RLG00000008857

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001849
Physical Location & Seq
Reverse (-)
41232355 .. 41232818
464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008857

Sequence Viewer

Length: 339 bp
ATGGACCTCACCGAGCTCACACCCACCGTGGCCATGCTCGCCGATAAGGCGAGATTGACGCTCAAGCACCTGGAAGTGCGTGACGGTAGAGCGCACCCAAGAGTCGACGTGGGAGGTGTAATACTGGTAGAAGATGAAAGAGAGGCGGAAGGTTTTGATTGGAGAATTGGGGCAGAGAATGAGAGCGCGGTTGACGAACTCGGCGAAGCCGTGGCTAGTGATGGGGAGGGGTTTGGCGTCGTTGACCGGGAAGAGGTGGTAGGAGAAGTCGAGGAAGGGGAGACGGGACCAGAGGGATCGCCATTGGTGGGAGACGAGGGAGTTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.87

Weight (kDa)

4.07

Isoelectric Point (pI)

13.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 188
AciI CCGC 2 cut(s) 146, 188
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 253, 308
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 275, 306
AlwI GGATC 1 cut(s) 304
AoxI GGCC 2 cut(s) 30, 331
AspLEI GCGC 2 cut(s) 94, 188
AspS9I GGNCC 2 cut(s) 4, 287
AsuC2I CCSGG 1 cut(s) 248
AvaII GGWCC 2 cut(s) 4, 287
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 2 cut(s) 215, 323
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 275, 306
BfaI CTAG 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 71, 248
Bme18I GGWCC 2 cut(s) 4, 287
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 4, 287
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 2 cut(s) 71, 248
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 27, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 308
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 27, 210
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 253, 308
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 32, 333
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 253, 308
BsmAI GTCTC 2 cut(s) 275, 306
BsmBI CGTCTC 2 cut(s) 275, 306
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 2 cut(s) 32, 333
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 2 cut(s) 146, 188
BspANI GGCC 2 cut(s) 32, 333
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 27, 210
BssMI GATC 1 cut(s) 296
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 28, 86
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 39
BstDSI CCRYGG 2 cut(s) 27, 210
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 2 cut(s) 94, 188
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 2 cut(s) 275, 306
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 69, 246
BstUI CGCG 1 cut(s) 188
BsuRI GGCC 2 cut(s) 32, 333
BtgI CCRYGG 2 cut(s) 27, 210
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 2 cut(s) 94, 188
Cfr13I GGNCC 2 cut(s) 4, 287
CseI GACGC 2 cut(s) 67, 226
CviAII CATG 1 cut(s) 34
CviJI RGCY 5 cut(s) 16, 32, 209, 215, 333
CviKI_1 RGCY 5 cut(s) 16, 32, 209, 215, 333
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 4, 287
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 2 cut(s) 275, 306
FaeI CATG 1 cut(s) 37
FaiI YATR 1 cut(s) 35
FaqI GGGAC 1 cut(s) 300
FatI CATG 1 cut(s) 33
FblI GTMKAC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 18
FspBI CTAG 1 cut(s) 216
GlaI GCGC 2 cut(s) 93, 187
HaeIII GGCC 2 cut(s) 32, 333
HapII CCGG 1 cut(s) 247
HgaI GACGC 2 cut(s) 67, 226
HhaI GCGC 2 cut(s) 94, 188
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 2 cut(s) 92, 186
HinP1I GCGC 2 cut(s) 92, 186
HincII GTYRAC 3 cut(s) 106, 193, 244
HindII GTYRAC 3 cut(s) 106, 193, 244
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 247
Hpy166II GTNNAC 3 cut(s) 106, 193, 244
Hpy8I GTNNAC 3 cut(s) 106, 193, 244
Hpy99I CGWCG 2 cut(s) 110, 242
HpyAV CCTTC 2 cut(s) 143, 269
HpyCH4III ACNGT 2 cut(s) 28, 86
HpyCH4IV ACGT 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 2 cut(s) 92, 186
Kzo9I GATC 1 cut(s) 296
LpnPI CCDG 5 cut(s) 56, 83, 110, 260, 303
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 2 cut(s) 143, 263
MhlI GDGCHC 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 8 cut(s) 17, 107, 136, 220, 247, 265, 286, 310
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 71, 248
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NciI CCSGG 1 cut(s) 248
NdeII GATC 1 cut(s) 296
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 207
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 4, 287
SacI GAGCTC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 2 cut(s) 4, 287
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 71, 248
SduI GDGCHC 1 cut(s) 18
SetI ASST 7 cut(s) 9, 18, 72, 111, 118, 154, 258
SinI GGWCC 2 cut(s) 4, 287
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 165
SsiI CCGC 2 cut(s) 146, 188
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 69, 246
TaaI ACNGT 2 cut(s) 28, 86
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 105, 270
TasI AATT 1 cut(s) 165
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 4, 287
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.