Rh3DG268800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001849
Physical Location & Seq
Forward (+)
26883870 .. 26884247
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG268800.1

Sequence Viewer

Length: 378 bp
ATGGACCTCACTGAGCTCACACCCACAGTGGCCATGCTCGCCTGCAACGCGAGATCGACTGGTGAGCCTCTCAACACAGCCTTTTCTCAGCACAGAGAAAGGGAAATCATACTTGTCACGCGGGGCTCGATCTTCCTCGCTCCAGAGATGGTACTCTTTGTCGATGAAGAAGTCGAGGTCAGGCTCACGCACCAGGAAGCGGGTGACGGTGGAGCGCACCCAAGGGTCGACGTGGGAGGTGTAGTACTGGTAGAAGATGAAAGAGAGGCGGAAGGTTTTGATAGGAGAATTGGGGCGAACAATGAGAGAGCGGTTGACGAACTCAGCGAAGCCGTGGCTCGTGACTGGGAGGGGTTCGGCGTCGTTGACCGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.79

Weight (kDa)

4.46

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 228
AccII CGCG 2 cut(s) 50, 121
AciI CCGC 4 cut(s) 121, 200, 269, 311
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 153, 246
AfiI CCNNNNNNNGG 1 cut(s) 199
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 18
AoxI GGCC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 74, 215
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 2 cut(s) 18, 128
BauI CACGAG 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 1 cut(s) 371
BmcAI AGTACT 1 cut(s) 246
Bme1390I CCNGG 2 cut(s) 194, 371
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 194, 371
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 221, 333
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 3 cut(s) 64, 252, 350
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 221, 333
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 101, 337
BseNI ACTGG 3 cut(s) 64, 252, 350
Bsh1236I CGCG 2 cut(s) 50, 121
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 18, 128
Bsp143I GATC 2 cut(s) 53, 129
BspACI CCGC 4 cut(s) 121, 200, 269, 311
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 3 cut(s) 4, 100, 336
BspFNI CGCG 2 cut(s) 50, 121
BsrBI CCGCTC 1 cut(s) 311
BsrI ACTGG 3 cut(s) 64, 252, 350
BssECI CCNNGG 2 cut(s) 221, 333
BssMI GATC 2 cut(s) 53, 129
BssNI GRCGYC 1 cut(s) 360
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 28, 209
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 39, 43
BstDEI CTNAG 3 cut(s) 12, 87, 323
BstDSI CCRYGG 1 cut(s) 333
BstFNI CGCG 2 cut(s) 50, 121
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 56, 132
BstMBI GATC 2 cut(s) 53, 129
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 192, 369
BstUI CGCG 2 cut(s) 50, 121
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 9, 33
Cac8I GCNNGC 2 cut(s) 39, 43
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 349
Csp6I GTAC 2 cut(s) 152, 245
CviAII CATG 1 cut(s) 34
CviJI RGCY 8 cut(s) 16, 32, 67, 80, 126, 184, 332, 338
CviKI_1 RGCY 8 cut(s) 16, 32, 67, 80, 126, 184, 332, 338
CviQI GTAC 2 cut(s) 152, 245
DdeI CTNAG 3 cut(s) 12, 87, 323
DpnI GATC 2 cut(s) 55, 131
DpnII GATC 2 cut(s) 53, 129
EaeI YGGCCR 1 cut(s) 30
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 2 cut(s) 18, 128
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 2 cut(s) 18, 128
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 37
FaiI YATR 2 cut(s) 35, 110
FatI CATG 1 cut(s) 33
FauI CCCGC 2 cut(s) 114, 193
FblI GTMKAC 1 cut(s) 228
FriOI GRGCYC 2 cut(s) 18, 128
GlaI GCGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 32
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 3 cut(s) 229, 316, 367
HindII GTYRAC 3 cut(s) 229, 316, 367
HpaII CCGG 1 cut(s) 370
HphI GGTGA 2 cut(s) 74, 215
Hpy166II GTNNAC 3 cut(s) 229, 316, 367
Hpy188III TCNNGA 2 cut(s) 143, 341
Hpy8I GTNNAC 3 cut(s) 229, 316, 367
Hpy99I CGWCG 2 cut(s) 233, 365
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 28, 209
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 3 cut(s) 12, 87, 323
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 53, 129
LmnI GCTCC 2 cut(s) 145, 212
LpnPI CCDG 8 cut(s) 45, 55, 156, 166, 179, 206, 233, 331
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 115, 203, 341
MalI GATC 2 cut(s) 55, 131
MbiI CCGCTC 1 cut(s) 311
MboI GATC 2 cut(s) 53, 129
MboII GAAGA 3 cut(s) 124, 179, 266
MhlI GDGCHC 2 cut(s) 18, 128
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 288
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 7 cut(s) 17, 78, 146, 169, 230, 259, 343
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 2 cut(s) 194, 371
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 2 cut(s) 50, 121
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NciI CCSGG 1 cut(s) 371
NdeII GATC 2 cut(s) 53, 129
NlaIII CATG 1 cut(s) 37
NmuCI GTSAC 3 cut(s) 115, 203, 341
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 324
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 153, 246
RsaNI GTAC 2 cut(s) 152, 245
SacI GAGCTC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 53, 129
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 194, 371
SduI GDGCHC 2 cut(s) 18, 128
SetI ASST 6 cut(s) 9, 18, 180, 234, 241, 277
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 288
SsiI CCGC 4 cut(s) 121, 200, 269, 311
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 192, 369
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 28, 209
TaiI ACGT 1 cut(s) 234
TaqI TCGA 5 cut(s) 56, 128, 162, 174, 228
TasI AATT 1 cut(s) 288
TatI WGTACW 1 cut(s) 244
TscAI CASTG 2 cut(s) 16, 33
TseFI GTSAC 3 cut(s) 115, 203, 341
Tsp45I GTSAC 3 cut(s) 115, 203, 341
TspDTI ATGAA 2 cut(s) 180, 273
TspRI CASTG 2 cut(s) 16, 33
VpaK11BI GGWCC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.