Rh7AG476600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001849
Physical Location & Seq
Reverse (-)
66742907 .. 66743173
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG476600.1

Sequence Viewer

Length: 267 bp
ATGGTACTCTGTGTCGATGAAGAAGTCGAGGTTGAGCTGATGCGCCCAGAAGTGCGTGACAGTGGAGCGCACCCAGGAGTCGACATGGGAGGTGTAGTAGTGGTAGAAAATGAAGGAGAGGCAGAAGGTTTTGATCGGAGAATTGGGGCGGAGGATGATAGCGCGGTCGACGAACTCGGCGAAGCGGGGGCTTGTGATGGGGAGAGGTTCGGATTCGTTGACCGGGAAAAGGTGGTAAGAGAGGTCGAGGAGGGGGAGACGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.47

Weight (kDa)

4.05

Isoelectric Point (pI)

24.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 81, 168
AccII CGCG 1 cut(s) 164
AciI CCGC 3 cut(s) 149, 164, 185
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 229
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 251
AspLEI GCGC 3 cut(s) 45, 70, 164
AsuC2I CCSGG 1 cut(s) 224
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 75, 224
BmrFI CCNGG 2 cut(s) 75, 224
BmsI GCATC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 3 cut(s) 149, 164, 185
BspFNI CGCG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 62
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 164
BstHHI GCGC 3 cut(s) 45, 70, 164
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 133
BstMCI CGRYCG 1 cut(s) 168
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 222
BstUI CGCG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 67
CfoI GCGC 3 cut(s) 45, 70, 164
Csp6I GTAC 1 cut(s) 5
CviAII CATG 1 cut(s) 85
CviJI RGCY 3 cut(s) 37, 191, 264
CviKI_1 RGCY 3 cut(s) 37, 191, 264
CviQI GTAC 1 cut(s) 5
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FatI CATG 1 cut(s) 84
FauI CCCGC 1 cut(s) 178
FblI GTMKAC 2 cut(s) 81, 168
FokI GGATG 1 cut(s) 167
FspBI CTAG 1 cut(s) 265
GlaI GCGC 3 cut(s) 44, 69, 163
HapII CCGG 1 cut(s) 223
HhaI GCGC 3 cut(s) 45, 70, 164
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 3 cut(s) 43, 68, 162
HinP1I GCGC 3 cut(s) 43, 68, 162
HincII GTYRAC 3 cut(s) 82, 169, 220
HindII GTYRAC 3 cut(s) 82, 169, 220
HinfI GANTC 2 cut(s) 78, 213
HpaII CCGG 1 cut(s) 223
Hpy166II GTNNAC 3 cut(s) 82, 169, 220
Hpy188I TCNGA 2 cut(s) 138, 212
Hpy8I GTNNAC 3 cut(s) 82, 169, 220
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 107, 119
HpyCH4III ACNGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 3 cut(s) 43, 68, 162
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 4 cut(s) 60, 60, 87, 236
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 32
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 8 cut(s) 22, 83, 112, 145, 198, 235, 241, 244
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 75, 224
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 164
NciI CCSGG 1 cut(s) 224
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 213
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SalI GTCGAC 2 cut(s) 80, 167
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 2 cut(s) 75, 224
SetI ASST 7 cut(s) 33, 39, 94, 130, 209, 234, 246
SfaNI GCATC 1 cut(s) 30
Sse9I AATT 1 cut(s) 141
SsiI CCGC 3 cut(s) 149, 164, 185
SspMI CTAG 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 73, 222
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 5 cut(s) 15, 27, 81, 168, 246
TasI AATT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 33, 126
TspRI CASTG 1 cut(s) 67
XmiI GTMKAC 2 cut(s) 81, 168
XspI CTAG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.