Rh2DG117200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001849
Physical Location & Seq
Forward (+)
9712350 .. 9712718
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG117200.1

Sequence Viewer

Length: 369 bp
ATGAAAATTGCAGTAAACCTCTGCCCAATTCTGGTGAGGATGCTTCGGGTTCTAGTGCTATGTGTTGCTCCGAACACAAGGAAGAGTGTTGGGCTCTGTGTTGCTTCATTGAGCTCTGTCTGCCAAGGTTGCCACGAACGACACCGCCGCCACCAACCCTGCAGCCGTACTGCCACCGTTGCTACTACCCCGAGTTCATGGTCACAGCGCGGCCGCAATGGGAGTTCATGGGTCGAATCCAAGCTAGGTACTGCTGATGGGTTATCCTGGTGGTCCGATTTGGAAGAGAGCGTGATCGATGAAGTCAGCGAAGAATTCAGCCTGGGCCTGTGTCGGGTTGAGATCGGATTTGGGGGCCGGAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.43

Weight (kDa)

9.03

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 210
AciI CCGC 4 cut(s) 145, 148, 210, 214
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 2 cut(s) 169, 250
AfiI CCNNNNNNNGG 2 cut(s) 31, 334
AjnI CCWGG 2 cut(s) 266, 321
AluBI AGCT 2 cut(s) 114, 244
AluI AGCT 2 cut(s) 114, 244
Alw21I GWGCWC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 3 cut(s) 211, 325, 355
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 314
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 3 cut(s) 273, 325, 355
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 273
BanII GRGCYC 2 cut(s) 96, 116
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 268, 323
BfaI CTAG 2 cut(s) 53, 245
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 4 cut(s) 148, 163, 211, 214
BlsI GCNGC 4 cut(s) 149, 164, 212, 215
Bme1390I CCNGG 2 cut(s) 268, 323
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 273, 325, 355
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 2 cut(s) 268, 323
BmsI GCATC 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 124, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 334
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 2 cut(s) 268, 323
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 124, 322
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 31, 334
BseMI GCAATG 1 cut(s) 223
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 213, 327, 357
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 31, 334
BsnI GGCC 3 cut(s) 213, 327, 357
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 96, 116
Bsp143I GATC 2 cut(s) 294, 342
BspACI CCGC 4 cut(s) 145, 148, 210, 214
BspANI GGCC 3 cut(s) 213, 327, 357
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 124, 322
BssMI GATC 2 cut(s) 294, 342
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 268, 323
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 77, 279
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 297, 345
BstMBI GATC 2 cut(s) 294, 342
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 3 cut(s) 120, 129, 179
BstNI CCWGG 2 cut(s) 268, 323
BstSCI CCNGG 2 cut(s) 266, 321
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 174
BstZI CGGCCG 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 3 cut(s) 213, 327, 357
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 1 cut(s) 45
CciNI GCGGCCGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 273, 325, 355
ClaI ATCGAT 1 cut(s) 297
Csp6I GTAC 2 cut(s) 168, 249
CviAII CATG 2 cut(s) 198, 228
CviJI RGCY 8 cut(s) 94, 114, 165, 213, 244, 321, 327, 357
CviKI_1 RGCY 8 cut(s) 94, 114, 165, 213, 244, 321, 327, 357
CviQI GTAC 2 cut(s) 168, 249
DpnI GATC 2 cut(s) 296, 344
DpnII GATC 2 cut(s) 294, 342
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 77, 279
EarI CTCTTC 2 cut(s) 77, 279
Ecl136II GAGCTC 1 cut(s) 114
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 124
Eco24I GRGCYC 2 cut(s) 96, 116
Eco47I GGWCC 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 266, 321
EcoT14I CCWWGG 1 cut(s) 124
EcoT38I GRGCYC 2 cut(s) 96, 116
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 201, 231
FaiI YATR 3 cut(s) 61, 199, 229
FatI CATG 2 cut(s) 197, 227
Fnu4HI GCNGC 4 cut(s) 148, 163, 211, 214
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 2 cut(s) 96, 116
Fsp4HI GCNGC 4 cut(s) 148, 163, 211, 214
FspBI CTAG 2 cut(s) 53, 245
GlaI GCGC 1 cut(s) 209
GluI GCNGC 4 cut(s) 148, 163, 211, 214
HaeIII GGCC 3 cut(s) 213, 327, 357
HapII CCGG 1 cut(s) 358
HhaI GCGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 201, 231
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 358
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 72, 277, 347
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 11, 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 129, 179
Hsp92II CATG 2 cut(s) 201, 231
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 294, 342
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 7 cut(s) 17, 172, 253, 280, 308, 335, 341
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 30
MaeI CTAG 2 cut(s) 53, 245
MaeIII GTNAC 1 cut(s) 201
MalI GATC 2 cut(s) 296, 344
MboI GATC 2 cut(s) 294, 342
MboII GAAGA 3 cut(s) 94, 296, 323
MhlI GDGCHC 2 cut(s) 96, 116
MluCI AATT 3 cut(s) 6, 27, 314
MnlI CCTC 3 cut(s) 29, 30, 354
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 2 cut(s) 268, 323
MvaI CCWGG 2 cut(s) 268, 323
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 120, 129, 179
NdeII GATC 2 cut(s) 294, 342
NlaIII CATG 2 cut(s) 201, 231
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 1 cut(s) 201
NotI GCGGCCGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 149, 164, 212, 215
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 266, 321
PspGI CCWGG 2 cut(s) 266, 321
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 3 cut(s) 273, 325, 355
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 2 cut(s) 169, 250
RsaNI GTAC 2 cut(s) 168, 249
SacI GAGCTC 1 cut(s) 116
SatI GCNGC 4 cut(s) 148, 163, 211, 214
Sau3AI GATC 2 cut(s) 294, 342
Sau96I GGNCC 3 cut(s) 273, 325, 355
ScrFI CCNGG 2 cut(s) 268, 323
SduI GDGCHC 2 cut(s) 96, 116
SetI ASST 5 cut(s) 21, 116, 130, 246, 250
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 273
Sse9I AATT 3 cut(s) 6, 27, 314
SsiI CCGC 4 cut(s) 145, 148, 210, 214
SspMI CTAG 2 cut(s) 53, 245
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 266, 321
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 2 cut(s) 234, 297
TasI AATT 3 cut(s) 6, 27, 314
TauI GCSGC 3 cut(s) 150, 213, 216
TfiI GAWTC 1 cut(s) 236
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 5 cut(s) 17, 96, 186, 216, 315
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 314
XspI CTAG 2 cut(s) 53, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.