Rh7AG157100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001849
Physical Location & Seq
Reverse (-)
12799823 .. 12801305
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG157100.1

Sequence Viewer

Length: 312 bp
ATGCTTAATTCTAAAAGGACCCTCACACCTTTTAACTTGTTCTCACCACTTGAGATTGACCGAGCACCGATGCAATTAAACTTTTTCAATTACACCACCGATTCAATTGCATGCTTTATGTCTCTTTTCAAAGGCCTGGACTTTGGCTTTTGGCCTTTTGCCATTCAATTCCTATTTCAGAACAAAGCTACAACATACTTTTTCATGCCTTTAATTAATACAAATAGACTCAAGTGTTTGTCTCTTGCATTTGATAATCAATTATACATGTCTGCAGCACACATGATCAATTACATATTTTGGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.21

Weight (kDa)

9.06

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 4 cut(s) 88, 105, 130, 167
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 2 cut(s) 188, 307
AluI AGCT 2 cut(s) 188, 307
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 126, 246
AoxI GGCC 2 cut(s) 133, 152
ApeKI GCWGC 1 cut(s) 275
AseI ATTAAT 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 36
AvaII GGWCC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 126, 246
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 71, 215
BseBI CCWGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 2 cut(s) 135, 154
BsiHKAI GWGCWC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 126, 246
BsnI GGCC 2 cut(s) 135, 154
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 285
BspANI GGCC 2 cut(s) 135, 154
BspLI GGNNCC 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 277
BssMI GATC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 2 cut(s) 126, 246
BstMBI GATC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 137
BstNSI RCATGY 2 cut(s) 114, 271
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 287
BsuRI GGCC 2 cut(s) 135, 154
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 18
CviAII CATG 4 cut(s) 111, 205, 268, 283
CviJI RGCY 5 cut(s) 135, 147, 154, 188, 307
CviKI_1 RGCY 5 cut(s) 135, 147, 154, 188, 307
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 4 cut(s) 114, 208, 271, 286
FaiI YATR 8 cut(s) 112, 119, 196, 206, 265, 269, 284, 296
FatI CATG 4 cut(s) 110, 204, 267, 282
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 2 cut(s) 135, 154
Hin1II CATG 4 cut(s) 114, 208, 271, 286
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 101, 228
HphI GGTGA 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 73, 110, 248, 275
Hsp92II CATG 4 cut(s) 114, 208, 271, 286
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 1 cut(s) 285
LpnPI CCDG 2 cut(s) 122, 149
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 60
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 8 cut(s) 7, 74, 88, 105, 167, 213, 260, 289
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 1 cut(s) 32
MseI TTAA 5 cut(s) 6, 33, 77, 212, 216
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 137
NdeII GATC 1 cut(s) 285
NlaIII CATG 4 cut(s) 114, 208, 271, 286
NlaIV GGNNCC 1 cut(s) 20
NspI RCATGY 2 cut(s) 114, 271
PacI TTAATTAA 1 cut(s) 216
PaeI GCATGC 1 cut(s) 114
PceI AGGCCT 1 cut(s) 135
PciI ACATGT 1 cut(s) 267
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 18
PscI ACATGT 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 18
PspPPI RGGWCCY 1 cut(s) 18
PstI CTGCAG 1 cut(s) 277
SaqAI TTAA 5 cut(s) 6, 33, 77, 212, 216
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 67
SetI ASST 3 cut(s) 31, 190, 309
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 50, 230
SmoI CTYRAG 2 cut(s) 50, 230
SphI GCATGC 1 cut(s) 114
Sse9I AATT 8 cut(s) 7, 74, 88, 105, 167, 213, 260, 289
SseBI AGGCCT 1 cut(s) 135
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 135
TaqII GACCGA 1 cut(s) 75
TasI AATT 8 cut(s) 7, 74, 88, 105, 167, 213, 260, 289
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 5 cut(s) 6, 33, 77, 212, 216
Tru9I TTAA 5 cut(s) 6, 33, 77, 212, 216
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 18
VspI ATTAAT 1 cut(s) 216
XceI RCATGY 2 cut(s) 114, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.