RLG00000029199

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001849
Physical Location & Seq
Forward (+)
34370178 .. 34372931
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029199

Sequence Viewer

Length: 555 bp
ATGATTCGCTGCTGCTGGGATGCAATCGACTGGCTCGAGCCGGAGAGGGAGTCGTCGGCGTCTGGGAGGTCGAGGTCAGCTTGTACAGGTGAGATCGAGGTCGTCGCTGGCGGCGGTGTGCAGGTGGAGTCGTCGCTGGCGGAGATCGACGCGCGTGAGCCTCTCAACATAGCCGTTTCTCAGCACAGAGAAAGGGAAATCATACTTGTCACGAGGGGCAATATCTTCCTCGCTCCAGAGATGGTACTCTTTGTCGATGAAGAAATCGAGGTCAGGCTCACGCACCTGGAAGCGCGTGACAGCAGAGCGCACCCACGAGTCGATGTGGGAGGTGTAGTACTGGTAGAAGATGAAAGAGAGGCTGAAGGTTTTGCTTGGAGAATTGAGGCGGAGAATGAGAGCGCGGTTGACGAACTCGGCGAAGCCGTGGCTCGTGATGAGGAGGGGTTCGGCGTCGTTGACCGAGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCACCATTGGCGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.02

Weight (kDa)

4.19

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccII CGCG 4 cut(s) 152, 154, 295, 404
AciI CCGC 6 cut(s) 111, 114, 140, 389, 404, 524
AclWI GGATC 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 2 cut(s) 59, 453
AfaI GTAC 3 cut(s) 85, 246, 339
AfiI CCNNNNNNNGG 2 cut(s) 469, 524
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 2 cut(s) 491, 522
AlwI GGATC 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 2 cut(s) 9, 12
AspLEI GCGC 4 cut(s) 154, 295, 310, 404
AspS9I GGNCC 1 cut(s) 503
AsuHPI GGTGA 2 cut(s) 101, 507
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 503
BauI CACGAG 3 cut(s) 211, 315, 432
BccI CCATC 2 cut(s) 235, 539
BceAI ACGGC 2 cut(s) 158, 410
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 491, 522
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 3 cut(s) 10, 13, 112
BlsI GCNGC 3 cut(s) 11, 14, 113
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 219
BsaHI GRCGYC 2 cut(s) 59, 453
BsaJI CCNNGG 1 cut(s) 426
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 524
Bse1I ACTGG 2 cut(s) 35, 345
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 25, 550
BseLI CCNNNNNNNGG 2 cut(s) 469, 524
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 35, 345
BseRI GAGGAG 1 cut(s) 455
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 4 cut(s) 152, 154, 295, 404
BshFI GGCC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 2 cut(s) 469, 524
BsmAI GTCTC 2 cut(s) 491, 522
BsmBI CGTCTC 2 cut(s) 491, 522
BsmFI GGGAC 1 cut(s) 516
BsnI GGCC 1 cut(s) 549
BsoBI CYCGRG 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 3 cut(s) 93, 144, 512
BspACI CCGC 6 cut(s) 111, 114, 140, 389, 404, 524
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 4 cut(s) 152, 154, 295, 404
BspLI GGNNCC 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 520
BsrGI TGTACA 1 cut(s) 83
BsrI ACTGG 2 cut(s) 35, 345
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 3 cut(s) 93, 144, 512
BssNI GRCGYC 2 cut(s) 59, 453
BssSI CACGAG 3 cut(s) 211, 315, 432
Bst2BI CACGAG 3 cut(s) 211, 315, 432
Bst2UI CCWGG 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 2 cut(s) 59, 453
BstAUI TGTACA 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 109, 138
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 2 cut(s) 25, 550
BstFNI CGCG 4 cut(s) 152, 154, 295, 404
BstHHI GCGC 4 cut(s) 154, 295, 310, 404
BstKTI GATC 3 cut(s) 96, 147, 515
BstMAI GTCTC 2 cut(s) 491, 522
BstMBI GATC 3 cut(s) 93, 144, 512
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstUI CGCG 4 cut(s) 152, 154, 295, 404
BsuRI GGCC 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 25, 550
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 109, 138
CfoI GCGC 4 cut(s) 154, 295, 310, 404
Cfr13I GGNCC 1 cut(s) 503
CseI GACGC 3 cut(s) 48, 158, 442
Csp6I GTAC 3 cut(s) 84, 245, 338
CviQI GTAC 3 cut(s) 84, 245, 338
DdeI CTNAG 1 cut(s) 180
DpnI GATC 3 cut(s) 95, 146, 514
DpnII GATC 3 cut(s) 93, 144, 512
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
EciI GGCGGA 2 cut(s) 155, 404
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 285
Esp3I CGTCTC 2 cut(s) 491, 522
FaiI YATR 2 cut(s) 170, 203
FaqI GGGAC 1 cut(s) 516
FauI CCCGC 1 cut(s) 517
Fnu4HI GCNGC 3 cut(s) 10, 13, 112
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 10, 13, 112
GlaI GCGC 4 cut(s) 153, 294, 309, 403
GluI GCNGC 3 cut(s) 10, 13, 112
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 549
HapII CCGG 1 cut(s) 41
HgaI GACGC 3 cut(s) 48, 158, 442
HhaI GCGC 4 cut(s) 154, 295, 310, 404
Hin1I GRCGYC 2 cut(s) 59, 453
Hin6I GCGC 4 cut(s) 152, 293, 308, 402
HinP1I GCGC 4 cut(s) 152, 293, 308, 402
HincII GTYRAC 2 cut(s) 409, 460
HindII GTYRAC 2 cut(s) 409, 460
HinfI GANTC 4 cut(s) 4, 50, 128, 318
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 101, 507
Hpy166II GTNNAC 2 cut(s) 409, 460
Hpy188III TCNNGA 3 cut(s) 211, 236, 434
Hpy8I GTNNAC 2 cut(s) 409, 460
Hpy99I CGWCG 5 cut(s) 58, 107, 136, 152, 458
HpyAV CCTTC 2 cut(s) 359, 485
HpyCH4V TGCA 2 cut(s) 23, 121
HpyF3I CTNAG 1 cut(s) 180
Hsp92I GRCGYC 2 cut(s) 59, 453
HspAI GCGC 4 cut(s) 152, 293, 308, 402
Kzo9I GATC 3 cut(s) 93, 144, 512
LmnI GCTCC 1 cut(s) 238
LweI GCATC 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 208, 296
MalI GATC 3 cut(s) 95, 146, 514
MboI GATC 3 cut(s) 93, 144, 512
MboII GAAGA 4 cut(s) 217, 272, 359, 479
MluCI AATT 1 cut(s) 381
MlyI GAGTC 3 cut(s) 59, 137, 327
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 4 cut(s) 152, 154, 295, 404
NdeII GATC 3 cut(s) 93, 144, 512
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 208, 296
PaeR7I CTCGAG 1 cut(s) 35
PaqCI CACCTGC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 417, 423
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 11, 14, 113
PleI GAGTC 3 cut(s) 58, 136, 326
PpsI GAGTC 3 cut(s) 58, 136, 326
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 503
PspXI VCTCGAGB 1 cut(s) 35
RsaI GTAC 3 cut(s) 85, 246, 339
RsaNI GTAC 3 cut(s) 84, 245, 338
SatI GCNGC 3 cut(s) 10, 13, 112
Sau3AI GATC 3 cut(s) 93, 144, 512
Sau96I GGNCC 1 cut(s) 503
ScaI AGTACT 1 cut(s) 339
SchI GAGTC 3 cut(s) 59, 137, 327
ScrFI CCNGG 1 cut(s) 287
SfaNI GCATC 1 cut(s) 10
Sfr274I CTCGAG 1 cut(s) 35
SinI GGWCC 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 381
SsiI CCGC 6 cut(s) 111, 114, 140, 389, 404, 524
StyD4I CCNGG 1 cut(s) 285
TaqI TCGA 9 cut(s) 27, 36, 71, 96, 147, 255, 267, 321, 486
TaqII GACCGA 1 cut(s) 477
TasI AATT 1 cut(s) 381
TatI WGTACW 2 cut(s) 83, 337
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 4
TseFI GTSAC 2 cut(s) 208, 296
TseI GCWGC 2 cut(s) 9, 12
Tsp45I GTSAC 2 cut(s) 208, 296
TspDTI ATGAA 2 cut(s) 273, 366
VpaK11BI GGWCC 1 cut(s) 503
XhoI CTCGAG 1 cut(s) 35
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.