Rh7CG094400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001849
Physical Location & Seq
Reverse (-)
7117759 .. 7120662
2904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG094400.1

Sequence Viewer

Length: 429 bp
ATGAGTTTCTTTGACTTCGGTCATGTGAAGCCTCTTTCCTCCATAAACCCTTTGTTTTGGGATGTAATTTTAACCGATCTGCATGTTTCCATTTGTCAGTCCTGCCTGTCAAAGATTCGAAGCCTCGTCTTTGTTGAGATTGCATCTTTTTGGAACTCGGAACTGGTAAGAAGTTATTTGATCGAGCACCGATTGAACTTATTCAATTACCCCACTGATTCAATTGCATGCTTTCTGTCTCTTTTCAAAGGCCTGGACTTTGGCTCTTGTCCTTTTGCCATTCAATTCCTATTTCAGAACAAAGCTACAGCAAACTTTTCCATGCCTTTAATTAATATAAATGGACTCAAGCAATTGTCTCTTGCATTTGATAATCAATTATACATGTATGCAGCACACATGATCAATTACATATTTTGGGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.44

Weight (kDa)

6.01

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 196, 205, 222, 247, 284
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 2 cut(s) 305, 424
AluI AGCT 2 cut(s) 305, 424
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 243, 363
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 392
AseI ATTAAT 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 200
AsuII TTCGAA 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 243, 363
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 152
BoxI GACNNNNGTC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 404
BshFI GGCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 243, 363
BsnI GGCC 1 cut(s) 252
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 3 cut(s) 76, 180, 402
BspANI GGCC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 118
BsrI ACTGG 1 cut(s) 168
BssMI GATC 3 cut(s) 76, 180, 402
Bst2UI CCWGG 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 3 cut(s) 79, 183, 405
BstMAI GTCTC 2 cut(s) 243, 363
BstMBI GATC 3 cut(s) 76, 180, 402
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 3 cut(s) 86, 231, 388
BstPAI GACNNNNGTC 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 229
CviAII CATG 6 cut(s) 23, 83, 228, 322, 385, 400
CviJI RGCY 6 cut(s) 31, 123, 252, 264, 305, 424
CviKI_1 RGCY 6 cut(s) 31, 123, 252, 264, 305, 424
DpnI GATC 3 cut(s) 78, 182, 404
DpnII GATC 3 cut(s) 76, 180, 402
Eco147I AGGCCT 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 252
FaeI CATG 6 cut(s) 26, 86, 231, 325, 388, 403
FatI CATG 6 cut(s) 22, 82, 227, 321, 384, 399
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 393
HaeIII GGCC 1 cut(s) 252
Hin1II CATG 6 cut(s) 26, 86, 231, 325, 388, 403
HinfI GANTC 3 cut(s) 115, 218, 345
Hpy188I TCNGA 2 cut(s) 160, 297
HpyCH4V TGCA 5 cut(s) 82, 143, 227, 365, 392
Hsp92II CATG 6 cut(s) 26, 86, 231, 325, 388, 403
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 3 cut(s) 76, 180, 402
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 5 cut(s) 115, 119, 149, 239, 266
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 1 cut(s) 152
MalI GATC 3 cut(s) 78, 182, 404
MboI GATC 3 cut(s) 76, 180, 402
MfeI CAATTG 2 cut(s) 222, 353
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 8 cut(s) 66, 205, 222, 284, 330, 353, 377, 406
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 3 cut(s) 42, 49, 134
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 3 cut(s) 71, 329, 333
MspR9I CCNGG 1 cut(s) 254
MunI CAATTG 2 cut(s) 222, 353
MvaI CCWGG 1 cut(s) 254
NdeII GATC 3 cut(s) 76, 180, 402
NlaIII CATG 6 cut(s) 26, 86, 231, 325, 388, 403
NspI RCATGY 3 cut(s) 86, 231, 388
NspV TTCGAA 1 cut(s) 118
PacI TTAATTAA 1 cut(s) 333
PaeI GCATGC 1 cut(s) 231
PceI AGGCCT 1 cut(s) 252
PciI ACATGT 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 115, 218
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PscI ACATGT 1 cut(s) 384
PshAI GACNNNNGTC 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
SaqAI TTAA 3 cut(s) 71, 329, 333
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 3 cut(s) 76, 180, 402
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 189
SetI ASST 2 cut(s) 307, 426
SfaNI GCATC 1 cut(s) 152
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 231
Sse9I AATT 8 cut(s) 66, 205, 222, 284, 330, 353, 377, 406
SseBI AGGCCT 1 cut(s) 252
StuI AGGCCT 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 252
TaqI TCGA 2 cut(s) 118, 183
TaqII GACCGA 1 cut(s) 8
TasI AATT 8 cut(s) 66, 205, 222, 284, 330, 353, 377, 406
TfiI GAWTC 2 cut(s) 115, 218
Tru1I TTAA 3 cut(s) 71, 329, 333
Tru9I TTAA 3 cut(s) 71, 329, 333
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 392
TspRI CASTG 1 cut(s) 220
VspI ATTAAT 1 cut(s) 333
XceI RCATGY 3 cut(s) 86, 231, 388
XmnI GAANNNNTTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.