Rh2CG169200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001849
Physical Location & Seq
Forward (+)
15105081 .. 15105575
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG169200.1

Sequence Viewer

Length: 495 bp
ATGGCCAATGTGATTGCAACATGGTCTCCAAGCTCTCTCCAGCTTCGTTGGACTCTGAATTCCGATAATTACAGTAAACCTTCGCCCAATTTTGGTGAGGATACGTCGGGTTTGAGTGCTATGTGTTGCTCTGGACACAGGGAGGAGTGCTGGGCTCTGTGTTGCTTCGTTGAGCTCTGTCTTCCAAGGTTGCCACGAACGACACCGCCACCACCAACCCTGCAGGCCGCCACCGTTGCTACTACCCCCAGTTCACGGTCACAGCGCGGCCGCAATGGGAGTTCGTGGGTCGAATCCAAGCCGGGTACTGCTGATGGGTTATCCTGGTGGTCCGATTTGGAAGAGAGCGCGATCGATGAAGTCAACGAAGAATTCAGCTTGGGCCTGTGTTGGGTTGAGATCGAATTTGGGGGCCGGAGGGAAGAGGTGGTAGGAGAAGTTCAAGGAGGGAACGAGGGACTAGAGGGAGGAGGATATCTTCTGGGAGGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLH

Protein Analysis

164

Amino Acids

17.76

Weight (kDa)

4.53

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 267, 350
AciI CCGC 4 cut(s) 206, 228, 267, 271
AcoI YGGCCR 2 cut(s) 3, 268
AcsI RAATTY 3 cut(s) 58, 371, 404
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 3 cut(s) 92, 255, 391
AgsI TTSAA 1 cut(s) 443
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 4 cut(s) 33, 43, 175, 378
AluI AGCT 4 cut(s) 33, 43, 175, 378
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 5 cut(s) 3, 225, 268, 382, 412
ApoI RAATTY 3 cut(s) 58, 371, 404
AspLEI GCGC 2 cut(s) 267, 350
AspS9I GGNCC 3 cut(s) 330, 382, 412
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 330
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 157, 177
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 325
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 3 cut(s) 228, 268, 271
BlsI GCNGC 3 cut(s) 229, 269, 272
Bme1390I CCNGG 2 cut(s) 303, 325
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 330, 382, 412
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 2 cut(s) 303, 325
BmrI ACTGGG 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 255, 391
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 325
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 92, 255, 391
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 158, 483
BseX3I CGGCCG 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 2 cut(s) 267, 350
Bsh1285I CGRYCG 2 cut(s) 271, 354
BshFI GGCC 5 cut(s) 5, 227, 270, 384, 414
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 2 cut(s) 271, 354
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 2 cut(s) 302, 415
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 3 cut(s) 92, 255, 391
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 5 cut(s) 5, 227, 270, 384, 414
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 157, 177
Bsp143I GATC 2 cut(s) 351, 399
BspACI CCGC 4 cut(s) 206, 228, 267, 271
BspANI GGCC 5 cut(s) 5, 227, 270, 384, 414
BspDI ATCGAT 1 cut(s) 354
BspFNI CGCG 2 cut(s) 267, 350
BspLI GGNNCC 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 2 cut(s) 351, 399
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 3 cut(s) 74, 235, 258
Bst6I CTCTTC 2 cut(s) 336, 417
BstC8I GCNNGC 1 cut(s) 225
BstFNI CGCG 2 cut(s) 267, 350
BstHHI GCGC 2 cut(s) 267, 350
BstKTI GATC 2 cut(s) 354, 402
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 351, 399
BstMCI CGRYCG 2 cut(s) 271, 354
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 301, 323
BstSFI CTRYAG 1 cut(s) 221
BstUI CGCG 2 cut(s) 267, 350
BstV2I GAAGAC 1 cut(s) 173
BstZI CGGCCG 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 354
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 5 cut(s) 5, 227, 270, 384, 414
BsuTUI ATCGAT 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 225
CciNI GCGGCCGC 1 cut(s) 268
CfoI GCGC 2 cut(s) 267, 350
Cfr13I GGNCC 3 cut(s) 330, 382, 412
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 1 cut(s) 306
CviAII CATG 1 cut(s) 21
CviQI GTAC 1 cut(s) 306
DpnI GATC 2 cut(s) 353, 401
DpnII GATC 2 cut(s) 351, 399
EaeI YGGCCR 2 cut(s) 3, 268
EagI CGGCCG 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 336, 417
EarI CTCTTC 2 cut(s) 336, 417
Ecl136II GAGCTC 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 185
Eco24I GRGCYC 2 cut(s) 157, 177
Eco31I GGTCTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 330
Eco52I CGGCCG 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRI GAATTC 2 cut(s) 58, 371
EcoRII CCWGG 1 cut(s) 323
EcoRV GATATC 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 185
EcoT38I GRGCYC 2 cut(s) 157, 177
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 1 cut(s) 24
FaiI YATR 2 cut(s) 22, 122
FaqI GGGAC 1 cut(s) 471
FatI CATG 1 cut(s) 20
Fnu4HI GCNGC 3 cut(s) 228, 268, 271
FriOI GRGCYC 2 cut(s) 157, 177
Fsp4HI GCNGC 3 cut(s) 228, 268, 271
FspBI CTAG 1 cut(s) 461
GlaI GCGC 2 cut(s) 266, 349
GluI GCNGC 3 cut(s) 228, 268, 271
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 5 cut(s) 5, 227, 270, 384, 414
HapII CCGG 2 cut(s) 302, 415
HhaI GCGC 2 cut(s) 267, 350
Hin1II CATG 1 cut(s) 24
Hin6I GCGC 2 cut(s) 265, 348
HinP1I GCGC 2 cut(s) 265, 348
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 2 cut(s) 52, 293
HpaII CCGG 2 cut(s) 302, 415
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 3 cut(s) 77, 254, 364
Hpy188I TCNGA 3 cut(s) 57, 64, 334
Hpy188III TCNNGA 1 cut(s) 132
Hpy8I GTNNAC 3 cut(s) 77, 254, 364
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 74, 235, 258
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 17, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 24
HspAI GCGC 2 cut(s) 265, 348
Kzo9I GATC 2 cut(s) 351, 399
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 258
MalI GATC 2 cut(s) 353, 401
MboI GATC 2 cut(s) 351, 399
MboII GAAGA 5 cut(s) 173, 353, 380, 434, 470
MhlI GDGCHC 2 cut(s) 157, 177
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 58, 67, 88, 371, 404
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 302, 415
MspR9I CCNGG 2 cut(s) 303, 325
MvaI CCWGG 1 cut(s) 325
MvnI CGCG 2 cut(s) 267, 350
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 303
NdeII GATC 2 cut(s) 351, 399
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 1 cut(s) 258
NotI GCGGCCGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 229, 269, 272
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 3 cut(s) 330, 382, 412
PsrI GAACNNNNNNTAC 2 cut(s) 423, 455
PstI CTGCAG 1 cut(s) 225
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SacI GAGCTC 1 cut(s) 177
SatI GCNGC 3 cut(s) 228, 268, 271
Sau3AI GATC 2 cut(s) 351, 399
Sau96I GGNCC 3 cut(s) 330, 382, 412
SbfI CCTGCAGG 1 cut(s) 225
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 303, 325
SdaI CCTGCAGG 1 cut(s) 225
SduI GDGCHC 2 cut(s) 157, 177
SetI ASST 9 cut(s) 35, 45, 82, 107, 177, 191, 380, 429, 490
SfcI CTRYAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 330
Sse8387I CCTGCAGG 1 cut(s) 225
Sse9I AATT 5 cut(s) 58, 67, 88, 371, 404
SsiI CCGC 4 cut(s) 206, 228, 267, 271
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 301, 323
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 74, 235, 258
TaiI ACGT 1 cut(s) 107
TaqI TCGA 3 cut(s) 291, 354, 402
TasI AATT 5 cut(s) 58, 67, 88, 371, 404
TauI GCSGC 3 cut(s) 230, 270, 273
TfiI GAWTC 1 cut(s) 293
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 3 cut(s) 58, 371, 404
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.