Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001849

Physical Location & Seq

Genomic Coordinates Forward (+)

27321481 .. 27332848

Gene Structure 11368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTCAGGTTGCCCTAAAAGCAAAGGTTTTACGTGACGGAACATGGACAGAAGAATATGCAGCTACATTGGTTCCTGGAGATATAATTAGCATCAAACTTGGTGATATCATTCTAGCTGATGCACGTCTCCTTGAAGGAGATCCTTTAAAGATTGATGGGTCCTGCTTATCGAAGATTCCAAGCCTCAGCTTTGTTGGGATTGCATCTCTTTGGAACCTGGAATTGGTCTTGAACATTCCTCCACCTCCAAGTTTAATGTGGCTACTTGGGAGGCCTGCAAATGCTTTGTATATTTTTCTTCTCTGCTTTGATCTCAATGTTGCCTTGCAGATTCTAAACACCAGAGTCCAGACACCCTGCAAATCGTCACCCCACGAGAGGCAGTCATGCTTGAAGCTTCAACATATCTTCTGGGATTGCTCTGGTTTCTTCCATCCTTTGTGGCAATTGGACTTCTTCATTCACGTATTGAGCATAATTCTTAGGGCTGGGGGCGGTCCGGTCCGGTCCGGTCCGGTCCTAGTTTTAGGGGAATCTGAGATCGAACCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008553 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043492 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

186

Amino Acids

20.39

Weight (kDa)

5.54

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	6 - 57	8.3e-10	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001849)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342981 RchiOBHm_Chr5g0007961
rosa_laevigata	RLG00000001720 RLG00000005133 RLG00000008857 RLG00000014510 RLG00000018028 RLG00000018970 RLG00000019803 RLG00000022600 RLG00000028537 RLG00000028743 RLG00000029184 RLG00000029199 RLG00000033889
rosa_multiflora	Rmu_sc0004928.1_g000017
rosa_roxburghii	Rroxscaffold_7G00195360 Rroxscaffold_7G00215600
rosa_rugosa	Rorug06G0149300
rosa_samantha	Rh1AG012000 Rh1AG077100 Rh2AG113100 Rh2AG582800 Rh2BG087500 Rh2BG116100 Rh2CG089900 Rh2CG118100 Rh2CG169200 Rh2DG117200 Rh2DG573900 Rh3BG109000 Rh3BG295200 Rh3CG110500 Rh3DG104300 Rh3DG192500 Rh3DG268800 Rh4CG042900 Rh5BG251400 Rh5DG259400 Rh6CG266900 Rh7AG157100 Rh7AG476600 Rh7BG447900 Rh7CG094400 Rh7CG495000 Rh7DG461900
rosa_wichuraiana	Rw7G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	498
AclWI	GGATC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	226, 381
AgsI	TTSAA	4 cut(s)	137, 235, 397, 404
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	76, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	4 cut(s)	65, 119, 192, 400
AluI	AGCT	4 cut(s)	65, 119, 192, 400
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	62
AspS9I	GGNCC	6 cut(s)	162, 500, 505, 510, 515, 520
AsuHPI	GGTGA	2 cut(s)	116, 363
AvaII	GGWCC	6 cut(s)	162, 500, 505, 510, 515, 520
BauI	CACGAG	1 cut(s)	377
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	152, 444
BciT130I	CCWGG	2 cut(s)	78, 221
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	116, 524
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	78, 221
Bme18I	GGWCC	6 cut(s)	162, 500, 505, 510, 515, 520
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	6 cut(s)	162, 500, 505, 510, 515, 520
BmiI	GGNNCC	3 cut(s)	75, 163, 218
BmrFI	CCNGG	2 cut(s)	78, 221
BmsI	GCATC	3 cut(s)	102, 112, 215
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	2 cut(s)	6, 188
BsaAI	YACGTR	2 cut(s)	35, 469
BsaWI	WCCGGW	4 cut(s)	502, 507, 512, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 381
BseBI	CCWGG	2 cut(s)	78, 221
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	2 cut(s)	226, 381
BseMII	CTCAG	4 cut(s)	20, 202, 531, 543
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	491
BshFI	GGCC	1 cut(s)	277
BsiSI	CCGG	4 cut(s)	503, 508, 513, 518
BslI	CCNNNNNNNGG	2 cut(s)	226, 381
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	142, 313, 543
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	4 cut(s)	19, 201, 532, 544
BspLI	GGNNCC	3 cut(s)	75, 163, 218
BspPI	GGATC	1 cut(s)	137
BssMI	GATC	3 cut(s)	142, 313, 543
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	78, 221
BstBAI	YACGTR	2 cut(s)	35, 469
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	5 cut(s)	6, 188, 485, 540, 552
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	3 cut(s)	145, 316, 546
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	142, 313, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstNI	CCWGG	2 cut(s)	78, 221
BstSCI	CCNGG	2 cut(s)	76, 219
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	279
Cfr13I	GGNCC	6 cut(s)	162, 500, 505, 510, 515, 520
CpoI	CGGWCCG	4 cut(s)	500, 505, 510, 515
CspI	CGGWCCG	4 cut(s)	500, 505, 510, 515
CviAII	CATG	2 cut(s)	45, 390
CviJI	RGCY	9 cut(s)	5, 65, 119, 186, 192, 265, 277, 400, 491
CviKI_1	RGCY	9 cut(s)	5, 65, 119, 186, 192, 265, 277, 400, 491
DdeI	CTNAG	5 cut(s)	6, 188, 485, 540, 552
DpnI	GATC	3 cut(s)	144, 315, 545
DpnII	GATC	3 cut(s)	142, 313, 543
DraI	TTTAAA	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	6 cut(s)	162, 500, 505, 510, 515, 520
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	76, 219
EcoRV	GATATC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	2 cut(s)	48, 393
FaiI	YATR	7 cut(s)	46, 60, 86, 294, 391, 408, 479
FatI	CATG	2 cut(s)	44, 389
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	116, 524
GluI	GCNGC	1 cut(s)	63
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	4 cut(s)	503, 508, 513, 518
Hin1II	CATG	2 cut(s)	48, 393
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	4 cut(s)	178, 334, 348, 536
HpaII	CCGG	4 cut(s)	503, 508, 513, 518
HphI	GGTGA	2 cut(s)	116, 363
Hpy188I	TCNGA	1 cut(s)	541
Hpy188III	TCNNGA	2 cut(s)	232, 352
HpyAV	CCTTC	1 cut(s)	131
HpyCH4IV	ACGT	3 cut(s)	34, 127, 468
HpyCH4V	TGCA	6 cut(s)	62, 125, 206, 281, 331, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
HpyF3I	CTNAG	5 cut(s)	6, 188, 485, 540, 552
HpySE526I	ACGT	3 cut(s)	34, 127, 468
Hsp92II	CATG	2 cut(s)	48, 393
Kzo9I	GATC	3 cut(s)	142, 313, 543
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	3 cut(s)	102, 112, 215
MaeI	CTAG	2 cut(s)	116, 524
MaeII	ACGT	3 cut(s)	34, 127, 468
MaeIII	GTNAC	2 cut(s)	35, 369
MalI	GATC	3 cut(s)	144, 315, 545
MboI	GATC	3 cut(s)	142, 313, 543
MboII	GAAGA	6 cut(s)	65, 187, 293, 403, 424, 451
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	4 cut(s)	87, 224, 449, 480
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	197, 252, 258, 267, 375
MseI	TTAA	2 cut(s)	149, 257
MspI	CCGG	4 cut(s)	503, 508, 513, 518
MspR9I	CCNGG	2 cut(s)	78, 221
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	2 cut(s)	78, 221
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NdeII	GATC	3 cut(s)	142, 313, 543
NlaIII	CATG	2 cut(s)	48, 393
NlaIV	GGNNCC	3 cut(s)	75, 163, 218
NmuCI	GTSAC	2 cut(s)	35, 369
PceI	AGGCCT	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	178, 334, 536
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	2 cut(s)	35, 469
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	76, 219
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	76, 219
PspN4I	GGNNCC	3 cut(s)	75, 163, 218
PspPI	GGNCC	6 cut(s)	162, 500, 505, 510, 515, 520
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	142
Rsr2I	CGGWCCG	4 cut(s)	500, 505, 510, 515
RsrII	CGGWCCG	4 cut(s)	500, 505, 510, 515
SaqAI	TTAA	2 cut(s)	149, 257
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	142, 313, 543
Sau96I	GGNCC	6 cut(s)	162, 500, 505, 510, 515, 520
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	78, 221
SfaNI	GCATC	3 cut(s)	102, 112, 215
SinI	GGWCC	6 cut(s)	162, 500, 505, 510, 515, 520
Sse9I	AATT	4 cut(s)	87, 224, 449, 480
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	1 cut(s)	498
SspMI	CTAG	2 cut(s)	116, 524
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	76, 219
TaiI	ACGT	3 cut(s)	37, 130, 471
TaqI	TCGA	2 cut(s)	173, 546
TasI	AATT	4 cut(s)	87, 224, 449, 480
TfiI	GAWTC	3 cut(s)	178, 334, 536
Tru1I	TTAA	2 cut(s)	149, 257
Tru9I	TTAA	2 cut(s)	149, 257
TseFI	GTSAC	2 cut(s)	35, 369
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	35, 369
TspDTI	ATGAA	1 cut(s)	451
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	6 cut(s)	162, 500, 505, 510, 515, 520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XspI	CTAG	2 cut(s)	116, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.