Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001849

Physical Location & Seq

Genomic Coordinates Reverse (-)

21339180 .. 21343986

Gene Structure 4807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0149300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTAAAATCAGAGACAATGATGGTTCGAAGAAGAGTTCGGTGACTACGATGAGGAAGAACAAAACACCCCAACTCCGCTCCGCCGAGCCCAATGGTGAATCCGCCAAAAAGTTAGTTTCTACAATATTCTCTGCATCGTCTTGCCTTATTTGTGAGTTACCACCTTCTATTGGCATCACTGTGGTTACTAGTTGGAACATTCCCATTCAATCAAGACACATATATAGTCTTTTAAAAATTCAGTGGTTGCCTCTTGGAATTGCACTTGTAACAAGTGATGCCAATGCTGCTTTTACATGGCCTTTTGGAATGAGCAGATCACAAGAGCCTTCAGCCCTTAAACGGAAGCGCTCGGACTCGCAATCCGGGTCTTTGACAGAGCATGAAAGCAAACTCTATGATGCCATCCGCAGCAAGGCAGATATGGGCATGTCTGTACAAGACTTGAGGCGAGAAACAGGACTCCAGAACAATTTATTTACCAAGGCCATCAAAACACTTCAAGCCAAACAACTGATAAAAGAGGTTAAAAATTTTGAAAACAAGACGAGGAAACATTACATGGCTACAGAGTTTGAGCCCTCGAAGGAGATAACTGGTGGTGCTTGGTATGATAATGGACAGTTTGATACTGAGTTTATAAAGGTTGTAAAACGTGGGGTTGTGAAGGTCATTCATGATCAGGAGATAACCTTGGAGGAAATTTCACACGCAATTACGATGAAGAAGTTACTAACTGTTAACTTATCCGCACAGGAATTGAAACAGGTTCTTGGGGCTTTGGTTTTGGACAATGAGGTCCAGAAGGTGGAGAGCACTGATACGGGGGACTTTGTCGGTGCTAAAGCTAGGAAAGATTGTTATAAGTGCTGCAAGAGAGGGGAACCAAACTTAGCATCCATGGCTTCCATTCCATGCGGAGTCTGTCCGTGTATTAATCAATGTACCCCAGATGGCATTATTTCCCCAACCACCTGTGAATACTTAAAAAAATGGTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

37.37

Weight (kDa)

9.03

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	121 - 229	8.5e-30	RNA polymerase Rpc34 subunit
RNA_pol_Rpc34	PF05158	232 - 335	1.5e-11	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342981 RchiOBHm_Chr5g0007961
rosa_laevigata	RLG00000001720 RLG00000005133 RLG00000008857 RLG00000014510 RLG00000018028 RLG00000018970 RLG00000019803 RLG00000022600 RLG00000028537 RLG00000028743 RLG00000029184 RLG00000029199 RLG00000033889
rosa_multiflora	Rmu_sc0004928.1_g000017
rosa_roxburghii	Rroxscaffold_7G00195360 Rroxscaffold_7G00215600
rosa_rugosa	Rorug06G0149300
rosa_samantha	Rh1AG012000 Rh1AG077100 Rh2AG113100 Rh2AG582800 Rh2BG087500 Rh2BG116100 Rh2CG089900 Rh2CG118100 Rh2CG169200 Rh2DG117200 Rh2DG573900 Rh3BG109000 Rh3BG295200 Rh3CG110500 Rh3DG104300 Rh3DG192500 Rh3DG268800 Rh4CG042900 Rh5BG251400 Rh5DG259400 Rh6CG266900 Rh7AG157100 Rh7AG476600 Rh7BG447900 Rh7CG094400 Rh7CG495000 Rh7DG461900
rosa_wichuraiana	Rw7G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	644, 867
AasI	GACNNNNNNGTC	1 cut(s)	800
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccBSI	CCGCTC	1 cut(s)	81
AciI	CCGC	6 cut(s)	79, 84, 105, 412, 753, 921
AcsI	RAATTY	3 cut(s)	240, 535, 705
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	441, 949
AfeI	AGCGCT	1 cut(s)	353
AfiI	CCNNNNNNNGG	4 cut(s)	173, 345, 418, 811
AgsI	TTSAA	4 cut(s)	212, 506, 542, 766
AhlI	ACTAGT	1 cut(s)	191
AluBI	AGCT	1 cut(s)	851
AluI	AGCT	1 cut(s)	851
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	1 cut(s)	9
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	2 cut(s)	302, 489
ApeKI	GCWGC	3 cut(s)	290, 414, 873
ApoI	RAATTY	3 cut(s)	240, 535, 705
AseI	ATTAAT	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	802
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	55, 110
AsuII	TTCGAA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	802
BanII	GRGCYC	2 cut(s)	93, 585
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	3 cut(s)	277, 426, 860
BccI	CCATC	4 cut(s)	17, 416, 500, 950
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	2 cut(s)	192, 852
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	355
BisI	GCNGC	3 cut(s)	291, 415, 874
BlsI	GCNGC	3 cut(s)	292, 416, 875
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	802
BmgT120I	GGNCC	1 cut(s)	802
BmiI	GGNNCC	1 cut(s)	888
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	5 cut(s)	146, 186, 271, 394, 908
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	469
BpuMI	CCSGG	1 cut(s)	370
BsaJI	CCNNGG	3 cut(s)	486, 696, 903
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 345, 418, 811
Bse1I	ACTGG	1 cut(s)	604
BseDI	CCNNGG	3 cut(s)	486, 696, 903
BseGI	GGATG	2 cut(s)	408, 899
BseLI	CCNNNNNNNGG	4 cut(s)	173, 345, 418, 811
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	277, 426, 860
BshFI	GGCC	2 cut(s)	304, 491
BsiHKAI	GWGCWC	1 cut(s)	821
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	4 cut(s)	173, 345, 418, 811
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	845
BsnI	GGCC	2 cut(s)	304, 491
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	93, 585, 821
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	320, 682
Bsp19I	CCATGG	1 cut(s)	903
BspACI	CCGC	6 cut(s)	79, 84, 105, 412, 753, 921
BspANI	GGCC	2 cut(s)	304, 491
BspCNI	CTCAG	1 cut(s)	628
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	81
BsrGI	TGTACA	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	3 cut(s)	486, 696, 903
BssMI	GATC	2 cut(s)	320, 682
BssT1I	CCWWGG	3 cut(s)	486, 696, 903
Bst4CI	ACNGT	3 cut(s)	184, 627, 742
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	636, 895
BstDSI	CCRYGG	1 cut(s)	903
BstF5I	GGATG	2 cut(s)	408, 899
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	2 cut(s)	323, 685
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	320, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 905
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	277, 426, 860
BsuRI	GGCC	2 cut(s)	304, 491
BtgI	CCRYGG	1 cut(s)	903
BtsCI	GGATG	2 cut(s)	408, 899
BtsIMutI	CAGTG	3 cut(s)	180, 251, 819
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	802
Csp6I	GTAC	2 cut(s)	440, 948
CviAII	CATG	7 cut(s)	300, 386, 433, 565, 680, 904, 918
CviQI	GTAC	2 cut(s)	440, 948
DdeI	CTNAG	2 cut(s)	636, 895
DpnI	GATC	2 cut(s)	322, 684
DpnII	GATC	2 cut(s)	320, 682
DraI	TTTAAA	1 cut(s)	237
DrdI	GACNNNNNNGTC	1 cut(s)	800
DseDI	GACNNNNNNGTC	1 cut(s)	800
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	2 cut(s)	73, 94
Eco130I	CCWWGG	3 cut(s)	486, 696, 903
Eco24I	GRGCYC	2 cut(s)	93, 585
Eco47I	GGWCC	1 cut(s)	802
Eco47III	AGCGCT	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	318
EcoT14I	CCWWGG	3 cut(s)	486, 696, 903
EcoT38I	GRGCYC	2 cut(s)	93, 585
ErhI	CCWWGG	3 cut(s)	486, 696, 903
FaeI	CATG	7 cut(s)	303, 389, 436, 568, 683, 907, 921
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	7 cut(s)	299, 385, 432, 564, 679, 903, 917
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	3 cut(s)	291, 415, 874
FokI	GGATG	2 cut(s)	395, 886
FriOI	GRGCYC	2 cut(s)	93, 585
Fsp4HI	GCNGC	3 cut(s)	291, 415, 874
FspBI	CTAG	2 cut(s)	192, 852
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	3 cut(s)	291, 415, 874
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	2 cut(s)	304, 491
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	7 cut(s)	303, 389, 436, 568, 683, 907, 921
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HinfI	GANTC	4 cut(s)	101, 359, 465, 924
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	2 cut(s)	55, 110
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	3 cut(s)	14, 358, 1010
Hpy188III	TCNNGA	5 cut(s)	216, 469, 680, 686, 805
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	5 cut(s)	177, 342, 583, 664, 802
HpyCH4III	ACNGT	3 cut(s)	184, 627, 742
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	3 cut(s)	137, 266, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 905
HpyF3I	CTNAG	2 cut(s)	636, 895
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	7 cut(s)	303, 389, 436, 568, 683, 907, 921
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	2 cut(s)	320, 682
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	3 cut(s)	277, 426, 860
LweI	GCATC	5 cut(s)	146, 186, 271, 394, 908
MaeI	CTAG	2 cut(s)	192, 852
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	5 cut(s)	43, 159, 187, 271, 732
MalI	GATC	2 cut(s)	322, 684
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	2 cut(s)	320, 682
MboII	GAAGA	4 cut(s)	43, 46, 70, 739
MhlI	GDGCHC	3 cut(s)	93, 585, 821
MluCI	AATT	7 cut(s)	240, 261, 475, 535, 705, 717, 761
MlyI	GAGTC	3 cut(s)	353, 459, 933
MmeI	TCCRAC	2 cut(s)	176, 981
MnlI	CCTC	9 cut(s)	48, 264, 444, 520, 546, 595, 694, 793, 875
MseI	TTAA	6 cut(s)	236, 342, 531, 744, 939, 989
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	290, 905
NciI	CCSGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	2 cut(s)	320, 682
NlaIII	CATG	7 cut(s)	303, 389, 436, 568, 683, 907, 921
NlaIV	GGNNCC	1 cut(s)	888
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	29
PagI	TCATGA	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	836
PflMI	CCANNNNNTGG	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	292, 416, 875
PleI	GAGTC	3 cut(s)	353, 459, 932
PpsI	GAGTC	3 cut(s)	353, 459, 932
PshBI	ATTAAT	1 cut(s)	939
PsiI	TTATAA	2 cut(s)	644, 867
PspN4I	GGNNCC	1 cut(s)	888
PspPI	GGNCC	1 cut(s)	802
PsyI	GACNNNGTC	1 cut(s)	836
RsaI	GTAC	2 cut(s)	441, 949
RsaNI	GTAC	2 cut(s)	440, 948
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	6 cut(s)	236, 342, 531, 744, 939, 989
SatI	GCNGC	3 cut(s)	291, 415, 874
Sau3AI	GATC	2 cut(s)	320, 682
Sau96I	GGNCC	1 cut(s)	802
SchI	GAGTC	3 cut(s)	353, 459, 933
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	3 cut(s)	93, 585, 821
SfaNI	GCATC	5 cut(s)	146, 186, 271, 394, 908
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	29
SinI	GGWCC	1 cut(s)	802
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	7 cut(s)	240, 261, 475, 535, 705, 717, 761
SsiI	CCGC	6 cut(s)	79, 84, 105, 412, 753, 921
SspI	AATATT	1 cut(s)	129
SspMI	CTAG	2 cut(s)	192, 852
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	3 cut(s)	486, 696, 903
TaaI	ACNGT	3 cut(s)	184, 627, 742
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	2 cut(s)	29, 587
TasI	AATT	7 cut(s)	240, 261, 475, 535, 705, 717, 761
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	6 cut(s)	236, 342, 531, 744, 939, 989
Tru9I	TTAA	6 cut(s)	236, 342, 531, 744, 939, 989
TscAI	CASTG	3 cut(s)	187, 251, 826
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	290, 414, 873
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	402, 668, 740
TspGWI	ACGGA	2 cut(s)	361, 921
TspRI	CASTG	3 cut(s)	187, 251, 826
Tth111I	GACNNNGTC	1 cut(s)	836
Van91I	CCANNNNNTGG	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	802
VspI	ATTAAT	1 cut(s)	939
XapI	RAATTY	3 cut(s)	240, 535, 705
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	192, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.