Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004928.1

Orthogroup ID

OG0001849

Physical Location & Seq

Genomic Coordinates Forward (+)

56702 .. 58504

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004928.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggcctcgtttaccactgccttcctctgcaaccacgccgccgtattaacctcaccttactcgcctcgaaagaccagaaccaccgcaagaagcctccggaggaggaggagctctctcaaaccaaccaccatcattgccaagcaggaccagaagacggcgtttgagaaaaagtcggagaaatctgcctccacgcggggctcgatcttcctcgctccagagatggtactctttgtcgatgaagaagtcgaggtcaggctcacacactcggaagcgcgtgacggcggagcacacccaagagtagacatgggagatgtagtactggtagaagatgaaagagagggagaaggttttgatcggagaattggggcggagaatgagagcgcgattgacgaactcggcgaagccgtggctcgtgacggggaggggtttggagtcgttgacagggaagaggtggtaggagaagttgaggaagggattgcaaatggaatacgtgagttccatgagcaggatagtgagcttaagaagaagttttataagcggttagggacgaaggtgttttatcagtccaattacaatttgtaccaatctttagcagctgattggacggatacatttgcctgttttgtggctcctaatccacccaaaccagaagaagtacccttagtttgcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

224

Amino Acids

25.05

Weight (kDa)

5.32

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342981 RchiOBHm_Chr5g0007961
rosa_laevigata	RLG00000001720 RLG00000005133 RLG00000008857 RLG00000014510 RLG00000018028 RLG00000018970 RLG00000019803 RLG00000022600 RLG00000028537 RLG00000028743 RLG00000029184 RLG00000029199 RLG00000033889
rosa_multiflora	Rmu_sc0004928.1_g000017
rosa_roxburghii	Rroxscaffold_7G00195360 Rroxscaffold_7G00215600
rosa_rugosa	Rorug06G0149300
rosa_samantha	Rh1AG012000 Rh1AG077100 Rh2AG113100 Rh2AG582800 Rh2BG087500 Rh2BG116100 Rh2CG089900 Rh2CG118100 Rh2CG169200 Rh2DG117200 Rh2DG573900 Rh3BG109000 Rh3BG295200 Rh3CG110500 Rh3DG104300 Rh3DG192500 Rh3DG268800 Rh4CG042900 Rh5BG251400 Rh5DG259400 Rh6CG266900 Rh7AG157100 Rh7AG476600 Rh7BG447900 Rh7CG094400 Rh7CG495000 Rh7DG461900
rosa_wichuraiana	Rw7G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	3 cut(s)	193, 274, 383
AccIII	TCCGGA	1 cut(s)	96
AciI	CCGC	6 cut(s)	39, 84, 193, 282, 368, 538
AfaI	GTAC	4 cut(s)	225, 318, 581, 657
AfiI	CCNNNNNNNGG	3 cut(s)	154, 192, 505
AflII	CTTAAG	1 cut(s)	518
AluBI	AGCT	3 cut(s)	111, 517, 596
AluI	AGCT	3 cut(s)	111, 517, 596
Alw21I	GWGCWC	2 cut(s)	113, 289
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	593
AspLEI	GCGC	2 cut(s)	274, 383
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	145
BanII	GRGCYC	2 cut(s)	113, 200
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	113, 289
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	2 cut(s)	137, 214
BceAI	ACGGC	4 cut(s)	26, 171, 295, 389
BciVI	GTATCC	1 cut(s)	601
BfrI	CTTAAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	2 cut(s)	39, 594
BlsI	GCNGC	2 cut(s)	40, 595
BmcAI	AGTACT	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 192, 505
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	154, 192, 505
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	3 cut(s)	115, 118, 121
BseXI	GCAGC	1 cut(s)	605
Bsh1236I	CGCG	3 cut(s)	193, 274, 383
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	113, 289
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	3 cut(s)	154, 192, 505
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	113, 200, 289
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	201, 352
BspACI	CCGC	6 cut(s)	39, 84, 193, 282, 368, 538
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	96
BspFNI	CGCG	3 cut(s)	193, 274, 383
BspLI	GGNNCC	1 cut(s)	630
BspTI	CTTAAG	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	201, 352
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	491
BstDEI	CTNAG	1 cut(s)	661
BstDSI	CCRYGG	1 cut(s)	405
BstFNI	CGCG	3 cut(s)	193, 274, 383
BstHHI	GCGC	2 cut(s)	274, 383
BstKTI	GATC	2 cut(s)	204, 355
BstMBI	GATC	2 cut(s)	201, 352
BstUI	CGCG	3 cut(s)	193, 274, 383
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	405
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
CfoI	GCGC	2 cut(s)	274, 383
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	4 cut(s)	224, 317, 580, 656
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	2 cut(s)	304, 500
CviQI	GTAC	4 cut(s)	224, 317, 580, 656
DdeI	CTNAG	1 cut(s)	661
DpnI	GATC	2 cut(s)	203, 354
DpnII	GATC	2 cut(s)	201, 352
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	2 cut(s)	297, 383
Ecl136II	GAGCTC	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	113, 200
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	113, 200
FaeI	CATG	2 cut(s)	307, 503
FaiI	YATR	3 cut(s)	305, 501, 534
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	2 cut(s)	303, 499
FauI	CCCGC	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	39, 594
FriOI	GRGCYC	2 cut(s)	113, 200
Fsp4HI	GCNGC	2 cut(s)	39, 594
GlaI	GCGC	2 cut(s)	273, 382
GluI	GCNGC	2 cut(s)	39, 594
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	97
HhaI	GCGC	2 cut(s)	274, 383
Hin1II	CATG	2 cut(s)	307, 503
Hin6I	GCGC	2 cut(s)	272, 381
HinP1I	GCGC	2 cut(s)	272, 381
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	12, 301, 439
Hpy188I	TCNGA	3 cut(s)	175, 268, 357
Hpy188III	TCNNGA	3 cut(s)	97, 215, 413
Hpy8I	GTNNAC	3 cut(s)	12, 301, 439
HpyAV	CCTTC	4 cut(s)	31, 338, 464, 544
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	3 cut(s)	30, 479, 669
HpyF3I	CTNAG	1 cut(s)	661
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	2 cut(s)	307, 503
HspAI	GCGC	2 cut(s)	272, 381
Kpn2I	TCCGGA	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	201, 352
LmnI	GCTCC	4 cut(s)	108, 217, 284, 634
Lsp1109I	GCAGC	1 cut(s)	605
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	275, 413
MalI	GATC	2 cut(s)	203, 354
MboI	GATC	2 cut(s)	201, 352
MboII	GAAGA	7 cut(s)	163, 196, 251, 338, 458, 535, 662
MhlI	GDGCHC	3 cut(s)	113, 200, 289
MluCI	AATT	3 cut(s)	360, 568, 574
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	153
MroI	TCCGGA	1 cut(s)	96
MseI	TTAA	2 cut(s)	47, 519
MspA1I	CMGCKG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	3 cut(s)	193, 274, 383
NdeII	GATC	2 cut(s)	201, 352
NlaIII	CATG	2 cut(s)	307, 503
NlaIV	GGNNCC	1 cut(s)	630
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	2 cut(s)	275, 413
PcsI	WCGNNNNNNNCGW	3 cut(s)	197, 396, 402
PkrI	GCNGC	2 cut(s)	40, 595
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Ppu21I	YACGTR	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	4 cut(s)	225, 318, 581, 657
RsaNI	GTAC	4 cut(s)	224, 317, 580, 656
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	47, 519
SatI	GCNGC	2 cut(s)	39, 594
Sau3AI	GATC	2 cut(s)	201, 352
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	1 cut(s)	441
SduI	GDGCHC	3 cut(s)	113, 200, 289
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	360, 568, 574
SsiI	CCGC	6 cut(s)	39, 84, 193, 282, 368, 538
SstI	GAGCTC	1 cut(s)	113
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	4 cut(s)	67, 200, 234, 246
TasI	AATT	3 cut(s)	360, 568, 574
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	47, 519
Tru9I	TTAA	2 cut(s)	47, 519
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	275, 413
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	2 cut(s)	275, 413
TspDTI	ATGAA	2 cut(s)	252, 345
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.