cut(s) 55, 139
Hpy188I TCNGA 3 cut(s) 105, 112, 184
Hpy188III TCNNGA 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 232, 256
HpyCH4V TGCA 2 cut(s) 86, 167
Hsp92II CATG 2 cut(s) 92, 282
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 7, 75, 139, 143, 262
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 8, 176
MluCI AATT 1 cut(s) 40
MnlI CCTC 2 cut(s) 158, 213
NlaIII CATG 2 cut(s) 92, 282
NspV TTCGAA 1 cut(s) 142
PfeI GAWTC 2 cut(s) 55, 139
PkrI GCNGC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 123
RsaI GTAC 2 cut(s) 31, 258
RsaNI GTAC 2 cut(s) 30, 257
SatI GCNGC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 123
SetI ASST 3 cut(s) 64, 71, 218
SfaNI GCATC 2 cut(s) 8, 176
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 123
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 209
TaaI ACNGT 2 cut(s) 232, 256
TaqI TCGA 3 cut(s) 8, 142, 243
TasI AATT 1 cut(s) 40
TfiI GAWTC 2 cut(s) 55, 139
TseI GCWGC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.