Rh7DG461900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001849
Physical Location & Seq
Reverse (-)
65814664 .. 65814975
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG461900.1

Sequence Viewer

Length: 312 bp
ATGGTACTCTGTGTCGATGAAGAAGTCGAGGTCGAGCTTATGCGCTCGGAAGCGCATGACGGCGGAGCGCACCCAGAAGTCGACGTGGGAGGTGTAGTAGTGGTAGAAGATGAAGGAGAGGCAGAAGGCTTTGATCGGAGAATTGGGGTGGAGGATGATAGAGCGGTCGACGAACTCGGCGAAGCGGTGGCTTGTGACGGGAAGAGGTTCGGATTCATTGACCGGGAAAAGGTGGTATGGGAGGTCGAGGAGGGGGAGACGGGACCAGAGAGATCGTCATTGGCGGGACACGATATTGTGGATGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.15

Weight (kDa)

4.1

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 164
AccI GTMKAC 2 cut(s) 81, 168
AciI CCGC 4 cut(s) 63, 164, 185, 284
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 229
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 251
AoxI GGCC 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 45, 55, 70
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 263
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 76
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 160, 307
BseLI CCNNNNNNNGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 2 cut(s) 276, 300
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 2 cut(s) 276, 300
BsnI GGCC 1 cut(s) 306
Bsp143I GATC 2 cut(s) 133, 272
BspACI CCGC 4 cut(s) 63, 164, 185, 284
BspANI GGCC 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 264
BsrBI CCGCTC 1 cut(s) 164
BssMI GATC 2 cut(s) 133, 272
Bst6I CTCTTC 1 cut(s) 197
BstF5I GGATG 2 cut(s) 160, 307
BstHHI GCGC 3 cut(s) 45, 55, 70
BstKTI GATC 2 cut(s) 136, 275
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 133, 272
BstMCI CGRYCG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 306
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 160, 307
CfoI GCGC 3 cut(s) 45, 55, 70
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 5
CviAII CATG 1 cut(s) 56
CviJI RGCY 4 cut(s) 37, 129, 191, 306
CviKI_1 RGCY 4 cut(s) 37, 129, 191, 306
CviQI GTAC 1 cut(s) 5
DpnI GATC 2 cut(s) 135, 274
DpnII GATC 2 cut(s) 133, 272
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 41, 57, 238
FaqI GGGAC 2 cut(s) 276, 300
FatI CATG 1 cut(s) 55
FauI CCCGC 1 cut(s) 277
FblI GTMKAC 2 cut(s) 81, 168
FokI GGATG 1 cut(s) 167
GlaI GCGC 3 cut(s) 44, 54, 69
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 223
HhaI GCGC 3 cut(s) 45, 55, 70
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 3 cut(s) 43, 53, 68
HinP1I GCGC 3 cut(s) 43, 53, 68
HincII GTYRAC 2 cut(s) 82, 169
HindII GTYRAC 2 cut(s) 82, 169
HinfI GANTC 1 cut(s) 213
HpaII CCGG 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 82, 169
Hpy188I TCNGA 3 cut(s) 49, 138, 212
Hpy8I GTNNAC 2 cut(s) 82, 169
Hpy99I CGWCG 2 cut(s) 86, 173
HpyAV CCTTC 2 cut(s) 107, 119
HpyCH4IV ACGT 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 3 cut(s) 43, 53, 68
Kzo9I GATC 2 cut(s) 133, 272
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 3 cut(s) 87, 236, 279
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 135, 274
MbiI CCGCTC 1 cut(s) 164
MboI GATC 2 cut(s) 133, 272
MboII GAAGA 3 cut(s) 32, 119, 214
MluCI AATT 1 cut(s) 141
MnlI CCTC 8 cut(s) 22, 83, 112, 145, 198, 235, 241, 244
MroXI GAANNNNTTC 1 cut(s) 206
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 224
NciI CCSGG 1 cut(s) 224
NdeII GATC 2 cut(s) 133, 272
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SalI GTCGAC 2 cut(s) 80, 167
Sau3AI GATC 2 cut(s) 133, 272
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 224
SetI ASST 7 cut(s) 33, 39, 87, 94, 209, 234, 246
SinI GGWCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 141
SsiI CCGC 4 cut(s) 63, 164, 185, 284
StyD4I CCNGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 87
TaqI TCGA 6 cut(s) 15, 27, 33, 81, 168, 246
TasI AATT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 213
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 33, 126, 205
VpaK11BI GGWCC 1 cut(s) 263
XmiI GTMKAC 2 cut(s) 81, 168
XmnI GAANNNNTTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.